Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26965 and BWI76_RS26970 are separated by 441 nucleotides BWI76_RS26970 and BWI76_RS26975 are separated by 236 nucleotides BWI76_RS26975 and BWI76_RS26980 are separated by 262 nucleotides
BWI76_RS26965: BWI76_RS26965 - hypothetical protein, at 5,593,807 to 5,594,517
_RS26965
BWI76_RS26970: BWI76_RS26970 - aromatic acid/H+ symport family MFS transporter, at 5,594,959 to 5,596,317
_RS26970
BWI76_RS26975: BWI76_RS26975 - transcriptional regulator, at 5,596,554 to 5,596,847
_RS26975
BWI76_RS26980: BWI76_RS26980 - cold-shock protein, at 5,597,110 to 5,597,322
_RS26980
Position (kb) 5594
5595
5596
5597 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5594.199 kb on + strand, within BWI76_RS26965 at 5594.199 kb on + strand, within BWI76_RS26965 at 5594.245 kb on - strand, within BWI76_RS26965 at 5594.274 kb on + strand, within BWI76_RS26965 at 5594.380 kb on - strand, within BWI76_RS26965 at 5594.572 kb on - strand at 5594.574 kb on + strand at 5594.582 kb on - strand at 5594.582 kb on - strand at 5594.582 kb on - strand at 5594.602 kb on - strand at 5594.663 kb on + strand at 5594.675 kb on + strand at 5595.095 kb on + strand, within BWI76_RS26970 at 5595.103 kb on - strand, within BWI76_RS26970 at 5595.103 kb on - strand, within BWI76_RS26970 at 5595.295 kb on - strand, within BWI76_RS26970 at 5595.295 kb on - strand, within BWI76_RS26970 at 5595.323 kb on + strand, within BWI76_RS26970 at 5595.414 kb on - strand, within BWI76_RS26970 at 5595.434 kb on + strand, within BWI76_RS26970 at 5595.618 kb on - strand, within BWI76_RS26970 at 5595.640 kb on - strand, within BWI76_RS26970 at 5595.650 kb on - strand, within BWI76_RS26970 at 5595.869 kb on + strand, within BWI76_RS26970 at 5595.869 kb on - strand, within BWI76_RS26970 at 5596.261 kb on + strand at 5596.264 kb on - strand at 5596.353 kb on - strand at 5596.358 kb on + strand at 5596.376 kb on - strand at 5596.403 kb on - strand at 5596.403 kb on - strand at 5596.508 kb on + strand at 5596.508 kb on + strand at 5596.591 kb on + strand, within BWI76_RS26975 at 5596.684 kb on + strand, within BWI76_RS26975 at 5596.692 kb on - strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.740 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.771 kb on - strand, within BWI76_RS26975 at 5596.772 kb on - strand, within BWI76_RS26975 at 5596.774 kb on + strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.788 kb on + strand, within BWI76_RS26975 at 5596.802 kb on + strand, within BWI76_RS26975 at 5596.820 kb on + strand at 5596.828 kb on - strand at 5596.953 kb on + strand at 5596.989 kb on - strand at 5597.063 kb on + strand at 5597.063 kb on + strand at 5597.071 kb on - strand at 5597.159 kb on + strand, within BWI76_RS26980 at 5597.208 kb on + strand, within BWI76_RS26980 at 5597.216 kb on - strand, within BWI76_RS26980 at 5597.218 kb on + strand, within BWI76_RS26980 at 5597.218 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,594,199 + BWI76_RS26965 0.55 +0.4 5,594,199 + BWI76_RS26965 0.55 +0.7 5,594,245 - BWI76_RS26965 0.62 +1.2 5,594,274 + BWI76_RS26965 0.66 +1.3 5,594,380 - BWI76_RS26965 0.81 +0.3 5,594,572 - -0.1 5,594,574 + +0.1 5,594,582 - +0.5 5,594,582 - -1.8 5,594,582 - +0.4 5,594,602 - +0.3 5,594,663 + -1.6 5,594,675 + -1.4 5,595,095 + BWI76_RS26970 0.10 -0.2 5,595,103 - BWI76_RS26970 0.11 -2.3 5,595,103 - BWI76_RS26970 0.11 +0.4 5,595,295 - BWI76_RS26970 0.25 -0.2 5,595,295 - BWI76_RS26970 0.25 +0.2 5,595,323 + BWI76_RS26970 0.27 -0.8 5,595,414 - BWI76_RS26970 0.33 -0.5 5,595,434 + BWI76_RS26970 0.35 -2.3 5,595,618 - BWI76_RS26970 0.48 -0.6 5,595,640 - BWI76_RS26970 0.50 -0.2 5,595,650 - BWI76_RS26970 0.51 +0.2 5,595,869 + BWI76_RS26970 0.67 +0.1 5,595,869 - BWI76_RS26970 0.67 -1.3 5,596,261 + +1.0 5,596,264 - -0.1 5,596,353 - +1.1 5,596,358 + +0.3 5,596,376 - +0.1 5,596,403 - +1.7 5,596,403 - +0.7 5,596,508 + -1.1 5,596,508 + -0.1 5,596,591 + BWI76_RS26975 0.13 +0.3 5,596,684 + BWI76_RS26975 0.44 +2.8 5,596,692 - BWI76_RS26975 0.47 -0.3 5,596,729 + BWI76_RS26975 0.60 +0.4 5,596,729 + BWI76_RS26975 0.60 +1.3 5,596,729 + BWI76_RS26975 0.60 +0.9 5,596,740 - BWI76_RS26975 0.63 +3.0 5,596,748 - BWI76_RS26975 0.66 -1.0 5,596,748 - BWI76_RS26975 0.66 -1.9 5,596,763 + BWI76_RS26975 0.71 +1.4 5,596,763 + BWI76_RS26975 0.71 +0.4 5,596,771 - BWI76_RS26975 0.74 +1.1 5,596,772 - BWI76_RS26975 0.74 +1.1 5,596,774 + BWI76_RS26975 0.75 +1.3 5,596,782 - BWI76_RS26975 0.78 -0.1 5,596,782 - BWI76_RS26975 0.78 +0.2 5,596,782 - BWI76_RS26975 0.78 +1.9 5,596,784 + BWI76_RS26975 0.78 +1.1 5,596,784 + BWI76_RS26975 0.78 -1.5 5,596,788 + BWI76_RS26975 0.80 +1.1 5,596,802 + BWI76_RS26975 0.84 +0.5 5,596,820 + +0.7 5,596,828 - +0.1 5,596,953 + -0.0 5,596,989 - -0.0 5,597,063 + -1.7 5,597,063 + +1.1 5,597,071 - +1.2 5,597,159 + BWI76_RS26980 0.23 +1.9 5,597,208 + BWI76_RS26980 0.46 +0.6 5,597,216 - BWI76_RS26980 0.50 +0.3 5,597,218 + BWI76_RS26980 0.51 +1.2 5,597,218 + +0.8
Or see this region's nucleotide sequence