Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1338

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
1,573,335	+		Pf6N2E2_1337	0.52	+0.6
1,573,335	+		Pf6N2E2_1337	0.52	-2.5
1,573,484	-		Pf6N2E2_1337	0.68	+0.0
1,573,624	+		Pf6N2E2_1337	0.83	-1.6
1,573,624	+		Pf6N2E2_1337	0.83	-0.0
1,573,624	+		Pf6N2E2_1337	0.83	+0.3
1,573,624	+		Pf6N2E2_1337	0.83	+1.2
1,573,625	-		Pf6N2E2_1337	0.83	-0.2
1,573,713	+				-0.6
1,573,742	-				+0.2
1,573,742	-				+0.8
1,573,815	+				+0.7
1,573,815	+				+0.3
1,573,820	-				+1.6
1,573,971	+				+0.1
1,573,971	+				+0.3
1,573,971	+				-0.7
1,573,971	+				+0.6
1,574,469	+		Pf6N2E2_1338	0.47	+1.6
1,574,469	+		Pf6N2E2_1338	0.47	-0.0
1,574,470	-		Pf6N2E2_1338	0.47	+0.4
1,574,470	-		Pf6N2E2_1338	0.47	-0.8
1,574,470	-		Pf6N2E2_1338	0.47	-0.1
1,574,470	-		Pf6N2E2_1338	0.47	-0.1
1,574,520	+		Pf6N2E2_1338	0.52	+0.6
1,574,521	-		Pf6N2E2_1338	0.52	-0.8
1,574,521	-		Pf6N2E2_1338	0.52	+2.6
1,574,619	+		Pf6N2E2_1338	0.62	+0.0
1,574,620	-		Pf6N2E2_1338	0.62	+1.2
1,574,643	+		Pf6N2E2_1338	0.64	+1.6
1,574,643	+		Pf6N2E2_1338	0.64	-0.4
1,574,643	+		Pf6N2E2_1338	0.64	+0.6
1,574,643	+		Pf6N2E2_1338	0.64	+0.0
1,574,644	-		Pf6N2E2_1338	0.64	+1.0
1,574,644	-		Pf6N2E2_1338	0.64	+0.3
1,574,682	+		Pf6N2E2_1338	0.68	-1.0
1,574,682	+		Pf6N2E2_1338	0.68	+0.4
1,574,683	-		Pf6N2E2_1338	0.68	-0.4
1,574,683	-		Pf6N2E2_1338	0.68	+0.4
1,574,683	-		Pf6N2E2_1338	0.68	+0.3
1,574,683	-		Pf6N2E2_1338	0.68	+1.6
1,574,683	-		Pf6N2E2_1338	0.68	-0.2
1,574,835	+		Pf6N2E2_1338	0.83	+0.8
1,574,835	+		Pf6N2E2_1338	0.83	+0.0
1,574,836	-		Pf6N2E2_1338	0.83	+1.0
1,574,887	-		Pf6N2E2_1338	0.88	+1.3
1,574,993	-				+1.6
1,575,082	-				+0.9
1,575,082	-				-0.8
1,575,085	+				-0.6
1,575,102	-				+0.5
1,575,223	+				-0.8
1,575,223	+				+2.6
1,575,224	-				+0.0
1,575,224	-				-1.4
1,575,224	-				-0.9
1,575,280	+				+0.8
1,575,280	+				+0.2
1,575,281	-				+0.0
1,575,539	-		Pf6N2E2_1339	0.29	-1.2