Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1405

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1403 and Pf6N2E2_1404 are separated by 30 nucleotidesPf6N2E2_1404 and Pf6N2E2_1405 overlap by 4 nucleotidesPf6N2E2_1405 and Pf6N2E2_1406 overlap by 4 nucleotides Pf6N2E2_1403 - Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL, at 1,643,699 to 1,644,226 _1403 Pf6N2E2_1404 - Nitrous oxide reductase maturation transmembrane protein NosY, at 1,644,257 to 1,645,087 _1404 Pf6N2E2_1405 - Nitrous oxide reductase maturation protein NosF (ATPase), at 1,645,084 to 1,646,001 _1405 Pf6N2E2_1406 - Nitrous oxide reductase maturation protein NosD, at 1,645,998 to 1,647,311 _1406 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -2 -1 0 1 2at 1644.213 kb on + strandat 1644.213 kb on + strandat 1644.214 kb on - strandat 1644.214 kb on - strandat 1644.214 kb on - strandat 1644.314 kb on + strandat 1644.315 kb on - strandat 1644.603 kb on + strand, within Pf6N2E2_1404at 1644.603 kb on + strand, within Pf6N2E2_1404at 1644.604 kb on - strand, within Pf6N2E2_1404at 1644.604 kb on - strand, within Pf6N2E2_1404at 1644.810 kb on + strand, within Pf6N2E2_1404at 1644.865 kb on - strand, within Pf6N2E2_1404at 1645.087 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.121 kb on + strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.122 kb on - strandat 1645.206 kb on + strand, within Pf6N2E2_1405at 1645.207 kb on - strand, within Pf6N2E2_1405at 1645.499 kb on + strand, within Pf6N2E2_1405at 1645.499 kb on + strand, within Pf6N2E2_1405at 1645.500 kb on - strand, within Pf6N2E2_1405at 1645.616 kb on + strand, within Pf6N2E2_1405at 1645.617 kb on - strand, within Pf6N2E2_1405at 1645.617 kb on - strand, within Pf6N2E2_1405at 1645.745 kb on + strand, within Pf6N2E2_1405at 1645.745 kb on + strand, within Pf6N2E2_1405at 1645.770 kb on - strandat 1645.965 kb on - strandat 1645.965 kb on - strandat 1646.165 kb on - strand, within Pf6N2E2_1406at 1646.260 kb on + strand, within Pf6N2E2_1406at 1646.261 kb on - strand, within Pf6N2E2_1406at 1646.261 kb on - strand, within Pf6N2E2_1406at 1646.308 kb on + strand, within Pf6N2E2_1406at 1646.309 kb on - strand, within Pf6N2E2_1406at 1646.309 kb on - strand, within Pf6N2E2_1406at 1646.309 kb on - strand, within Pf6N2E2_1406at 1646.441 kb on - strand, within Pf6N2E2_1406at 1646.536 kb on + strand, within Pf6N2E2_1406at 1646.536 kb on + strand, within Pf6N2E2_1406at 1646.536 kb on + strand, within Pf6N2E2_1406at 1646.537 kb on - strand, within Pf6N2E2_1406at 1646.537 kb on - strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.545 kb on + strand, within Pf6N2E2_1406at 1646.640 kb on - strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.686 kb on + strand, within Pf6N2E2_1406at 1646.687 kb on - strand, within Pf6N2E2_1406at 1646.687 kb on - strand, within Pf6N2E2_1406at 1646.755 kb on + strand, within Pf6N2E2_1406at 1646.755 kb on + strand, within Pf6N2E2_1406at 1646.755 kb on + strand, within Pf6N2E2_1406at 1646.756 kb on - strand, within Pf6N2E2_1406at 1646.756 kb on - strand, within Pf6N2E2_1406at 1646.809 kb on - strand, within Pf6N2E2_1406at 1646.815 kb on + strand, within Pf6N2E2_1406

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
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1,644,213 + +1.0
1,644,213 + -0.4
1,644,214 - -1.7
1,644,214 - +0.0
1,644,214 - -0.3
1,644,314 + +0.3
1,644,315 - -1.0
1,644,603 + Pf6N2E2_1404 0.42 -0.4
1,644,603 + Pf6N2E2_1404 0.42 -0.6
1,644,604 - Pf6N2E2_1404 0.42 -0.4
1,644,604 - Pf6N2E2_1404 0.42 -1.8
1,644,810 + Pf6N2E2_1404 0.67 -0.0
1,644,865 - Pf6N2E2_1404 0.73 -0.2
1,645,087 + -0.7
1,645,121 + -0.1
1,645,121 + +0.9
1,645,121 + +0.6
1,645,121 + -0.1
1,645,121 + +0.1
1,645,121 + +0.1
1,645,121 + +0.6
1,645,121 + +1.6
1,645,122 - -0.5
1,645,122 - -1.0
1,645,122 - +1.9
1,645,122 - -0.8
1,645,122 - +0.7
1,645,122 - -0.8
1,645,122 - +1.3
1,645,206 + Pf6N2E2_1405 0.13 +0.6
1,645,207 - Pf6N2E2_1405 0.13 -1.8
1,645,499 + Pf6N2E2_1405 0.45 -0.6
1,645,499 + Pf6N2E2_1405 0.45 +0.0
1,645,500 - Pf6N2E2_1405 0.45 -0.5
1,645,616 + Pf6N2E2_1405 0.58 -0.3
1,645,617 - Pf6N2E2_1405 0.58 +1.0
1,645,617 - Pf6N2E2_1405 0.58 +0.6
1,645,745 + Pf6N2E2_1405 0.72 -0.6
1,645,745 + Pf6N2E2_1405 0.72 -0.5
1,645,770 - +1.6
1,645,965 - -0.0
1,645,965 - +1.3
1,646,165 - Pf6N2E2_1406 0.13 +0.1
1,646,260 + Pf6N2E2_1406 0.20 -1.4
1,646,261 - Pf6N2E2_1406 0.20 -0.5
1,646,261 - Pf6N2E2_1406 0.20 +0.6
1,646,308 + Pf6N2E2_1406 0.24 +0.0
1,646,309 - Pf6N2E2_1406 0.24 -0.9
1,646,309 - Pf6N2E2_1406 0.24 -1.6
1,646,309 - Pf6N2E2_1406 0.24 -0.7
1,646,441 - Pf6N2E2_1406 0.34 -0.5
1,646,536 + Pf6N2E2_1406 0.41 -0.6
1,646,536 + Pf6N2E2_1406 0.41 -1.6
1,646,536 + Pf6N2E2_1406 0.41 +0.4
1,646,537 - Pf6N2E2_1406 0.41 +0.6
1,646,537 - Pf6N2E2_1406 0.41 +0.3
1,646,545 + Pf6N2E2_1406 0.42 +0.1
1,646,545 + Pf6N2E2_1406 0.42 +0.2
1,646,545 + Pf6N2E2_1406 0.42 -1.4
1,646,545 + Pf6N2E2_1406 0.42 -0.4
1,646,545 + Pf6N2E2_1406 0.42 +0.5
1,646,545 + Pf6N2E2_1406 0.42 -1.3
1,646,640 - Pf6N2E2_1406 0.49 +0.0
1,646,686 + Pf6N2E2_1406 0.52 +0.4
1,646,686 + Pf6N2E2_1406 0.52 +0.1
1,646,686 + Pf6N2E2_1406 0.52 -1.0
1,646,686 + Pf6N2E2_1406 0.52 -0.4
1,646,686 + Pf6N2E2_1406 0.52 +1.0
1,646,686 + Pf6N2E2_1406 0.52 -1.0
1,646,687 - Pf6N2E2_1406 0.52 +0.3
1,646,687 - Pf6N2E2_1406 0.52 +1.6
1,646,755 + Pf6N2E2_1406 0.58 -0.6
1,646,755 + Pf6N2E2_1406 0.58 -0.1
1,646,755 + Pf6N2E2_1406 0.58 +0.3
1,646,756 - Pf6N2E2_1406 0.58 -0.4
1,646,756 - Pf6N2E2_1406 0.58 -1.3
1,646,809 - Pf6N2E2_1406 0.62 -0.6
1,646,815 + Pf6N2E2_1406 0.62 +0.6

Or see this region's nucleotide sequence