Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2771

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,258,564	+		Pf6N2E2_2770	0.55	+0.2
3,258,564	+		Pf6N2E2_2770	0.55	-0.4
3,258,564	+		Pf6N2E2_2770	0.55	+1.0
3,258,564	+		Pf6N2E2_2770	0.55	+1.1
3,258,564	+		Pf6N2E2_2770	0.55	+0.2
3,258,565	-		Pf6N2E2_2770	0.56	-0.1
3,258,565	-		Pf6N2E2_2770	0.56	-0.2
3,258,565	-		Pf6N2E2_2770	0.56	-2.4
3,258,565	-		Pf6N2E2_2770	0.56	+1.0
3,258,565	-		Pf6N2E2_2770	0.56	+0.1
3,258,565	-		Pf6N2E2_2770	0.56	+0.8
3,258,565	-		Pf6N2E2_2770	0.56	+1.5
3,258,565	-		Pf6N2E2_2770	0.56	-0.2
3,258,565	-		Pf6N2E2_2770	0.56	+0.0
3,258,565	-		Pf6N2E2_2770	0.56	-0.5
3,258,566	+		Pf6N2E2_2770	0.56	-0.5
3,258,567	-		Pf6N2E2_2770	0.56	-0.8
3,258,567	-		Pf6N2E2_2770	0.56	+0.6
3,258,567	-		Pf6N2E2_2770	0.56	-0.1
3,258,745	-		Pf6N2E2_2770	0.67	-0.1
3,258,939	+		Pf6N2E2_2770	0.80	-0.4
3,258,939	+		Pf6N2E2_2770	0.80	-0.6
3,258,939	+		Pf6N2E2_2770	0.80	+0.0
3,259,000	-		Pf6N2E2_2770	0.84	+0.2
3,259,368	+		Pf6N2E2_2771	0.13	-0.4
3,259,368	+		Pf6N2E2_2771	0.13	-1.2
3,259,369	-		Pf6N2E2_2771	0.13	-1.6
3,259,369	-		Pf6N2E2_2771	0.13	-1.3
3,259,404	+		Pf6N2E2_2771	0.17	-0.8
3,259,404	+		Pf6N2E2_2771	0.17	-0.5
3,259,404	+		Pf6N2E2_2771	0.17	-1.1
3,259,405	-		Pf6N2E2_2771	0.17	-1.0
3,259,405	-		Pf6N2E2_2771	0.17	-0.5
3,259,405	-		Pf6N2E2_2771	0.17	-0.1
3,259,647	+		Pf6N2E2_2771	0.40	-0.1
3,259,648	-		Pf6N2E2_2771	0.40	-0.5
3,259,648	-		Pf6N2E2_2771	0.40	-1.6
3,259,688	+		Pf6N2E2_2771	0.44	-0.4
3,259,689	-		Pf6N2E2_2771	0.44	+1.5
3,259,689	-		Pf6N2E2_2771	0.44	-0.2
3,259,717	+		Pf6N2E2_2771	0.47	+0.0
3,259,718	-		Pf6N2E2_2771	0.47	+0.9
3,259,718	-		Pf6N2E2_2771	0.47	+1.5
3,259,866	-		Pf6N2E2_2771	0.61	-1.6
3,259,866	-		Pf6N2E2_2771	0.61	+0.1
3,259,866	-		Pf6N2E2_2771	0.61	+0.0
3,259,866	-		Pf6N2E2_2771	0.61	+0.7
3,260,060	+		Pf6N2E2_2771	0.80	-3.1
3,260,090	+		Pf6N2E2_2771	0.83	-0.1
3,260,090	+		Pf6N2E2_2771	0.83	-0.5
3,260,091	-		Pf6N2E2_2771	0.83	-1.1
3,260,091	-		Pf6N2E2_2771	0.83	-0.7
3,260,091	-		Pf6N2E2_2771	0.83	-0.8
3,260,091	-		Pf6N2E2_2771	0.83	+0.3
3,260,091	-		Pf6N2E2_2771	0.83	+0.5
3,260,091	-		Pf6N2E2_2771	0.83	+0.1
3,260,109	+		Pf6N2E2_2771	0.84	+0.2
3,260,110	-		Pf6N2E2_2771	0.84	-0.0
3,260,267	+				-0.1
3,260,267	+				+1.5
3,260,267	+				+0.0
3,260,267	+				-1.4
3,260,268	-				+0.3
3,260,268	-				-3.2
3,260,269	+				-0.6
3,260,269	+				-0.1
3,260,270	-				+0.1
3,260,517	+				-0.8
3,260,517	+				+0.3
3,260,517	+				-2.0
3,260,517	+				+0.7
3,260,518	-				+1.5
3,260,705	+		Pf6N2E2_2772	0.27	-0.9
3,260,821	+		Pf6N2E2_2772	0.44	-0.1
3,260,821	+		Pf6N2E2_2772	0.44	+0.7
3,260,821	+		Pf6N2E2_2772	0.44	+0.2
3,260,822	-		Pf6N2E2_2772	0.44	+0.8
3,260,822	-		Pf6N2E2_2772	0.44	-1.1
3,260,913	+		Pf6N2E2_2772	0.57	+0.9
3,260,913	+		Pf6N2E2_2772	0.57	+1.5
3,260,913	+		Pf6N2E2_2772	0.57	-1.1
3,260,913	+		Pf6N2E2_2772	0.57	+0.5
3,260,914	-		Pf6N2E2_2772	0.57	-0.6
3,260,914	-		Pf6N2E2_2772	0.57	+0.1
3,260,914	-		Pf6N2E2_2772	0.57	-0.0
3,260,914	-		Pf6N2E2_2772	0.57	+2.1
3,260,917	+		Pf6N2E2_2772	0.58	-1.7
3,261,100	-		Pf6N2E2_2772	0.84	+1.1
3,261,100	-		Pf6N2E2_2772	0.84	+0.3
3,261,111	-		Pf6N2E2_2772	0.86	+0.5
3,261,135	+		Pf6N2E2_2772	0.89	-0.5
3,261,135	+		Pf6N2E2_2772	0.89	+0.8
3,261,135	+		Pf6N2E2_2772	0.89	-0.3
3,261,135	+		Pf6N2E2_2772	0.89	-0.1
3,261,135	+		Pf6N2E2_2772	0.89	-1.0
3,261,136	-		Pf6N2E2_2772	0.89	-0.8
3,261,136	-		Pf6N2E2_2772	0.89	-0.3
3,261,136	-		Pf6N2E2_2772	0.89	+0.2
3,261,136	-		Pf6N2E2_2772	0.89	+0.1
3,261,191	-				+0.2
3,261,251	+				+0.3
3,261,251	+				+0.0
3,261,251	+				-0.2
3,261,252	-				+0.8
3,261,252	-				-0.4
3,261,252	-				+1.0
3,261,252	-				-1.1
3,261,252	-				-0.6