Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1206

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
1,411,753	-		Pf6N2E2_1205	0.17	+0.3
1,411,753	-		Pf6N2E2_1205	0.17	+1.4
1,411,771	+		Pf6N2E2_1205	0.19	+1.7
1,411,860	-		Pf6N2E2_1205	0.29	-1.1
1,411,860	-		Pf6N2E2_1205	0.29	-0.3
1,412,091	+		Pf6N2E2_1205	0.54	+0.4
1,412,091	+		Pf6N2E2_1205	0.54	+1.7
1,412,279	-		Pf6N2E2_1205	0.75	+0.1
1,412,286	+		Pf6N2E2_1205	0.76	-0.1
1,412,347	+		Pf6N2E2_1205	0.82	+0.7
1,412,347	+		Pf6N2E2_1205	0.82	-0.5
1,412,348	-		Pf6N2E2_1205	0.82	+0.3
1,412,348	-		Pf6N2E2_1205	0.82	+1.2
1,412,574	-				-0.1
1,412,702	+				-0.4
1,412,703	-				+0.5
1,412,703	-				+0.6
1,412,703	-				-0.2
1,412,703	-				-0.2
1,412,703	-				-0.4
1,412,769	+				-1.0
1,412,931	+		Pf6N2E2_1206	0.24	+0.1
1,412,931	+		Pf6N2E2_1206	0.24	-0.7
1,412,931	+		Pf6N2E2_1206	0.24	+0.3
1,412,931	+		Pf6N2E2_1206	0.24	-0.9
1,412,932	-		Pf6N2E2_1206	0.24	+0.1
1,412,932	-		Pf6N2E2_1206	0.24	+1.6
1,413,166	-		Pf6N2E2_1206	0.55	+0.6
1,413,195	+		Pf6N2E2_1206	0.58	-0.7
1,413,195	+				+0.6
1,413,195	+		Pf6N2E2_1206	0.58	-0.0
1,413,195	+		Pf6N2E2_1206	0.58	-0.4
1,413,196	-		Pf6N2E2_1206	0.59	+0.6
1,413,196	-		Pf6N2E2_1206	0.59	+2.6
1,413,332	-		Pf6N2E2_1206	0.76	+0.9
1,413,372	-		Pf6N2E2_1206	0.82	+0.5
1,413,399	-		Pf6N2E2_1206	0.85	-0.4
1,413,496	+				+1.6
1,413,529	+				+0.5
1,413,585	+				+0.1
1,413,585	+				-1.3
1,413,585	+				+0.5
1,413,585	+				-0.4
1,413,585	+				+0.1
1,413,585	+				-1.4
1,413,586	-				-0.6
1,413,586	-				-2.1
1,413,656	+				+1.0
1,413,657	-				+0.1
1,413,824	+				+1.6
1,413,953	+		Pf6N2E2_1207	0.21	-0.2
1,413,954	-		Pf6N2E2_1207	0.21	+0.3
1,413,992	+		Pf6N2E2_1207	0.25	+0.6
1,414,169	+		Pf6N2E2_1207	0.41	-0.4