Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2186

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,589,241	+				-2.0
2,589,275	+				-0.5
2,589,276	-				-0.2
2,589,339	+		Pf6N2E2_2185	0.15	+0.6
2,589,339	+		Pf6N2E2_2185	0.15	+0.2
2,589,339	+		Pf6N2E2_2185	0.15	+0.4
2,589,339	+		Pf6N2E2_2185	0.15	-0.5
2,589,340	-		Pf6N2E2_2185	0.15	-0.2
2,589,486	-		Pf6N2E2_2185	0.32	+0.6
2,589,737	+		Pf6N2E2_2185	0.61	-0.7
2,589,738	-		Pf6N2E2_2185	0.61	-0.1
2,589,738	-		Pf6N2E2_2185	0.61	+0.9
2,589,738	-		Pf6N2E2_2185	0.61	-0.7
2,589,738	-		Pf6N2E2_2185	0.61	+0.1
2,589,738	-		Pf6N2E2_2185	0.61	+0.6
2,589,738	-		Pf6N2E2_2185	0.61	-0.4
2,589,842	+		Pf6N2E2_2185	0.73	+0.8
2,589,842	+		Pf6N2E2_2185	0.73	-0.3
2,589,842	+		Pf6N2E2_2185	0.73	+0.5
2,589,842	+		Pf6N2E2_2185	0.73	-0.5
2,589,842	+		Pf6N2E2_2185	0.73	+0.3
2,589,843	-		Pf6N2E2_2185	0.73	+0.5
2,589,858	+		Pf6N2E2_2185	0.75	+0.2
2,589,859	-		Pf6N2E2_2185	0.75	-0.5
2,589,892	-		Pf6N2E2_2185	0.79	-0.1
2,589,892	-		Pf6N2E2_2185	0.79	-0.8
2,589,892	-		Pf6N2E2_2185	0.79	-0.2
2,589,944	+		Pf6N2E2_2185	0.84	+0.3
2,589,944	+		Pf6N2E2_2185	0.84	-0.5
2,589,944	+		Pf6N2E2_2185	0.84	-0.2
2,589,945	-		Pf6N2E2_2185	0.85	+0.5
2,589,945	-		Pf6N2E2_2185	0.85	+0.8
2,589,945	-		Pf6N2E2_2185	0.85	+2.5
2,589,945	-		Pf6N2E2_2185	0.85	-1.1
2,589,945	-		Pf6N2E2_2185	0.85	-0.4
2,590,019	+				-0.0
2,590,019	+				+0.1
2,590,020	-				+0.6
2,590,020	-				-0.6
2,590,020	-				+0.5
2,590,020	-				+0.7
2,590,020	-				-0.6
2,590,037	+				+0.1
2,590,037	+				-0.4
2,590,037	+				+0.9
2,590,037	+				+0.1
2,590,037	+				+0.5
2,590,037	+				-0.5
2,590,038	-				+0.4
2,590,038	-				+0.7
2,590,038	-				-0.1
2,590,038	-				-0.1
2,590,058	+				-0.2
2,590,059	-				-0.5
2,590,059	-				+0.4
2,590,059	-				-0.8
2,590,059	-				+1.5
2,590,077	-				-1.1
2,590,224	-				-0.5
2,590,269	+				-0.7
2,590,269	+				-1.5
2,590,269	+				-0.0
2,590,269	+				-1.2
2,590,269	+				+1.2
2,590,269	+				-1.5
2,590,269	+				+1.5
2,590,269	+				-0.5
2,590,269	+				-1.1
2,590,269	+				-0.3
2,590,270	-				-0.4
2,590,270	-				-0.1
2,590,270	-				-0.2
2,590,270	-				-0.5
2,590,270	-				-0.3
2,590,353	+				-0.8
2,590,353	+				-1.2
2,590,354	-				-0.6
2,590,354	-				-1.6
2,590,354	-				-0.2
2,590,354	-				-1.7
2,590,354	-				-1.0
2,590,359	+		Pf6N2E2_2186	0.10	-0.1
2,590,359	+		Pf6N2E2_2186	0.10	-0.8
2,590,359	+		Pf6N2E2_2186	0.10	-1.9
2,590,359	+		Pf6N2E2_2186	0.10	-2.2
2,590,360	-		Pf6N2E2_2186	0.10	-1.9
2,590,360	-		Pf6N2E2_2186	0.10	-1.8
2,590,360	-		Pf6N2E2_2186	0.10	-1.4
2,590,360	-		Pf6N2E2_2186	0.10	-0.3
2,590,360	-		Pf6N2E2_2186	0.10	-0.1
2,590,360	-		Pf6N2E2_2186	0.10	-2.5
2,590,507	-		Pf6N2E2_2186	0.22	+1.5
2,590,507	-		Pf6N2E2_2186	0.22	-0.1
2,590,507	-		Pf6N2E2_2186	0.22	-0.5
2,590,507	-		Pf6N2E2_2186	0.22	-0.6
2,591,232	+		Pf6N2E2_2186	0.81	-1.1
2,591,398	-				-1.9
2,591,451	+				+0.5
2,591,495	-				+0.9
2,591,495	-				+0.1
2,591,495	-				-1.0
2,591,495	-				-1.0
2,591,495	-				+0.7
2,591,495	-				+0.8
2,591,495	-				+0.4
2,591,513	+				+1.5
2,591,513	+				+1.5
2,591,514	-				+0.1
2,591,537	-				-0.3
2,591,576	-				-0.9
2,591,627	+				+0.9
2,591,628	-				+0.5
2,591,693	+				+0.1
2,591,693	+				+0.0
2,591,693	+				-0.8
2,591,693	+				+0.5
2,591,694	-				-0.0
2,592,013	+		Pf6N2E2_2187	0.40	-0.9
2,592,013	+		Pf6N2E2_2187	0.40	-0.5
2,592,014	-		Pf6N2E2_2187	0.40	+0.8
2,592,014	-		Pf6N2E2_2187	0.40	-0.5
2,592,014	-		Pf6N2E2_2187	0.40	-1.9
2,592,123	+		Pf6N2E2_2187	0.52	-0.7
2,592,152	+		Pf6N2E2_2187	0.55	+0.9
2,592,152	+		Pf6N2E2_2187	0.55	-0.7
2,592,153	-		Pf6N2E2_2187	0.55	+0.2
2,592,153	-		Pf6N2E2_2187	0.55	-0.3
2,592,215	+		Pf6N2E2_2187	0.62	-0.4
2,592,238	+		Pf6N2E2_2187	0.64	-0.5
2,592,238	+		Pf6N2E2_2187	0.64	+0.4
2,592,239	-		Pf6N2E2_2187	0.64	+0.9
2,592,239	-		Pf6N2E2_2187	0.64	+0.1
2,592,266	+		Pf6N2E2_2187	0.67	+3.5
2,592,267	-		Pf6N2E2_2187	0.67	+0.1
2,592,267	-		Pf6N2E2_2187	0.67	-0.2
2,592,267	-		Pf6N2E2_2187	0.67	-0.6
2,592,329	+		Pf6N2E2_2187	0.74	-1.2
2,592,329	+		Pf6N2E2_2187	0.74	+0.3
2,592,329	+		Pf6N2E2_2187	0.74	-0.0
2,592,329	+		Pf6N2E2_2187	0.74	-0.3
2,592,329	+		Pf6N2E2_2187	0.74	-0.8
2,592,330	-		Pf6N2E2_2187	0.74	+0.9
2,592,330	-		Pf6N2E2_2187	0.74	+0.2