Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2865

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,354,083	+				+0.3
3,354,188	+				-1.5
3,354,188	+				+0.4
3,354,188	+				+1.2
3,354,188	+				+0.5
3,354,188	+				-0.3
3,354,189	-				+1.1
3,354,189	-				-0.7
3,354,189	-				-0.9
3,354,189	-				-1.2
3,354,411	-		Pf6N2E2_2864	0.49	-0.5
3,354,608	-		Pf6N2E2_2864	0.86	-0.1
3,354,684	-				-0.3
3,354,721	+				-0.1
3,354,722	-				-1.6
3,354,776	+				-1.1
3,354,829	+				-0.4
3,354,829	+				+1.5
3,354,829	+				-0.4
3,354,830	-				-1.6
3,354,830	-				-1.1
3,354,830	-				-0.5
3,354,830	-				+0.2
3,354,830	-				+0.2
3,354,830	-				+0.1
3,354,830	-				-1.4
3,354,864	+				+0.1
3,354,865	-				-1.1
3,354,865	-				+0.6
3,354,867	+				-0.6
3,354,867	+				+1.2
3,354,924	+				-0.1
3,354,925	-				-0.7
3,355,072	+		Pf6N2E2_2865	0.17	+0.2
3,355,072	+		Pf6N2E2_2865	0.17	-1.0
3,355,072	+		Pf6N2E2_2865	0.17	-0.5
3,355,072	+		Pf6N2E2_2865	0.17	-1.0
3,355,072	+		Pf6N2E2_2865	0.17	-0.3
3,355,072	+		Pf6N2E2_2865	0.17	-0.5
3,355,072	+		Pf6N2E2_2865	0.17	-2.2
3,355,072	+		Pf6N2E2_2865	0.17	+0.5
3,355,072	+		Pf6N2E2_2865	0.17	-1.0
3,355,072	+		Pf6N2E2_2865	0.17	-1.7
3,355,072	+		Pf6N2E2_2865	0.17	-1.4
3,355,072	+		Pf6N2E2_2865	0.17	-2.3
3,355,073	-		Pf6N2E2_2865	0.17	-1.7
3,355,073	-		Pf6N2E2_2865	0.17	-1.0
3,355,073	-		Pf6N2E2_2865	0.17	-1.4
3,355,073	-		Pf6N2E2_2865	0.17	-0.9
3,355,073	-		Pf6N2E2_2865	0.17	-3.3
3,355,073	-		Pf6N2E2_2865	0.17	-1.4
3,355,228	+		Pf6N2E2_2865	0.32	-0.5
3,355,228	+		Pf6N2E2_2865	0.32	-0.4
3,355,228	+		Pf6N2E2_2865	0.32	-1.0
3,355,229	-		Pf6N2E2_2865	0.32	-0.9
3,355,229	-		Pf6N2E2_2865	0.32	-1.6
3,355,229	-		Pf6N2E2_2865	0.32	-1.1
3,355,229	-		Pf6N2E2_2865	0.32	-2.2
3,355,229	-		Pf6N2E2_2865	0.32	+0.2
3,355,229	-		Pf6N2E2_2865	0.32	-2.4
3,355,229	-		Pf6N2E2_2865	0.32	-0.4
3,355,235	-		Pf6N2E2_2865	0.33	+1.5
3,355,235	-		Pf6N2E2_2865	0.33	-0.4
3,355,270	+		Pf6N2E2_2865	0.36	-3.6
3,355,270	+		Pf6N2E2_2865	0.36	-1.7
3,355,270	+		Pf6N2E2_2865	0.36	-1.7
3,355,270	+		Pf6N2E2_2865	0.36	+0.5
3,355,270	+		Pf6N2E2_2865	0.36	-1.7
3,355,270	+		Pf6N2E2_2865	0.36	-0.3
3,355,270	+		Pf6N2E2_2865	0.36	-1.4
3,355,270	+		Pf6N2E2_2865	0.36	-1.4
3,355,270	+		Pf6N2E2_2865	0.36	-1.7
3,355,271	-		Pf6N2E2_2865	0.36	-1.2
3,355,271	-		Pf6N2E2_2865	0.36	+0.2
3,355,271	-		Pf6N2E2_2865	0.36	-0.1
3,355,271	-		Pf6N2E2_2865	0.36	-1.5
3,355,271	-		Pf6N2E2_2865	0.36	-0.3
3,355,271	-		Pf6N2E2_2865	0.36	-1.4
3,355,271	-		Pf6N2E2_2865	0.36	-1.8
3,355,271	-		Pf6N2E2_2865	0.36	-1.7
3,355,271	-		Pf6N2E2_2865	0.36	-1.7
3,355,279	+		Pf6N2E2_2865	0.37	-0.5
3,355,280	-		Pf6N2E2_2865	0.37	-2.3
3,355,366	+		Pf6N2E2_2865	0.45	-1.8
3,355,366	+		Pf6N2E2_2865	0.45	-0.8
3,355,366	+		Pf6N2E2_2865	0.45	-1.4
3,355,366	+		Pf6N2E2_2865	0.45	-0.0
3,355,366	+		Pf6N2E2_2865	0.45	-0.5
3,355,366	+		Pf6N2E2_2865	0.45	-2.0
3,355,366	+		Pf6N2E2_2865	0.45	-2.3
3,355,367	-		Pf6N2E2_2865	0.45	-1.5
3,355,367	-		Pf6N2E2_2865	0.45	-1.4
3,355,367	-		Pf6N2E2_2865	0.45	-2.7
3,355,367	-		Pf6N2E2_2865	0.45	-1.7
3,355,367	-		Pf6N2E2_2865	0.45	+1.5
3,355,480	+		Pf6N2E2_2865	0.56	-1.7
3,355,480	+		Pf6N2E2_2865	0.56	-1.4
3,355,480	+		Pf6N2E2_2865	0.56	+1.5
3,355,480	+		Pf6N2E2_2865	0.56	-0.6
3,355,480	+		Pf6N2E2_2865	0.56	-1.7
3,356,018	+				+0.5
3,356,018	+				+0.0
3,356,018	+				-1.1
3,356,416	+		Pf6N2E2_2866	0.59	-0.4
3,356,416	+		Pf6N2E2_2866	0.59	+0.1
3,356,416	+		Pf6N2E2_2866	0.59	-0.7
3,356,416	+		Pf6N2E2_2866	0.59	-0.2
3,356,417	-		Pf6N2E2_2866	0.59	-0.8
3,356,417	-		Pf6N2E2_2866	0.59	-0.0
3,356,417	-		Pf6N2E2_2866	0.59	-0.5
3,356,417	-		Pf6N2E2_2866	0.59	-0.8
3,356,417	-		Pf6N2E2_2866	0.59	-0.0
3,356,417	-		Pf6N2E2_2866	0.59	+0.8
3,356,417	-		Pf6N2E2_2866	0.59	+0.6
3,356,475	+		Pf6N2E2_2866	0.70	-0.1
3,356,476	-		Pf6N2E2_2866	0.70	-1.3
3,356,716	-				-0.6
3,356,835	+		Pf6N2E2_2867	0.88	-0.8
3,356,835	+		Pf6N2E2_2867	0.88	+0.2
3,356,836	-		Pf6N2E2_2867	0.88	-0.3
3,356,836	-		Pf6N2E2_2867	0.88	+0.2
3,356,836	-		Pf6N2E2_2867	0.88	-0.1
3,356,836	-		Pf6N2E2_2867	0.88	+0.6
3,356,836	-		Pf6N2E2_2867	0.88	+0.9
3,356,836	-		Pf6N2E2_2867	0.88	-0.8
3,356,836	-		Pf6N2E2_2867	0.88	+0.2
3,356,836	-		Pf6N2E2_2867	0.88	-0.1
3,356,836	-		Pf6N2E2_2867	0.88	-0.4
3,356,836	-		Pf6N2E2_2867	0.88	-0.3
3,356,836	-		Pf6N2E2_2867	0.88	+0.2
3,356,836	-		Pf6N2E2_2867	0.88	-0.7
3,356,839	+				-0.6
3,356,839	+				+1.5
3,356,839	+				+0.6
3,356,840	-				-1.5
3,356,840	-				-0.3
3,356,840	-				+0.0
3,356,840	-				+0.3
3,356,840	-				+1.3
3,356,840	-				-1.5
3,356,840	-				+1.5
3,356,840	-				+1.1
3,356,851	-				-0.1
3,356,869	+				+1.2
3,356,869	+				-0.4
3,356,870	-				-0.3
3,356,870	-				-0.3
3,356,870	-				-0.9
3,356,870	-				-0.6
3,356,870	-				+0.4
3,356,871	+				-0.2
3,356,871	+				-0.6
3,356,871	+				+0.2
3,356,871	+				+0.2
3,356,871	+				-0.4
3,356,871	+				+0.5
3,356,871	+				+0.6
3,356,871	+				+0.5
3,356,872	-				-0.1
3,356,872	-				-0.7
3,356,872	-				-0.8
3,356,872	-				-0.2
3,356,872	-				-0.8
3,356,872	-				+2.0
3,356,872	-				+0.3
3,356,872	-				+0.5
3,356,872	-				+1.5
3,356,872	-				+0.5
3,356,872	-				+0.8
3,356,872	-				-0.1
3,356,872	-				+0.3
3,356,872	-				-0.3
3,356,877	+				-0.8
3,356,877	+				-0.4
3,356,878	-				-0.7
3,356,899	+				+0.4
3,356,900	-				+0.4
3,356,900	-				-0.3
3,356,900	-				+0.5
3,356,901	+				-1.7
3,356,901	+				-0.1
3,356,902	-				-0.7
3,356,902	-				+0.5