Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1296
Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A |
---|---|---|---|---|---|
remove | |||||
1,530,385 | + | Pf6N2E2_1295 | 0.32 | -3.0 | |
1,530,433 | + | Pf6N2E2_1295 | 0.36 | -3.2 | |
1,530,434 | - | Pf6N2E2_1295 | 0.36 | -2.5 | |
1,530,434 | - | Pf6N2E2_1295 | 0.36 | -3.2 | |
1,530,593 | + | Pf6N2E2_1295 | 0.47 | -0.4 | |
1,530,593 | + | Pf6N2E2_1295 | 0.47 | +0.1 | |
1,530,670 | - | Pf6N2E2_1295 | 0.53 | -0.4 | |
1,531,164 | - | Pf6N2E2_1295 | 0.89 | -1.9 | |
1,531,605 | - | Pf6N2E2_1296 | 0.42 | -3.2 | |
1,531,605 | - | Pf6N2E2_1296 | 0.42 | -1.5 | |
1,531,613 | + | Pf6N2E2_1296 | 0.43 | +1.6 | |
1,531,619 | + | Pf6N2E2_1296 | 0.44 | -2.4 | |
1,531,620 | - | Pf6N2E2_1296 | 0.44 | -2.5 | |
1,531,659 | + | Pf6N2E2_1296 | 0.50 | +0.6 | |
1,531,660 | - | Pf6N2E2_1296 | 0.51 | -2.9 | |
1,531,727 | + | Pf6N2E2_1296 | 0.61 | -2.7 | |
1,531,727 | + | Pf6N2E2_1296 | 0.61 | -2.2 | |
1,531,727 | + | Pf6N2E2_1296 | 0.61 | -2.1 | |
1,531,727 | + | Pf6N2E2_1296 | 0.61 | -2.4 | |
1,531,728 | - | Pf6N2E2_1296 | 0.61 | -2.1 | |
1,531,941 | - | -2.1 | |||
1,532,025 | + | +0.4 | |||
1,532,096 | + | -0.1 | |||
1,532,944 | + | +1.6 | |||
1,532,945 | - | -1.5 | |||
1,532,953 | - | -0.1 | |||
1,532,953 | - | +1.2 |
Or see this region's nucleotide sequence