Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2378

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,813,938	+		Pf6N2E2_2377	0.68	+0.7
2,813,938	+		Pf6N2E2_2377	0.68	+1.5
2,813,939	-		Pf6N2E2_2377	0.68	+0.5
2,814,016	+		Pf6N2E2_2377	0.72	-0.2
2,814,070	+		Pf6N2E2_2377	0.76	+0.2
2,814,070	+		Pf6N2E2_2377	0.76	+0.3
2,814,070	+		Pf6N2E2_2377	0.76	-0.0
2,814,070	+		Pf6N2E2_2377	0.76	+0.3
2,814,071	-		Pf6N2E2_2377	0.76	+0.4
2,814,071	-		Pf6N2E2_2377	0.76	+1.5
2,814,071	-		Pf6N2E2_2377	0.76	+0.4
2,814,071	-		Pf6N2E2_2377	0.76	-0.6
2,814,071	-		Pf6N2E2_2377	0.76	-0.8
2,814,071	-		Pf6N2E2_2377	0.76	-1.0
2,814,071	-		Pf6N2E2_2377	0.76	+1.1
2,814,071	-		Pf6N2E2_2377	0.76	-2.2
2,814,124	+		Pf6N2E2_2377	0.79	+2.5
2,814,125	-		Pf6N2E2_2377	0.79	+0.6
2,814,145	+		Pf6N2E2_2377	0.80	-0.4
2,814,145	+		Pf6N2E2_2377	0.80	+0.1
2,814,145	+		Pf6N2E2_2377	0.80	-0.5
2,814,146	-		Pf6N2E2_2377	0.80	-0.5
2,814,146	-		Pf6N2E2_2377	0.80	-0.4
2,814,146	-		Pf6N2E2_2377	0.80	+0.5
2,814,365	+				+0.3
2,814,365	+				-0.6
2,814,480	-				-0.1
2,814,497	+				-0.6
2,814,620	+				+0.1
2,814,668	+				+0.3
2,814,669	-				+0.1
2,814,669	-				-0.1
2,814,762	+				-1.8
2,814,762	+				+0.5
2,814,763	-				-1.7
2,814,763	-				-0.3
2,814,763	-				+1.5
2,814,763	-				+1.3
2,814,766	+				+0.6
2,814,766	+				-0.3
2,814,766	+				+0.1
2,814,766	+				-0.5
2,814,766	+				-0.3
2,814,767	-				+0.0
2,814,767	-				+0.4
2,814,767	-				-0.4
2,814,767	-				-0.1
2,814,767	-				-0.2
2,814,767	-				-2.9
2,815,020	+				-0.6
2,815,021	-				-0.8
2,815,059	+				+0.0
2,815,059	+				-1.3
2,815,059	+				+1.1
2,815,060	-				+0.7
2,815,060	-				-0.9
2,815,060	-				+1.2
2,815,137	+				-0.0
2,815,137	+				-0.5
2,815,236	+		Pf6N2E2_2378	0.12	-1.6
2,815,236	+		Pf6N2E2_2378	0.12	+0.2
2,815,741	-		Pf6N2E2_2378	0.33	+1.5
2,815,741	-		Pf6N2E2_2378	0.33	-2.1
2,815,755	+		Pf6N2E2_2378	0.33	-0.1
2,815,755	+		Pf6N2E2_2378	0.33	-0.1
2,815,755	+		Pf6N2E2_2378	0.33	+1.5
2,815,755	+		Pf6N2E2_2378	0.33	-0.1
2,815,756	-		Pf6N2E2_2378	0.34	+0.7
2,815,756	-		Pf6N2E2_2378	0.34	-0.9
2,815,869	+		Pf6N2E2_2378	0.38	+1.5
2,815,869	+		Pf6N2E2_2378	0.38	+1.1
2,815,869	+		Pf6N2E2_2378	0.38	-1.3
2,815,870	-		Pf6N2E2_2378	0.38	+1.2
2,815,870	-		Pf6N2E2_2378	0.38	+0.7
2,815,870	-		Pf6N2E2_2378	0.38	+1.5
2,815,870	-		Pf6N2E2_2378	0.38	+1.2
2,815,992	+		Pf6N2E2_2378	0.43	+1.2
2,816,067	+		Pf6N2E2_2378	0.46	+0.5
2,816,067	+		Pf6N2E2_2378	0.46	-0.5
2,816,067	+		Pf6N2E2_2378	0.46	-1.1
2,816,329	+		Pf6N2E2_2378	0.57	+0.1
2,816,330	-		Pf6N2E2_2378	0.57	-0.0
2,816,481	+		Pf6N2E2_2378	0.63	+1.5
2,816,535	+		Pf6N2E2_2378	0.65	-0.1
2,816,535	+		Pf6N2E2_2378	0.65	+0.5
2,816,535	+		Pf6N2E2_2378	0.65	-0.6
2,816,536	-		Pf6N2E2_2378	0.65	+0.3
2,816,536	-		Pf6N2E2_2378	0.65	+1.0
2,816,536	-		Pf6N2E2_2378	0.65	+0.0
2,816,536	-		Pf6N2E2_2378	0.65	+0.5
2,816,536	-		Pf6N2E2_2378	0.65	-0.5
2,816,538	+		Pf6N2E2_2378	0.65	+0.8
2,816,539	-		Pf6N2E2_2378	0.65	-0.2
2,816,539	-		Pf6N2E2_2378	0.65	+0.1
2,816,635	-		Pf6N2E2_2378	0.69	-0.2
2,816,713	-		Pf6N2E2_2378	0.73	+0.9
2,816,713	-		Pf6N2E2_2378	0.73	-0.1
2,816,713	-		Pf6N2E2_2378	0.73	+0.5
2,816,713	-		Pf6N2E2_2378	0.73	-0.2
2,816,719	+		Pf6N2E2_2378	0.73	+0.9
2,816,719	+		Pf6N2E2_2378	0.73	-0.3
2,816,720	-		Pf6N2E2_2378	0.73	-0.4
2,817,048	+		Pf6N2E2_2378	0.86	-0.2
2,817,048	+		Pf6N2E2_2378	0.86	-0.5
2,817,048	+		Pf6N2E2_2378	0.86	-0.9
2,817,048	+		Pf6N2E2_2378	0.86	+0.1
2,817,048	+		Pf6N2E2_2378	0.86	-0.7
2,817,048	+		Pf6N2E2_2378	0.86	-0.7
2,817,048	+		Pf6N2E2_2378	0.86	+0.4
2,817,048	+		Pf6N2E2_2378	0.86	-0.5
2,817,049	-		Pf6N2E2_2378	0.86	-0.4
2,817,049	-		Pf6N2E2_2378	0.86	-0.7
2,817,049	-		Pf6N2E2_2378	0.86	-0.1
2,817,049	-		Pf6N2E2_2378	0.86	+0.1
2,817,049	-		Pf6N2E2_2378	0.86	-0.0
2,817,049	-		Pf6N2E2_2378	0.86	+0.9
2,817,049	-		Pf6N2E2_2378	0.86	-0.1
2,817,130	-		Pf6N2E2_2378	0.90	+0.3
2,817,171	+				-1.1
2,817,171	+				-0.4
2,817,172	-				+2.1
2,817,172	-				-0.1
2,817,192	+				-0.5
2,817,192	+				+0.5
2,817,192	+				+1.5
2,817,192	+				+0.4
2,817,192	+				+0.1
2,817,192	+				+0.8
2,817,192	+				+0.3
2,817,193	-				-0.4
2,817,193	-				-1.1
2,817,193	-				-0.3
2,817,193	-				-0.1
2,817,398	-				+0.1
2,817,672	+				+0.2
2,818,012	+		Pf6N2E2_2380	0.11	-0.1
2,818,012	+		Pf6N2E2_2380	0.11	+0.4
2,818,012	+		Pf6N2E2_2380	0.11	+1.3
2,818,013	-		Pf6N2E2_2380	0.12	+0.5
2,818,013	-		Pf6N2E2_2380	0.12	-0.4
2,818,013	-		Pf6N2E2_2380	0.12	-0.5
2,818,042	+		Pf6N2E2_2380	0.13	-0.1
2,818,042	+		Pf6N2E2_2380	0.13	+0.7
2,818,042	+		Pf6N2E2_2380	0.13	-0.4
2,818,043	-		Pf6N2E2_2380	0.13	-0.2
2,818,043	-		Pf6N2E2_2380	0.13	-0.7
2,818,043	-		Pf6N2E2_2380	0.13	+0.5
2,818,043	-		Pf6N2E2_2380	0.13	-1.3
2,818,043	-		Pf6N2E2_2380	0.13	-1.4
2,818,043	-		Pf6N2E2_2380	0.13	+0.6
2,818,043	-		Pf6N2E2_2380	0.13	-2.0
2,818,043	-		Pf6N2E2_2380	0.13	+0.8
2,818,043	-		Pf6N2E2_2380	0.13	+0.2
2,818,043	-		Pf6N2E2_2380	0.13	-1.1
2,818,043	-		Pf6N2E2_2380	0.13	-0.1
2,818,045	+		Pf6N2E2_2380	0.13	-0.7
2,818,045	+		Pf6N2E2_2380	0.13	+0.2
2,818,045	+		Pf6N2E2_2380	0.13	+0.6
2,818,046	-		Pf6N2E2_2380	0.13	-1.8
2,818,046	-		Pf6N2E2_2380	0.13	+0.1
2,818,046	-		Pf6N2E2_2380	0.13	+0.5
2,818,046	-		Pf6N2E2_2380	0.13	-1.1
2,818,046	-		Pf6N2E2_2380	0.13	+1.5
2,818,046	-		Pf6N2E2_2380	0.13	-0.2
2,818,046	-		Pf6N2E2_2380	0.13	-0.9
2,818,086	+		Pf6N2E2_2380	0.14	+0.9
2,818,136	-		Pf6N2E2_2380	0.16	+1.5
2,818,136	-		Pf6N2E2_2380	0.16	+0.2