Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1770

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
2,090,425	+		Pf6N2E2_1768	0.61	+0.3
2,090,425	+		Pf6N2E2_1768	0.61	+0.4
2,090,426	-		Pf6N2E2_1768	0.61	+0.3
2,090,476	+		Pf6N2E2_1768	0.64	+0.6
2,090,696	+		Pf6N2E2_1768	0.80	-1.4
2,090,696	+		Pf6N2E2_1768	0.80	-3.0
2,090,843	-				+1.0
2,090,883	-				-0.4
2,090,883	-				-0.8
2,091,220	+		Pf6N2E2_1769	0.70	+1.6
2,091,220	+		Pf6N2E2_1769	0.70	-0.0
2,091,220	+		Pf6N2E2_1769	0.70	+0.7
2,091,220	+		Pf6N2E2_1769	0.70	+0.3
2,091,220	+		Pf6N2E2_1769	0.70	+1.6
2,091,220	+		Pf6N2E2_1769	0.70	-1.2
2,091,221	-		Pf6N2E2_1769	0.71	+1.6
2,091,221	-		Pf6N2E2_1769	0.71	+0.5
2,091,221	-		Pf6N2E2_1769	0.71	+0.1
2,091,221	-		Pf6N2E2_1769	0.71	-0.4
2,091,224	+		Pf6N2E2_1769	0.72	+1.1
2,091,224	+		Pf6N2E2_1769	0.72	-0.6
2,091,225	-		Pf6N2E2_1769	0.72	+0.6
2,091,225	-		Pf6N2E2_1769	0.72	-2.1
2,091,225	-		Pf6N2E2_1769	0.72	-0.0
2,091,225	-		Pf6N2E2_1769	0.72	+0.2
2,091,280	+		Pf6N2E2_1769	0.88	-0.4
2,091,303	+				-0.2
2,091,304	-				+1.0
2,091,304	-				+1.6
2,091,304	-				+0.1
2,091,308	-				+1.4
2,091,388	-				-1.2
2,091,434	+				-0.8
2,091,434	+				-1.0
2,091,434	+				+0.6
2,091,449	+				+1.0
2,091,507	-		Pf6N2E2_1770	0.13	+1.2
2,091,507	-		Pf6N2E2_1770	0.13	+0.5
2,091,729	-		Pf6N2E2_1770	0.34	+0.1
2,091,729	-		Pf6N2E2_1770	0.34	+0.2
2,091,792	+		Pf6N2E2_1770	0.40	+1.6
2,091,792	+		Pf6N2E2_1770	0.40	-0.6
2,091,792	+		Pf6N2E2_1770	0.40	+1.4
2,091,793	-		Pf6N2E2_1770	0.40	+0.2
2,091,793	-		Pf6N2E2_1770	0.40	+0.6
2,091,905	+		Pf6N2E2_1770	0.50	-2.5
2,091,906	-		Pf6N2E2_1770	0.50	+0.2
2,091,906	-		Pf6N2E2_1770	0.50	+0.5
2,091,906	-		Pf6N2E2_1770	0.50	-0.8
2,091,945	-		Pf6N2E2_1770	0.54	+2.2
2,091,983	+		Pf6N2E2_1770	0.58	-0.0
2,091,993	-		Pf6N2E2_1770	0.58	+1.6
2,091,993	-		Pf6N2E2_1770	0.58	-0.8
2,092,010	+		Pf6N2E2_1770	0.60	-0.8
2,092,010	+		Pf6N2E2_1770	0.60	-1.8
2,092,011	-		Pf6N2E2_1770	0.60	-0.4
2,092,122	-		Pf6N2E2_1770	0.70	+0.7
2,092,217	+		Pf6N2E2_1770	0.79	-0.2
2,092,217	+		Pf6N2E2_1770	0.79	-0.7
2,092,217	+		Pf6N2E2_1770	0.79	-0.8
2,092,217	+		Pf6N2E2_1770	0.79	+1.4
2,092,217	+		Pf6N2E2_1770	0.79	+0.6
2,092,218	-		Pf6N2E2_1770	0.79	-0.3
2,092,266	-		Pf6N2E2_1770	0.84	+1.6
2,092,331	+				+0.9
2,092,365	+				+0.7
2,092,423	+				-0.3
2,092,424	-				+0.4
2,092,532	-				+2.1
2,092,639	-		Pf6N2E2_1771	0.15	+0.6
2,092,641	-		Pf6N2E2_1771	0.15	-1.2
2,092,641	-		Pf6N2E2_1771	0.15	+0.0
2,092,657	-		Pf6N2E2_1771	0.17	+1.6
2,092,668	-		Pf6N2E2_1771	0.18	-0.1
2,092,668	-		Pf6N2E2_1771	0.18	+1.6
2,092,668	-		Pf6N2E2_1771	0.18	+0.2
2,092,668	-		Pf6N2E2_1771	0.18	+0.1
2,092,903	+		Pf6N2E2_1771	0.42	-0.4
2,092,903	+		Pf6N2E2_1771	0.42	+0.7
2,092,904	-		Pf6N2E2_1771	0.42	-0.9
2,093,014	-		Pf6N2E2_1771	0.53	-1.3
2,093,022	+		Pf6N2E2_1771	0.54	+0.6
2,093,022	+		Pf6N2E2_1771	0.54	+1.0
2,093,022	+		Pf6N2E2_1771	0.54	-0.1
2,093,022	+		Pf6N2E2_1771	0.54	-0.7
2,093,022	+		Pf6N2E2_1771	0.54	+0.9
2,093,022	+		Pf6N2E2_1771	0.54	+0.3
2,093,023	-		Pf6N2E2_1771	0.54	-0.5
2,093,023	-		Pf6N2E2_1771	0.54	+0.7
2,093,023	-		Pf6N2E2_1771	0.54	-0.0
2,093,023	-		Pf6N2E2_1771	0.54	-1.4
2,093,049	-		Pf6N2E2_1771	0.56	+0.7
2,093,088	-		Pf6N2E2_1771	0.60	-0.8
2,093,088	-		Pf6N2E2_1771	0.60	-0.8
2,093,088	-		Pf6N2E2_1771	0.60	+0.6
2,093,187	+		Pf6N2E2_1771	0.71	-0.3
2,093,187	+		Pf6N2E2_1771	0.71	+0.4
2,093,188	-		Pf6N2E2_1771	0.71	-1.0
2,093,329	-		Pf6N2E2_1771	0.85	-0.4
2,093,329	-		Pf6N2E2_1771	0.85	+1.6