Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1517

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
1,771,778	+				-1.3
1,771,779	-				-2.1
1,771,779	-				-0.4
1,771,779	-				-0.7
1,771,793	+				-0.8
1,771,794	-				+0.7
1,772,009	-		Pf6N2E2_1516	0.26	-0.3
1,772,009	-		Pf6N2E2_1516	0.26	+0.9
1,772,052	-		Pf6N2E2_1516	0.32	-0.2
1,772,211	-		Pf6N2E2_1516	0.53	-0.0
1,772,211	-		Pf6N2E2_1516	0.53	-0.6
1,772,325	-		Pf6N2E2_1516	0.68	-0.4
1,772,347	-		Pf6N2E2_1516	0.71	-0.0
1,772,360	-		Pf6N2E2_1516	0.73	+0.6
1,772,588	+				+1.4
1,772,713	+				+0.6
1,772,714	-				+0.1
1,773,077	+		Pf6N2E2_1517	0.26	-0.7
1,773,078	-		Pf6N2E2_1517	0.26	+1.0
1,773,108	-		Pf6N2E2_1517	0.28	-0.5
1,773,108	-		Pf6N2E2_1517	0.28	+0.1
1,773,133	+		Pf6N2E2_1517	0.29	+0.9
1,773,133	+		Pf6N2E2_1517	0.29	-0.3
1,773,136	+		Pf6N2E2_1517	0.30	-0.8
1,773,137	-		Pf6N2E2_1517	0.30	+1.1
1,773,414	+		Pf6N2E2_1517	0.48	+0.2
1,773,415	-		Pf6N2E2_1517	0.48	+0.3
1,773,415	-		Pf6N2E2_1517	0.48	+0.7
1,773,415	-		Pf6N2E2_1517	0.48	-0.2
1,773,415	-		Pf6N2E2_1517	0.48	-0.6
1,773,821	+		Pf6N2E2_1517	0.76	+0.6
1,773,866	+		Pf6N2E2_1517	0.79	+0.2
1,773,866	+		Pf6N2E2_1517	0.79	-0.5
1,773,884	+		Pf6N2E2_1517	0.80	-0.4
1,773,884	+		Pf6N2E2_1517	0.80	-0.3
1,773,884	+		Pf6N2E2_1517	0.80	+0.1
1,773,918	-		Pf6N2E2_1517	0.82	+1.2
1,773,996	-		Pf6N2E2_1517	0.87	-0.6
1,774,014	-		Pf6N2E2_1517	0.88	-0.4
1,774,038	-				-0.6
1,774,185	-				-0.2
1,774,662	+		Pf6N2E2_1518	0.72	+0.2
1,774,873	+				-0.3
1,774,874	-				+0.4
1,775,039	-				+1.6