Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2758

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,248,497	-		Pf6N2E2_2756	0.45	+0.5
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,497	-		Pf6N2E2_2756	0.45	-0.5
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,497	-		Pf6N2E2_2756	0.45	+0.5
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,497	-		Pf6N2E2_2756	0.45	+0.9
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,497	-		Pf6N2E2_2756	0.45	+1.5
3,248,520	-		Pf6N2E2_2756	0.49	-0.4
3,248,520	-		Pf6N2E2_2756	0.49	+1.5
3,248,520	-		Pf6N2E2_2756	0.49	-0.1
3,248,520	-		Pf6N2E2_2756	0.49	-0.1
3,248,602	-		Pf6N2E2_2756	0.63	+1.5
3,248,731	-		Pf6N2E2_2756	0.85	+1.0
3,248,731	-		Pf6N2E2_2756	0.85	+0.5
3,248,731	-		Pf6N2E2_2756	0.85	+1.5
3,248,734	+		Pf6N2E2_2756	0.86	+1.5
3,248,735	-		Pf6N2E2_2756	0.86	+1.5
3,248,852	-				+0.9
3,248,854	+				+2.5
3,248,855	-				+1.5
3,248,855	-				-0.1
3,248,876	+				+1.5
3,248,877	-				-0.3
3,248,985	-				+0.8
3,249,069	-				+0.9
3,249,069	-				+0.7
3,249,078	-				-0.1
3,249,078	-				+0.6
3,249,105	+				-0.0
3,249,105	+				+1.5
3,249,105	+				+1.5
3,249,105	+				+1.5
3,249,106	-				+0.5
3,249,106	-				+0.3
3,249,106	-				+0.3
3,249,107	+				+1.5
3,249,115	+				+1.5
3,249,116	-				+0.6
3,249,116	-				+1.1
3,249,116	-				+0.3
3,249,124	+				+1.5
3,249,125	-				-1.3
3,249,125	-				+0.5
3,249,145	+				+1.5
3,249,145	+				-0.7
3,249,146	-				-1.4
3,249,146	-				+0.9
3,249,146	-				+0.5
3,249,146	-				+0.3
3,249,146	-				+0.9
3,249,146	-				+0.2
3,249,262	+				+1.5
3,249,283	+				-1.5
3,249,283	+				+0.3
3,249,283	+				-0.3
3,249,283	+				+0.3
3,249,284	-				+1.5
3,249,284	-				+0.6
3,249,284	-				+0.5
3,249,285	+				+1.5
3,249,285	+				+1.5
3,249,285	+				+1.5
3,249,285	+				+0.0
3,249,285	+				-0.1
3,249,285	+				-0.4
3,249,285	+				+1.5
3,249,285	+				-0.1
3,249,285	+				+0.5
3,249,285	+				+1.5
3,249,285	+				+1.5
3,249,285	+				-1.3
3,249,285	+				+1.5
3,249,286	-				+0.2
3,249,286	-				-1.7
3,249,286	-				+0.6
3,249,286	-				+0.0
3,249,286	-				+1.0
3,249,286	-				+1.1
3,249,286	-				+0.5
3,249,286	-				+0.9
3,249,287	+				+1.5
3,249,287	+				-1.3
3,249,287	+				+0.9
3,249,287	+				+1.5
3,249,287	+				+1.5
3,249,287	+				+0.3
3,249,287	+				+0.5
3,249,287	+				+2.5
3,249,288	-				+0.7
3,249,288	-				+1.5
3,249,288	-				-1.3
3,249,288	-				+0.6
3,249,288	-				-1.0
3,249,288	-				+0.8
3,249,288	-				+0.6
3,249,288	-				+1.7
3,249,288	-				-0.2
3,249,290	+				+0.9
3,249,290	+				+1.5
3,249,290	+				-0.1
3,249,290	+				+1.9
3,249,290	+				+0.1
3,249,291	-				-0.3
3,249,407	-		Pf6N2E2_2757	0.71	-2.8
3,249,673	+		Pf6N2E2_2758	0.16	+1.5
3,249,921	+		Pf6N2E2_2758	0.31	+1.5
3,249,922	-		Pf6N2E2_2758	0.32	-2.7
3,249,922	-		Pf6N2E2_2758	0.32	-1.6
3,249,922	-		Pf6N2E2_2758	0.32	-2.3
3,249,922	-		Pf6N2E2_2758	0.32	+0.2
3,249,922	-		Pf6N2E2_2758	0.32	-2.0
3,249,954	-		Pf6N2E2_2758	0.34	-2.3
3,249,957	+		Pf6N2E2_2758	0.34	-2.1
3,249,957	+		Pf6N2E2_2758	0.34	-1.6
3,249,957	+		Pf6N2E2_2758	0.34	-2.0
3,249,957	+		Pf6N2E2_2758	0.34	-1.6
3,249,957	+		Pf6N2E2_2758	0.34	-1.6
3,249,957	+		Pf6N2E2_2758	0.34	-1.7
3,249,958	-		Pf6N2E2_2758	0.34	-1.2
3,249,958	-		Pf6N2E2_2758	0.34	-1.4
3,249,958	-		Pf6N2E2_2758	0.34	-1.1
3,250,005	+		Pf6N2E2_2758	0.37	-0.4
3,250,006	-		Pf6N2E2_2758	0.37	-3.2
3,250,006	-		Pf6N2E2_2758	0.37	-0.6
3,250,006	-		Pf6N2E2_2758	0.37	-0.3
3,250,011	+		Pf6N2E2_2758	0.37	-3.3
3,250,012	-		Pf6N2E2_2758	0.37	-1.3
3,250,012	-		Pf6N2E2_2758	0.37	-1.5
3,250,014	-		Pf6N2E2_2758	0.37	-1.9
3,250,014	-		Pf6N2E2_2758	0.37	-1.5
3,250,014	-		Pf6N2E2_2758	0.37	-2.1
3,250,120	-		Pf6N2E2_2758	0.44	-2.2
3,250,120	-		Pf6N2E2_2758	0.44	+1.5
3,250,360	-		Pf6N2E2_2758	0.60	-1.4
3,250,360	-		Pf6N2E2_2758	0.60	-1.4
3,250,428	+		Pf6N2E2_2758	0.64	-2.0
3,250,428	+		Pf6N2E2_2758	0.64	-3.1
3,250,428	+		Pf6N2E2_2758	0.64	+1.5
3,250,428	+		Pf6N2E2_2758	0.64	-2.1
3,250,428	+		Pf6N2E2_2758	0.64	-2.4
3,250,429	-		Pf6N2E2_2758	0.64	-0.3
3,250,429	-		Pf6N2E2_2758	0.64	-1.9
3,250,429	-		Pf6N2E2_2758	0.64	-0.3
3,250,429	-		Pf6N2E2_2758	0.64	+1.5
3,250,429	-		Pf6N2E2_2758	0.64	-1.6
3,250,485	+		Pf6N2E2_2758	0.68	-0.5
3,250,485	+		Pf6N2E2_2758	0.68	-0.5
3,250,485	+		Pf6N2E2_2758	0.68	-1.8
3,250,486	-		Pf6N2E2_2758	0.68	-2.3
3,250,486	-		Pf6N2E2_2758	0.68	-1.6
3,250,486	-		Pf6N2E2_2758	0.68	-0.4
3,250,486	-		Pf6N2E2_2758	0.68	-1.1
3,250,566	+		Pf6N2E2_2758	0.73	-2.8
3,250,702	+		Pf6N2E2_2758	0.81	-0.2
3,250,703	-		Pf6N2E2_2758	0.82	-1.5
3,250,722	+		Pf6N2E2_2758	0.83	-0.9
3,250,722	+		Pf6N2E2_2758	0.83	-0.8
3,250,722	+		Pf6N2E2_2758	0.83	-0.6
3,250,722	+		Pf6N2E2_2758	0.83	+0.2
3,250,723	-		Pf6N2E2_2758	0.83	-2.7
3,250,723	-				+0.5
3,250,806	+		Pf6N2E2_2758	0.88	-1.7
3,250,806	+		Pf6N2E2_2758	0.88	-1.8
3,250,815	+		Pf6N2E2_2758	0.89	-1.5
3,250,815	+		Pf6N2E2_2758	0.89	-1.0
3,250,815	+		Pf6N2E2_2758	0.89	-1.9
3,250,815	+		Pf6N2E2_2758	0.89	-2.4
3,250,815	+		Pf6N2E2_2758	0.89	+1.5
3,250,815	+		Pf6N2E2_2758	0.89	-3.1
3,250,815	+		Pf6N2E2_2758	0.89	-1.6
3,250,815	+		Pf6N2E2_2758	0.89	-0.4
3,250,816	-		Pf6N2E2_2758	0.89	-3.0
3,250,816	-		Pf6N2E2_2758	0.89	-1.1
3,250,816	-		Pf6N2E2_2758	0.89	-3.5
3,250,816	-		Pf6N2E2_2758	0.89	-2.2
3,250,816	-		Pf6N2E2_2758	0.89	-1.8
3,250,817	+		Pf6N2E2_2758	0.89	-0.1
3,250,817	+		Pf6N2E2_2758	0.89	-0.8
3,250,817	+		Pf6N2E2_2758	0.89	-3.2
3,250,817	+		Pf6N2E2_2758	0.89	-1.5
3,250,817	+		Pf6N2E2_2758	0.89	-3.0
3,250,818	-		Pf6N2E2_2758	0.89	-1.3
3,250,818	-		Pf6N2E2_2758	0.89	-2.2
3,250,818	-		Pf6N2E2_2758	0.89	-2.4
3,250,917	+				-0.3
3,250,917	+				-3.5
3,250,917	+				-2.0
3,250,917	+				-1.0
3,250,918	-				-0.7
3,250,918	-				-1.3
3,250,961	+				-1.7
3,250,962	-				-2.2
3,250,980	+				+0.1
3,250,980	+				-0.4
3,250,981	-				+1.0
3,251,187	+		Pf6N2E2_2759	0.50	-0.5
3,251,232	-		Pf6N2E2_2759	0.60	+0.9
3,251,269	+		Pf6N2E2_2759	0.68	+0.5
3,251,269	+		Pf6N2E2_2759	0.68	+2.2
3,251,269	+		Pf6N2E2_2759	0.68	-1.3
3,251,269	+		Pf6N2E2_2759	0.68	-0.3
3,251,269	+		Pf6N2E2_2759	0.68	-1.2
3,251,269	+		Pf6N2E2_2759	0.68	-0.1
3,251,269	+		Pf6N2E2_2759	0.68	-0.0
3,251,270	-		Pf6N2E2_2759	0.68	-0.3
3,251,270	-		Pf6N2E2_2759	0.68	+0.0
3,251,270	-		Pf6N2E2_2759	0.68	-2.6
3,251,270	-		Pf6N2E2_2759	0.68	+0.1
3,251,270	-		Pf6N2E2_2759	0.68	-0.2
3,251,270	-		Pf6N2E2_2759	0.68	+0.8
3,251,270	-		Pf6N2E2_2759	0.68	-1.2
3,251,270	-		Pf6N2E2_2759	0.68	+0.3
3,251,270	-		Pf6N2E2_2759	0.68	-1.2
3,251,270	-		Pf6N2E2_2759	0.68	+0.2
3,251,270	-		Pf6N2E2_2759	0.68	-0.1
3,251,348	+		Pf6N2E2_2759	0.86	+0.1
3,251,348	+		Pf6N2E2_2759	0.86	+0.5
3,251,349	-		Pf6N2E2_2759	0.86	-0.4
3,251,397	+				+0.3
3,251,397	+				-0.3
3,251,397	+				-1.3
3,251,398	-				+0.1
3,251,398	-				-0.2
3,251,398	-				-0.7
3,251,398	-				-0.2
3,251,398	-				+0.6
3,251,667	-		Pf6N2E2_2761	0.18	-0.8
3,251,667	-		Pf6N2E2_2761	0.18	-0.8
3,251,678	-		Pf6N2E2_2761	0.24	-0.7
3,251,678	-		Pf6N2E2_2761	0.24	-0.2
3,251,680	-		Pf6N2E2_2761	0.25	-0.7
3,251,680	-		Pf6N2E2_2761	0.25	-1.4
3,251,680	-		Pf6N2E2_2761	0.25	-0.2
3,251,740	+		Pf6N2E2_2761	0.54	-0.1
3,251,763	+		Pf6N2E2_2761	0.65	+0.5
3,251,763	+		Pf6N2E2_2761	0.65	-1.3
3,251,764	-		Pf6N2E2_2761	0.65	+1.5
3,251,772	+		Pf6N2E2_2761	0.69	+0.7
3,251,772	+		Pf6N2E2_2761	0.69	-0.3
3,251,784	+		Pf6N2E2_2761	0.75	-0.8