Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2380

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,816,713	-		Pf6N2E2_2378	0.73	+0.9
2,816,713	-		Pf6N2E2_2378	0.73	-0.1
2,816,713	-		Pf6N2E2_2378	0.73	+0.5
2,816,713	-		Pf6N2E2_2378	0.73	-0.2
2,816,719	+		Pf6N2E2_2378	0.73	+0.9
2,816,719	+		Pf6N2E2_2378	0.73	-0.3
2,816,720	-		Pf6N2E2_2378	0.73	-0.4
2,817,048	+		Pf6N2E2_2378	0.86	-0.2
2,817,048	+		Pf6N2E2_2378	0.86	-0.5
2,817,048	+		Pf6N2E2_2378	0.86	-0.9
2,817,048	+		Pf6N2E2_2378	0.86	+0.1
2,817,048	+		Pf6N2E2_2378	0.86	-0.7
2,817,048	+		Pf6N2E2_2378	0.86	-0.7
2,817,048	+		Pf6N2E2_2378	0.86	+0.4
2,817,048	+		Pf6N2E2_2378	0.86	-0.5
2,817,049	-		Pf6N2E2_2378	0.86	-0.4
2,817,049	-		Pf6N2E2_2378	0.86	-0.7
2,817,049	-		Pf6N2E2_2378	0.86	-0.1
2,817,049	-		Pf6N2E2_2378	0.86	+0.1
2,817,049	-		Pf6N2E2_2378	0.86	-0.0
2,817,049	-		Pf6N2E2_2378	0.86	+0.9
2,817,049	-		Pf6N2E2_2378	0.86	-0.1
2,817,130	-		Pf6N2E2_2378	0.90	+0.3
2,817,171	+				-1.1
2,817,171	+				-0.4
2,817,172	-				+2.1
2,817,172	-				-0.1
2,817,192	+				-0.5
2,817,192	+				+0.5
2,817,192	+				+1.5
2,817,192	+				+0.4
2,817,192	+				+0.1
2,817,192	+				+0.8
2,817,192	+				+0.3
2,817,193	-				-0.4
2,817,193	-				-1.1
2,817,193	-				-0.3
2,817,193	-				-0.1
2,817,398	-				+0.1
2,817,672	+				+0.2
2,818,012	+		Pf6N2E2_2380	0.11	-0.1
2,818,012	+		Pf6N2E2_2380	0.11	+0.4
2,818,012	+		Pf6N2E2_2380	0.11	+1.3
2,818,013	-		Pf6N2E2_2380	0.12	+0.5
2,818,013	-		Pf6N2E2_2380	0.12	-0.4
2,818,013	-		Pf6N2E2_2380	0.12	-0.5
2,818,042	+		Pf6N2E2_2380	0.13	-0.1
2,818,042	+		Pf6N2E2_2380	0.13	+0.7
2,818,042	+		Pf6N2E2_2380	0.13	-0.4
2,818,043	-		Pf6N2E2_2380	0.13	-0.2
2,818,043	-		Pf6N2E2_2380	0.13	-0.7
2,818,043	-		Pf6N2E2_2380	0.13	+0.5
2,818,043	-		Pf6N2E2_2380	0.13	-1.3
2,818,043	-		Pf6N2E2_2380	0.13	-1.4
2,818,043	-		Pf6N2E2_2380	0.13	+0.6
2,818,043	-		Pf6N2E2_2380	0.13	-2.0
2,818,043	-		Pf6N2E2_2380	0.13	+0.8
2,818,043	-		Pf6N2E2_2380	0.13	+0.2
2,818,043	-		Pf6N2E2_2380	0.13	-1.1
2,818,043	-		Pf6N2E2_2380	0.13	-0.1
2,818,045	+		Pf6N2E2_2380	0.13	-0.7
2,818,045	+		Pf6N2E2_2380	0.13	+0.2
2,818,045	+		Pf6N2E2_2380	0.13	+0.6
2,818,046	-		Pf6N2E2_2380	0.13	-1.8
2,818,046	-		Pf6N2E2_2380	0.13	+0.1
2,818,046	-		Pf6N2E2_2380	0.13	+0.5
2,818,046	-		Pf6N2E2_2380	0.13	-1.1
2,818,046	-		Pf6N2E2_2380	0.13	+1.5
2,818,046	-		Pf6N2E2_2380	0.13	-0.2
2,818,046	-		Pf6N2E2_2380	0.13	-0.9
2,818,086	+		Pf6N2E2_2380	0.14	+0.9
2,818,136	-		Pf6N2E2_2380	0.16	+1.5
2,818,136	-		Pf6N2E2_2380	0.16	+0.2
2,818,483	+		Pf6N2E2_2380	0.29	-0.1
2,818,643	+		Pf6N2E2_2380	0.35	-1.1
2,818,643	+		Pf6N2E2_2380	0.35	-0.2
2,818,643	+		Pf6N2E2_2380	0.35	-0.7
2,818,643	+		Pf6N2E2_2380	0.35	+0.7
2,818,643	+		Pf6N2E2_2380	0.35	-0.1
2,818,643	+		Pf6N2E2_2380	0.35	-0.4
2,818,643	+		Pf6N2E2_2380	0.35	+0.1
2,818,643	+		Pf6N2E2_2380	0.35	-0.2
2,818,644	-		Pf6N2E2_2380	0.35	-0.1
2,818,644	-		Pf6N2E2_2380	0.35	+1.5
2,818,644	-		Pf6N2E2_2380	0.35	-0.5
2,818,644	-		Pf6N2E2_2380	0.35	+2.5
2,818,644	-		Pf6N2E2_2380	0.35	-0.8
2,819,239	+		Pf6N2E2_2380	0.57	-0.4
2,819,239	+		Pf6N2E2_2380	0.57	+1.7
2,819,239	+		Pf6N2E2_2380	0.57	-1.5
2,819,239	+		Pf6N2E2_2380	0.57	-0.9
2,819,362	+		Pf6N2E2_2380	0.61	-0.9
2,819,362	+		Pf6N2E2_2380	0.61	-2.1
2,819,362	+		Pf6N2E2_2380	0.61	-0.2
2,819,363	-		Pf6N2E2_2380	0.61	-1.5
2,819,363	-		Pf6N2E2_2380	0.61	-0.1
2,819,363	-		Pf6N2E2_2380	0.61	-0.1
2,819,730	+		Pf6N2E2_2380	0.75	+1.2
2,819,896	+		Pf6N2E2_2380	0.81	-0.4
2,819,896	+		Pf6N2E2_2380	0.81	-0.8
2,820,031	+		Pf6N2E2_2380	0.86	+0.5
2,820,072	-		Pf6N2E2_2380	0.87	+0.1
2,820,288	+				-2.1
2,820,288	+				+1.5
2,820,427	+				-1.7
2,820,428	-				-1.8
2,820,478	-				+2.5
2,820,478	-				+1.5
2,820,926	+		Pf6N2E2_2381	0.66	-1.3
2,820,926	+		Pf6N2E2_2381	0.66	+1.5
2,820,926	+		Pf6N2E2_2381	0.66	+0.5
2,820,926	+		Pf6N2E2_2381	0.66	-1.8
2,820,926	+		Pf6N2E2_2381	0.66	-0.3
2,820,926	+		Pf6N2E2_2381	0.66	+0.1
2,820,926	+		Pf6N2E2_2381	0.66	-0.3
2,820,927	-		Pf6N2E2_2381	0.66	+0.5
2,820,927	-		Pf6N2E2_2381	0.66	-0.5
2,820,927	-		Pf6N2E2_2381	0.66	+1.5
2,820,927	-		Pf6N2E2_2381	0.66	+0.9
2,820,927	-		Pf6N2E2_2381	0.66	+1.5
2,820,927	-		Pf6N2E2_2381	0.66	-1.7
2,820,927	-		Pf6N2E2_2381	0.66	+1.5
2,821,179	+				-1.4
2,821,179	+				-0.8
2,821,179	+				-0.6
2,821,180	-				+1.5
2,821,291	+				-0.2
2,821,291	+				+0.5