Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27705 and BWI76_RS27710 are separated by 161 nucleotides BWI76_RS27710 and BWI76_RS27715 are separated by 24 nucleotides
BWI76_RS27705: BWI76_RS27705 - Bcr/CflA family drug resistance efflux transporter, at 5,749,879 to 5,751,045
_RS27705
BWI76_RS27710: BWI76_RS27710 - N-acetylmuramic acid 6-phosphate etherase, at 5,751,207 to 5,752,109
_RS27710
BWI76_RS27715: BWI76_RS27715 - PTS N-acetylmuramic acid transporter subunits IIBC, at 5,752,134 to 5,753,567
_RS27715
Position (kb) 5751
5752
5753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.221 kb on - strand, within BWI76_RS27705 at 5750.281 kb on + strand, within BWI76_RS27705 at 5750.357 kb on + strand, within BWI76_RS27705 at 5750.396 kb on + strand, within BWI76_RS27705 at 5750.403 kb on - strand at 5750.404 kb on - strand, within BWI76_RS27705 at 5750.521 kb on + strand, within BWI76_RS27705 at 5750.545 kb on - strand, within BWI76_RS27705 at 5750.559 kb on - strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.636 kb on + strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.644 kb on - strand, within BWI76_RS27705 at 5750.741 kb on + strand, within BWI76_RS27705 at 5751.332 kb on - strand, within BWI76_RS27710 at 5751.345 kb on - strand, within BWI76_RS27710 at 5751.574 kb on + strand, within BWI76_RS27710 at 5751.612 kb on + strand, within BWI76_RS27710 at 5751.666 kb on + strand, within BWI76_RS27710 at 5751.800 kb on + strand, within BWI76_RS27710 at 5751.802 kb on - strand, within BWI76_RS27710 at 5751.856 kb on + strand, within BWI76_RS27710 at 5751.866 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.867 kb on + strand, within BWI76_RS27710 at 5751.874 kb on - strand, within BWI76_RS27710 at 5751.875 kb on - strand, within BWI76_RS27710 at 5752.092 kb on + strand at 5752.100 kb on - strand at 5752.102 kb on + strand at 5752.105 kb on - strand at 5752.288 kb on - strand, within BWI76_RS27715 at 5752.327 kb on - strand, within BWI76_RS27715 at 5752.549 kb on - strand, within BWI76_RS27715 at 5752.632 kb on - strand, within BWI76_RS27715 at 5752.692 kb on + strand, within BWI76_RS27715 at 5752.736 kb on + strand, within BWI76_RS27715 at 5753.007 kb on - strand, within BWI76_RS27715 at 5753.018 kb on + strand, within BWI76_RS27715 at 5753.046 kb on - strand, within BWI76_RS27715 at 5753.096 kb on - strand, within BWI76_RS27715
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,750,221 - BWI76_RS27705 0.29 -0.8 5,750,221 - BWI76_RS27705 0.29 -1.2 5,750,281 + BWI76_RS27705 0.34 +0.3 5,750,357 + BWI76_RS27705 0.41 +0.2 5,750,396 + BWI76_RS27705 0.44 +0.2 5,750,403 - +0.2 5,750,404 - BWI76_RS27705 0.45 -0.9 5,750,521 + BWI76_RS27705 0.55 +1.0 5,750,545 - BWI76_RS27705 0.57 -0.6 5,750,559 - BWI76_RS27705 0.58 -0.1 5,750,636 + BWI76_RS27705 0.65 -0.5 5,750,636 + BWI76_RS27705 0.65 +0.4 5,750,636 + BWI76_RS27705 0.65 -0.3 5,750,644 - BWI76_RS27705 0.66 -0.2 5,750,644 - BWI76_RS27705 0.66 +0.7 5,750,644 - BWI76_RS27705 0.66 -1.8 5,750,741 + BWI76_RS27705 0.74 +2.0 5,751,332 - BWI76_RS27710 0.14 +0.0 5,751,345 - BWI76_RS27710 0.15 -1.1 5,751,574 + BWI76_RS27710 0.41 -1.8 5,751,612 + BWI76_RS27710 0.45 -1.5 5,751,666 + BWI76_RS27710 0.51 -2.6 5,751,800 + BWI76_RS27710 0.66 -1.3 5,751,802 - BWI76_RS27710 0.66 -2.3 5,751,856 + BWI76_RS27710 0.72 -2.4 5,751,866 + BWI76_RS27710 0.73 -1.2 5,751,867 + BWI76_RS27710 0.73 -2.9 5,751,867 + BWI76_RS27710 0.73 -3.6 5,751,867 + BWI76_RS27710 0.73 -2.1 5,751,874 - BWI76_RS27710 0.74 -4.4 5,751,875 - BWI76_RS27710 0.74 -0.8 5,752,092 + -1.4 5,752,100 - +0.4 5,752,102 + -1.9 5,752,105 - +1.1 5,752,288 - BWI76_RS27715 0.11 -1.7 5,752,327 - BWI76_RS27715 0.13 -0.2 5,752,549 - BWI76_RS27715 0.29 +1.1 5,752,632 - BWI76_RS27715 0.35 +0.5 5,752,692 + BWI76_RS27715 0.39 -0.3 5,752,736 + BWI76_RS27715 0.42 +0.2 5,753,007 - BWI76_RS27715 0.61 +0.5 5,753,018 + BWI76_RS27715 0.62 +0.7 5,753,046 - BWI76_RS27715 0.64 +1.1 5,753,096 - BWI76_RS27715 0.67 +0.2
Or see this region's nucleotide sequence