Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27110 and BWI76_RS27115 overlap by 7 nucleotides BWI76_RS27115 and BWI76_RS27120 are separated by 159 nucleotides BWI76_RS27120 and BWI76_RS27125 are separated by 254 nucleotides
BWI76_RS27110: BWI76_RS27110 - xylulose 5-phosphate 3-epimerase, at 5,625,693 to 5,626,553
_RS27110
BWI76_RS27115: BWI76_RS27115 - L-ribulose-5-phosphate 4-epimerase, at 5,626,547 to 5,627,245
_RS27115
BWI76_RS27120: BWI76_RS27120 - AraC family transcriptional regulator, at 5,627,405 to 5,628,208
_RS27120
BWI76_RS27125: BWI76_RS27125 - sugar (glycoside-Pentoside-Hexuronide) transporter, at 5,628,463 to 5,629,863
_RS27125
Position (kb) 5627
5628
5629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5626.508 kb on + strand at 5626.614 kb on + strand at 5626.614 kb on + strand at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.693 kb on + strand, within BWI76_RS27115 at 5626.775 kb on - strand, within BWI76_RS27115 at 5626.891 kb on - strand, within BWI76_RS27115 at 5626.952 kb on - strand, within BWI76_RS27115 at 5626.980 kb on - strand, within BWI76_RS27115 at 5626.994 kb on + strand, within BWI76_RS27115 at 5627.016 kb on + strand, within BWI76_RS27115 at 5627.024 kb on - strand, within BWI76_RS27115 at 5627.024 kb on - strand, within BWI76_RS27115 at 5627.042 kb on + strand, within BWI76_RS27115 at 5627.064 kb on + strand, within BWI76_RS27115 at 5627.178 kb on + strand at 5627.179 kb on - strand at 5627.281 kb on + strand at 5627.292 kb on - strand at 5627.340 kb on + strand at 5627.348 kb on - strand at 5627.378 kb on - strand at 5627.410 kb on - strand at 5627.449 kb on - strand at 5627.579 kb on - strand, within BWI76_RS27120 at 5627.596 kb on - strand, within BWI76_RS27120 at 5627.657 kb on - strand, within BWI76_RS27120 at 5627.670 kb on - strand, within BWI76_RS27120 at 5627.682 kb on - strand, within BWI76_RS27120 at 5627.704 kb on + strand, within BWI76_RS27120 at 5627.722 kb on - strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.743 kb on + strand, within BWI76_RS27120 at 5627.744 kb on + strand, within BWI76_RS27120 at 5627.761 kb on - strand, within BWI76_RS27120 at 5627.762 kb on + strand, within BWI76_RS27120 at 5627.768 kb on - strand, within BWI76_RS27120 at 5627.772 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.850 kb on + strand, within BWI76_RS27120 at 5627.876 kb on + strand, within BWI76_RS27120 at 5627.877 kb on - strand, within BWI76_RS27120 at 5627.890 kb on + strand, within BWI76_RS27120 at 5627.906 kb on - strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on - strand, within BWI76_RS27120 at 5627.931 kb on - strand at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.935 kb on + strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.989 kb on + strand at 5627.997 kb on - strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.105 kb on + strand, within BWI76_RS27120 at 5628.110 kb on + strand, within BWI76_RS27120 at 5628.111 kb on + strand, within BWI76_RS27120 at 5628.116 kb on + strand, within BWI76_RS27120 at 5628.118 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.130 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.175 kb on + strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.179 kb on + strand at 5628.183 kb on - strand at 5628.245 kb on + strand at 5628.250 kb on + strand at 5628.277 kb on - strand at 5628.277 kb on - strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.369 kb on - strand at 5628.404 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.414 kb on - strand at 5628.429 kb on + strand at 5628.435 kb on - strand at 5628.442 kb on + strand at 5628.450 kb on - strand at 5628.480 kb on - strand at 5628.490 kb on - strand at 5628.491 kb on + strand at 5628.491 kb on + strand at 5628.497 kb on - strand at 5628.499 kb on + strand at 5628.499 kb on - strand at 5628.499 kb on - strand at 5628.504 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.518 kb on + strand at 5628.539 kb on - strand at 5628.542 kb on + strand at 5628.566 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.585 kb on + strand at 5628.594 kb on - strand at 5628.613 kb on + strand, within BWI76_RS27125 at 5628.619 kb on + strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.654 kb on + strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.761 kb on - strand, within BWI76_RS27125 at 5628.784 kb on - strand, within BWI76_RS27125 at 5628.804 kb on + strand, within BWI76_RS27125 at 5628.903 kb on + strand, within BWI76_RS27125 at 5628.956 kb on + strand, within BWI76_RS27125 at 5628.964 kb on - strand, within BWI76_RS27125 at 5629.047 kb on - strand, within BWI76_RS27125 at 5629.063 kb on + strand, within BWI76_RS27125 at 5629.063 kb on + strand at 5629.068 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.156 kb on - strand, within BWI76_RS27125 at 5629.169 kb on + strand, within BWI76_RS27125
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,626,508 + +1.7 5,626,614 + -1.7 5,626,614 + -0.3 5,626,686 + BWI76_RS27115 0.20 +1.8 5,626,686 + BWI76_RS27115 0.20 +0.8 5,626,686 + BWI76_RS27115 0.20 +0.6 5,626,693 + BWI76_RS27115 0.21 +0.3 5,626,775 - BWI76_RS27115 0.33 -0.2 5,626,891 - BWI76_RS27115 0.49 +0.1 5,626,952 - BWI76_RS27115 0.58 -0.0 5,626,980 - BWI76_RS27115 0.62 +0.3 5,626,994 + BWI76_RS27115 0.64 +0.2 5,627,016 + BWI76_RS27115 0.67 +0.2 5,627,024 - BWI76_RS27115 0.68 +0.1 5,627,024 - BWI76_RS27115 0.68 -1.1 5,627,042 + BWI76_RS27115 0.71 -0.6 5,627,064 + BWI76_RS27115 0.74 +0.6 5,627,178 + -0.3 5,627,179 - -0.1 5,627,281 + -0.3 5,627,292 - +0.5 5,627,340 + +3.4 5,627,348 - +0.2 5,627,378 - -0.7 5,627,410 - +1.4 5,627,449 - +2.5 5,627,579 - BWI76_RS27120 0.22 -0.2 5,627,596 - BWI76_RS27120 0.24 -0.4 5,627,657 - BWI76_RS27120 0.31 -1.1 5,627,670 - BWI76_RS27120 0.33 +0.2 5,627,682 - BWI76_RS27120 0.34 +0.0 5,627,704 + BWI76_RS27120 0.37 -0.2 5,627,722 - BWI76_RS27120 0.39 -2.0 5,627,727 + BWI76_RS27120 0.40 -0.0 5,627,727 + BWI76_RS27120 0.40 -1.9 5,627,735 - BWI76_RS27120 0.41 +0.2 5,627,735 - BWI76_RS27120 0.41 +1.3 5,627,743 + BWI76_RS27120 0.42 -1.2 5,627,744 + BWI76_RS27120 0.42 +2.7 5,627,761 - BWI76_RS27120 0.44 -0.2 5,627,762 + BWI76_RS27120 0.44 -0.5 5,627,768 - BWI76_RS27120 0.45 +0.9 5,627,772 - BWI76_RS27120 0.46 -1.1 5,627,814 - BWI76_RS27120 0.51 -1.4 5,627,814 - BWI76_RS27120 0.51 -1.0 5,627,814 - BWI76_RS27120 0.51 +3.3 5,627,815 - BWI76_RS27120 0.51 -2.5 5,627,815 - BWI76_RS27120 0.51 -0.5 5,627,850 + BWI76_RS27120 0.55 +0.0 5,627,876 + BWI76_RS27120 0.59 -0.2 5,627,877 - BWI76_RS27120 0.59 -0.5 5,627,890 + BWI76_RS27120 0.60 -0.8 5,627,906 - BWI76_RS27120 0.62 +0.2 5,627,913 + BWI76_RS27120 0.63 -1.8 5,627,913 + +1.8 5,627,913 + BWI76_RS27120 0.63 -1.7 5,627,913 + BWI76_RS27120 0.63 -1.5 5,627,913 + BWI76_RS27120 0.63 +0.9 5,627,921 - BWI76_RS27120 0.64 -1.1 5,627,921 - BWI76_RS27120 0.64 -0.6 5,627,930 + BWI76_RS27120 0.65 -1.5 5,627,930 + BWI76_RS27120 0.65 -1.2 5,627,930 + BWI76_RS27120 0.65 +0.2 5,627,931 + BWI76_RS27120 0.65 -0.2 5,627,931 + BWI76_RS27120 0.65 -0.8 5,627,931 + BWI76_RS27120 0.65 -2.5 5,627,931 - BWI76_RS27120 0.65 -1.1 5,627,931 - +0.8 5,627,933 - BWI76_RS27120 0.66 +2.0 5,627,933 - BWI76_RS27120 0.66 -0.5 5,627,933 - BWI76_RS27120 0.66 -0.3 5,627,933 - BWI76_RS27120 0.66 +0.1 5,627,935 + BWI76_RS27120 0.66 -1.8 5,627,938 - BWI76_RS27120 0.66 -2.2 5,627,938 - BWI76_RS27120 0.66 +0.3 5,627,943 - BWI76_RS27120 0.67 +0.2 5,627,943 - BWI76_RS27120 0.67 -1.2 5,627,943 - BWI76_RS27120 0.67 -0.5 5,627,945 - BWI76_RS27120 0.67 +0.8 5,627,945 - BWI76_RS27120 0.67 -1.0 5,627,989 + -0.5 5,627,997 - BWI76_RS27120 0.74 +0.3 5,628,001 + BWI76_RS27120 0.74 -0.5 5,628,001 + BWI76_RS27120 0.74 -0.2 5,628,004 - BWI76_RS27120 0.75 -1.2 5,628,004 - BWI76_RS27120 0.75 -1.8 5,628,009 - BWI76_RS27120 0.75 -1.5 5,628,009 - BWI76_RS27120 0.75 -0.4 5,628,009 - BWI76_RS27120 0.75 +0.1 5,628,015 + BWI76_RS27120 0.76 +0.3 5,628,015 + BWI76_RS27120 0.76 -0.8 5,628,015 + BWI76_RS27120 0.76 -0.6 5,628,015 + BWI76_RS27120 0.76 +0.1 5,628,015 + BWI76_RS27120 0.76 +1.5 5,628,015 + BWI76_RS27120 0.76 -2.2 5,628,015 + BWI76_RS27120 0.76 -1.0 5,628,015 + BWI76_RS27120 0.76 -0.9 5,628,015 + BWI76_RS27120 0.76 +1.3 5,628,015 + BWI76_RS27120 0.76 -1.8 5,628,015 + BWI76_RS27120 0.76 -1.8 5,628,015 + BWI76_RS27120 0.76 -1.3 5,628,023 - BWI76_RS27120 0.77 -2.1 5,628,023 - BWI76_RS27120 0.77 -1.9 5,628,023 - BWI76_RS27120 0.77 -1.6 5,628,023 - BWI76_RS27120 0.77 -3.7 5,628,023 - BWI76_RS27120 0.77 -2.3 5,628,023 - BWI76_RS27120 0.77 -0.6 5,628,023 - BWI76_RS27120 0.77 +2.1 5,628,098 + BWI76_RS27120 0.86 -0.7 5,628,098 + BWI76_RS27120 0.86 -1.3 5,628,105 + BWI76_RS27120 0.87 -0.2 5,628,110 + BWI76_RS27120 0.88 -0.9 5,628,111 + BWI76_RS27120 0.88 +2.8 5,628,116 + BWI76_RS27120 0.88 -1.5 5,628,118 - BWI76_RS27120 0.89 -0.5 5,628,119 - BWI76_RS27120 0.89 -1.7 5,628,119 - BWI76_RS27120 0.89 -0.0 5,628,119 - BWI76_RS27120 0.89 -0.2 5,628,119 - BWI76_RS27120 0.89 -2.7 5,628,119 - BWI76_RS27120 0.89 -0.6 5,628,130 + -3.1 5,628,167 + -0.2 5,628,167 + -0.2 5,628,167 + -2.5 5,628,175 + -0.9 5,628,175 - -0.6 5,628,175 - -1.9 5,628,175 - +1.0 5,628,175 - -2.2 5,628,179 + -0.5 5,628,183 - -0.4 5,628,245 + -0.2 5,628,250 + +4.9 5,628,277 - -0.3 5,628,277 - -1.3 5,628,315 + -0.3 5,628,315 + -1.3 5,628,315 + -2.3 5,628,315 + +0.0 5,628,315 + -0.2 5,628,323 - -1.6 5,628,323 - -1.6 5,628,323 - -2.8 5,628,323 - +2.5 5,628,323 - -1.0 5,628,323 - -1.3 5,628,369 - -1.2 5,628,404 + -2.4 5,628,406 + +2.0 5,628,406 + -0.4 5,628,406 + +0.6 5,628,414 - -0.0 5,628,429 + +0.0 5,628,435 - -1.9 5,628,442 + -2.3 5,628,450 - -0.9 5,628,480 - -1.5 5,628,490 - -1.5 5,628,491 + -1.0 5,628,491 + -0.8 5,628,497 - +0.7 5,628,499 + -0.6 5,628,499 - -0.5 5,628,499 - +0.3 5,628,504 + +0.0 5,628,505 + +0.2 5,628,505 + -0.6 5,628,505 + -2.4 5,628,513 - +0.7 5,628,513 - -1.4 5,628,513 - -0.5 5,628,518 + -0.1 5,628,539 - -3.3 5,628,542 + -1.1 5,628,566 + +0.6 5,628,571 + +1.1 5,628,571 + +0.3 5,628,571 + -0.9 5,628,571 + +0.3 5,628,571 + +0.3 5,628,579 - +0.5 5,628,579 - -0.7 5,628,579 - -2.3 5,628,585 + -1.3 5,628,594 - -0.5 5,628,613 + BWI76_RS27125 0.11 -0.3 5,628,619 + BWI76_RS27125 0.11 -0.9 5,628,640 - BWI76_RS27125 0.13 -0.9 5,628,640 - BWI76_RS27125 0.13 +0.3 5,628,654 + BWI76_RS27125 0.14 +0.5 5,628,726 - BWI76_RS27125 0.19 -1.6 5,628,726 - BWI76_RS27125 0.19 -1.8 5,628,761 - BWI76_RS27125 0.21 +0.6 5,628,784 - BWI76_RS27125 0.23 +1.3 5,628,804 + BWI76_RS27125 0.24 +0.2 5,628,903 + BWI76_RS27125 0.31 +0.6 5,628,956 + BWI76_RS27125 0.35 +0.9 5,628,964 - BWI76_RS27125 0.36 -1.1 5,629,047 - BWI76_RS27125 0.42 -0.5 5,629,063 + BWI76_RS27125 0.43 -0.8 5,629,063 + +0.0 5,629,068 + BWI76_RS27125 0.43 -3.4 5,629,148 + BWI76_RS27125 0.49 -0.4 5,629,148 + BWI76_RS27125 0.49 -1.5 5,629,148 + BWI76_RS27125 0.49 -0.7 5,629,148 + BWI76_RS27125 0.49 -0.8 5,629,148 + BWI76_RS27125 0.49 +0.8 5,629,156 - BWI76_RS27125 0.49 -0.5 5,629,169 + BWI76_RS27125 0.50 -0.0
Or see this region's nucleotide sequence