Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2752

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
3,242,632	+		Pf6N2E2_2750	0.54	+0.4
3,242,633	-		Pf6N2E2_2750	0.54	-0.5
3,242,633	-		Pf6N2E2_2750	0.54	+1.5
3,242,633	-		Pf6N2E2_2750	0.54	-2.7
3,242,872	-		Pf6N2E2_2750	0.76	-1.0
3,242,977	+		Pf6N2E2_2750	0.86	+0.5
3,243,092	-				+0.2
3,243,092	-				+1.4
3,243,380	+				-2.8
3,243,380	+				-1.8
3,243,427	+				+0.3
3,243,428	-				+0.1
3,243,432	+				-1.0
3,243,432	+				-0.8
3,243,432	+				+0.2
3,243,432	+				+1.5
3,243,433	-				-0.4
3,243,433	-				-0.3
3,243,433	-				+0.4
3,243,459	+				-1.0
3,243,464	+				+1.1
3,243,464	+				+0.4
3,243,464	+				-0.2
3,243,464	+				+0.5
3,243,465	-				+1.5
3,243,481	-				+1.5
3,243,688	+		Pf6N2E2_2752	0.14	+1.5
3,243,688	+		Pf6N2E2_2752	0.14	+1.5
3,243,689	-		Pf6N2E2_2752	0.14	+1.5
3,243,706	+		Pf6N2E2_2752	0.15	-1.2
3,243,706	+		Pf6N2E2_2752	0.15	-1.8
3,243,707	-		Pf6N2E2_2752	0.15	-3.3
3,243,853	+		Pf6N2E2_2752	0.25	+0.5
3,243,854	-		Pf6N2E2_2752	0.25	-1.8
3,244,117	+		Pf6N2E2_2752	0.44	+1.5
3,244,321	+		Pf6N2E2_2752	0.58	-2.5
3,244,321	+		Pf6N2E2_2752	0.58	-0.1
3,244,321	+		Pf6N2E2_2752	0.58	-2.8
3,244,322	-		Pf6N2E2_2752	0.58	-2.3
3,244,322	-		Pf6N2E2_2752	0.58	+1.5
3,244,399	+		Pf6N2E2_2752	0.63	-1.3
3,244,495	+		Pf6N2E2_2752	0.70	+1.5
3,244,495	+		Pf6N2E2_2752	0.70	-2.8
3,244,495	+		Pf6N2E2_2752	0.70	+1.5
3,244,495	+		Pf6N2E2_2752	0.70	+1.5
3,244,495	+		Pf6N2E2_2752	0.70	+1.5
3,244,495	+		Pf6N2E2_2752	0.70	-2.4
3,244,495	+		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	-0.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	+1.5
3,244,496	-		Pf6N2E2_2752	0.70	-3.3
3,244,579	+		Pf6N2E2_2752	0.76	+0.5
3,244,592	-		Pf6N2E2_2752	0.77	+1.5
3,244,705	+		Pf6N2E2_2752	0.85	+1.5
3,244,705	+		Pf6N2E2_2752	0.85	+1.5
3,244,705	+		Pf6N2E2_2752	0.85	+1.5
3,244,771	+		Pf6N2E2_2752	0.89	-1.3
3,244,943	-				-0.5
3,244,943	-				+0.5
3,245,130	+				-0.7
3,245,131	-				+0.2
3,245,131	-				+1.5
3,245,410	+		Pf6N2E2_2753	0.29	-0.5
3,245,410	+		Pf6N2E2_2753	0.29	-0.1
3,245,410	+		Pf6N2E2_2753	0.29	+1.2
3,245,709	-		Pf6N2E2_2753	0.50	-0.6
3,245,811	-		Pf6N2E2_2753	0.57	-1.3