Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1114

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A
1,305,496	-		Pf6N2E2_1113	0.26	+0.2
1,305,496	-		Pf6N2E2_1113	0.26	+1.6
1,305,594	+		Pf6N2E2_1113	0.43	-0.0
1,305,688	-		Pf6N2E2_1113	0.61	+0.6
1,306,010	+				-0.4
1,306,010	+				-0.7
1,306,011	-				+0.4
1,306,080	+				-0.3
1,306,349	+				-0.5
1,306,349	+				-0.3
1,306,349	+				-0.2
1,306,350	-				+0.4
1,306,626	+				-0.9
1,306,626	+				+1.6
1,306,627	-				-0.1
1,306,651	-				+0.6
1,306,701	+				-0.2
1,306,702	-				-0.2
1,306,798	-		Pf6N2E2_1114	0.13	-1.8
1,306,878	+		Pf6N2E2_1114	0.16	-0.6
1,306,879	-		Pf6N2E2_1114	0.16	+1.6
1,306,879	-		Pf6N2E2_1114	0.16	-0.2
1,307,319	+		Pf6N2E2_1114	0.33	-0.2
1,307,320	-		Pf6N2E2_1114	0.33	+1.2
1,307,320	-		Pf6N2E2_1114	0.33	-0.3
1,307,320	-		Pf6N2E2_1114	0.33	+0.2
1,307,320	-		Pf6N2E2_1114	0.33	-0.2
1,307,320	-		Pf6N2E2_1114	0.33	+0.6
1,307,380	-		Pf6N2E2_1114	0.35	+0.5
1,307,628	+		Pf6N2E2_1114	0.45	+0.0
1,307,628	+		Pf6N2E2_1114	0.45	+1.8
1,307,628	+		Pf6N2E2_1114	0.45	+0.2
1,307,628	+		Pf6N2E2_1114	0.45	+0.6
1,307,629	-		Pf6N2E2_1114	0.45	-1.2
1,307,629	-		Pf6N2E2_1114	0.45	+0.5
1,307,631	+		Pf6N2E2_1114	0.45	+1.1
1,307,631	+		Pf6N2E2_1114	0.45	+0.7
1,307,632	-		Pf6N2E2_1114	0.45	+1.6
1,307,632	-		Pf6N2E2_1114	0.45	+0.4
1,307,649	+		Pf6N2E2_1114	0.46	+0.5
1,307,649	+		Pf6N2E2_1114	0.46	+0.8
1,307,649	+		Pf6N2E2_1114	0.46	-0.6
1,307,649	+		Pf6N2E2_1114	0.46	+0.8
1,307,649	+		Pf6N2E2_1114	0.46	+0.6
1,307,650	-		Pf6N2E2_1114	0.46	-1.2
1,307,650	-		Pf6N2E2_1114	0.46	+1.6
1,307,650	-		Pf6N2E2_1114	0.46	+1.0
1,307,650	-		Pf6N2E2_1114	0.46	+0.7
1,307,650	-		Pf6N2E2_1114	0.46	+0.4
1,307,650	-		Pf6N2E2_1114	0.46	-0.8
1,307,976	+		Pf6N2E2_1114	0.59	-1.0
1,307,976	+		Pf6N2E2_1114	0.59	+1.6
1,307,977	-		Pf6N2E2_1114	0.59	+0.1
1,307,977	-		Pf6N2E2_1114	0.59	-0.7
1,307,977	-		Pf6N2E2_1114	0.59	+0.5
1,307,977	-		Pf6N2E2_1114	0.59	-0.4
1,308,155	+		Pf6N2E2_1114	0.66	-1.0
1,308,184	-		Pf6N2E2_1114	0.67	-0.2
1,308,262	-		Pf6N2E2_1114	0.70	-0.2
1,308,270	+		Pf6N2E2_1114	0.70	-0.4
1,308,271	-		Pf6N2E2_1114	0.70	+0.4
1,308,271	-		Pf6N2E2_1114	0.70	+0.4
1,308,483	+		Pf6N2E2_1114	0.78	+0.2
1,308,684	+		Pf6N2E2_1114	0.86	+0.9
1,308,708	+		Pf6N2E2_1114	0.87	-0.3
1,308,708	+		Pf6N2E2_1114	0.87	+0.3
1,308,708	+		Pf6N2E2_1114	0.87	+1.0
1,308,709	-		Pf6N2E2_1114	0.87	-1.2
1,308,709	-		Pf6N2E2_1114	0.87	+0.1
1,308,778	-				-0.7
1,308,778	-				-0.2
1,309,058	-				+0.4
1,309,058	-				+1.4
1,309,178	+		Pf6N2E2_1115	0.37	+0.0
1,309,179	-		Pf6N2E2_1115	0.37	-0.1
1,309,179	-		Pf6N2E2_1115	0.37	+0.4
1,309,208	+		Pf6N2E2_1115	0.45	+0.5
1,309,208	+		Pf6N2E2_1115	0.45	+0.4
1,309,307	+		Pf6N2E2_1115	0.71	+0.9
1,309,308	-		Pf6N2E2_1115	0.71	-1.0
1,309,308	-		Pf6N2E2_1115	0.71	-2.3
1,309,308	-		Pf6N2E2_1115	0.71	+1.0
1,309,308	-		Pf6N2E2_1115	0.71	+1.4
1,309,542	+				+3.6
1,309,543	-				-1.0
1,309,543	-				-1.0
1,309,549	+				-0.1
1,309,550	-				+0.6
1,309,566	-				+0.2
1,309,746	-		Pf6N2E2_1116	0.40	-0.2
1,309,804	+		Pf6N2E2_1116	0.53	-1.4
1,309,805	-		Pf6N2E2_1116	0.53	+0.6
1,309,994	+				+0.6
1,309,994	+				+0.1
1,309,994	+				+0.0
1,309,995	-				-0.0
1,309,995	-				-0.9
1,309,995	-				-0.2
1,309,995	-				+1.3
1,309,995	-				+1.6
1,309,995	-				+0.8