Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2201

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,606,503	-		Pf6N2E2_2199	0.78	-0.4
2,606,503	-		Pf6N2E2_2199	0.78	-0.5
2,606,629	-		Pf6N2E2_2199	0.90	-0.1
2,606,806	+				-3.0
2,606,822	-				+0.5
2,606,844	+				-0.8
2,606,908	+				+0.0
2,606,909	-				+0.3
2,607,131	+		Pf6N2E2_2200	0.44	-0.2
2,607,327	+		Pf6N2E2_2200	0.82	+1.5
2,607,451	+				-1.3
2,607,451	+				-3.3
2,607,451	+				-1.1
2,607,451	+				-3.1
2,607,452	-				-1.1
2,607,452	-				+1.5
2,607,452	-				-1.8
2,607,499	+		Pf6N2E2_2201	0.12	-2.5
2,607,499	+		Pf6N2E2_2201	0.12	-1.9
2,607,499	+		Pf6N2E2_2201	0.12	-2.3
2,607,500	-		Pf6N2E2_2201	0.12	-1.1
2,607,738	-		Pf6N2E2_2201	0.43	-0.5
2,607,863	-		Pf6N2E2_2201	0.60	-2.2
2,608,000	+		Pf6N2E2_2201	0.78	-0.6
2,608,000	+		Pf6N2E2_2201	0.78	+0.9
2,608,001	-		Pf6N2E2_2201	0.78	+1.5
2,608,075	+		Pf6N2E2_2201	0.88	-0.1
2,608,093	+				+0.3
2,608,094	-				-1.3
2,608,094	-				-0.3
2,608,094	-				+0.5
2,608,099	+				-0.1
2,608,099	+				-0.0
2,608,099	+				-0.4
2,608,099	+				+0.3
2,608,099	+				-1.1
2,608,099	+				+1.5
2,608,100	-				-0.4
2,608,100	-				+0.1
2,608,100	-				+0.2
2,608,100	-				-0.2
2,608,100	-				+0.2
2,608,100	-				-2.5
2,608,100	-				+0.4
2,608,100	-				+0.4
2,608,143	+				+0.0
2,608,144	-				-1.1
2,608,144	-				-0.6
2,608,489	+				-1.2
2,608,490	-				+1.1
2,608,490	-				+1.5
2,608,490	-				-0.0
2,608,490	-				-1.5
2,608,490	-				-1.1
2,608,511	+				+0.4
2,608,524	+				-0.1
2,608,566	-				-0.2
2,608,566	-				+0.1
2,608,566	-				+0.1
2,608,566	-				+0.3
2,608,566	-				+0.5
2,608,566	-				+0.1
2,608,566	-				+0.2
2,608,566	-				-0.2
2,608,566	-				-0.2
2,608,566	-				-0.2
2,608,566	-				+0.8
2,608,566	-				-0.1
2,608,570	-				-0.1