Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1919

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,272,128	-		Pf6N2E2_1918	0.33	-0.1
2,272,216	-		Pf6N2E2_1918	0.41	-0.1
2,272,216	-		Pf6N2E2_1918	0.41	-0.4
2,272,216	-		Pf6N2E2_1918	0.41	-0.3
2,272,221	+		Pf6N2E2_1918	0.41	-0.7
2,272,222	-		Pf6N2E2_1918	0.42	-0.2
2,272,222	-		Pf6N2E2_1918	0.42	-0.6
2,272,222	-		Pf6N2E2_1918	0.42	+0.2
2,272,222	-		Pf6N2E2_1918	0.42	-0.2
2,272,231	-		Pf6N2E2_1918	0.42	+1.6
2,272,398	+		Pf6N2E2_1918	0.57	+0.4
2,272,436	-				-1.7
2,272,605	+		Pf6N2E2_1918	0.75	-0.1
2,272,628	-		Pf6N2E2_1918	0.76	-0.4
2,272,665	+		Pf6N2E2_1918	0.80	+0.1
2,272,665	+		Pf6N2E2_1918	0.80	-1.3
2,272,665	+		Pf6N2E2_1918	0.80	+0.1
2,272,665	+		Pf6N2E2_1918	0.80	-0.1
2,272,665	+		Pf6N2E2_1918	0.80	-0.1
2,272,666	-		Pf6N2E2_1918	0.80	+0.0
2,272,666	-		Pf6N2E2_1918	0.80	-0.2
2,272,666	-		Pf6N2E2_1918	0.80	-0.5
2,272,666	-		Pf6N2E2_1918	0.80	-0.2
2,272,737	+		Pf6N2E2_1918	0.86	+0.5
2,272,737	+		Pf6N2E2_1918	0.86	+3.2
2,272,738	-		Pf6N2E2_1918	0.86	-0.3
2,272,738	-		Pf6N2E2_1918	0.86	-0.7
2,272,738	-		Pf6N2E2_1918	0.86	+0.0
2,272,738	-		Pf6N2E2_1918	0.86	+0.0
2,272,738	-		Pf6N2E2_1918	0.86	-0.7
2,272,738	-		Pf6N2E2_1918	0.86	-0.5
2,272,738	-		Pf6N2E2_1918	0.86	+0.6
2,272,847	-				-0.3
2,272,973	+				+1.0
2,272,973	+				+0.5
2,273,018	+				-0.5
2,273,019	-				-0.8
2,273,127	+				+0.6
2,273,149	+				+0.2
2,273,149	+				-0.1
2,273,149	+				+1.6
2,273,150	-				+0.7
2,273,334	+		Pf6N2E2_1919	0.15	-0.4
2,273,431	-		Pf6N2E2_1919	0.22	+0.0
2,273,431	-		Pf6N2E2_1919	0.22	-0.9
2,273,431	-		Pf6N2E2_1919	0.22	+0.0
2,273,482	-		Pf6N2E2_1919	0.26	-0.9
2,273,482	-		Pf6N2E2_1919	0.26	-1.4
2,273,617	-		Pf6N2E2_1919	0.35	+0.1
2,273,659	+		Pf6N2E2_1919	0.38	-1.2
2,273,660	-		Pf6N2E2_1919	0.38	-1.1
2,273,664	-		Pf6N2E2_1919	0.38	-0.4
2,273,664	-		Pf6N2E2_1919	0.38	-1.3
2,273,995	-		Pf6N2E2_1919	0.60	+0.2
2,274,259	-		Pf6N2E2_1919	0.78	+1.6
2,274,259	-		Pf6N2E2_1919	0.78	+1.3
2,274,341	+		Pf6N2E2_1919	0.84	-1.1
2,274,341	+		Pf6N2E2_1919	0.84	+0.4
2,274,341	+		Pf6N2E2_1919	0.84	-1.1
2,274,342	-		Pf6N2E2_1919	0.84	+1.6
2,274,344	+		Pf6N2E2_1919	0.84	+0.6
2,274,345	-		Pf6N2E2_1919	0.84	-0.7
2,274,345	-		Pf6N2E2_1919	0.84	+1.3
2,274,345	-		Pf6N2E2_1919	0.84	-0.3
2,274,557	+				+0.4
2,274,558	-				-0.8
2,274,558	-				-1.2
2,274,558	-				-1.6
2,274,664	-				+0.6
2,274,664	-				+0.2
2,274,760	-		Pf6N2E2_1920	0.45	+1.2
2,274,760	-		Pf6N2E2_1920	0.45	+0.8
2,274,777	-		Pf6N2E2_1920	0.54	-0.2
2,274,777	-		Pf6N2E2_1920	0.54	-1.4
2,274,896	+				+2.2
2,274,935	+		Pf6N2E2_1921	0.29	+0.9
2,275,033	-				-0.7
2,275,033	-				-0.2
2,275,033	-				-0.5
2,275,094	+				-0.7
2,275,115	-				-1.5
2,275,178	-				+1.2
2,275,216	+				+1.6
2,275,257	-		Pf6N2E2_1922	0.11	+1.8
2,275,257	-		Pf6N2E2_1922	0.11	+0.4
2,275,257	-		Pf6N2E2_1922	0.11	-0.2
2,275,299	+		Pf6N2E2_1922	0.13	+0.0
2,275,299	+		Pf6N2E2_1922	0.13	+0.5
2,275,335	-		Pf6N2E2_1922	0.14	+0.8
2,275,430	-		Pf6N2E2_1922	0.19	+0.9
2,275,501	+		Pf6N2E2_1922	0.22	-0.7
2,275,502	-		Pf6N2E2_1922	0.22	-0.2
2,275,541	-		Pf6N2E2_1922	0.24	+0.3