Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26225 and BWI76_RS26230 overlap by 4 nucleotides BWI76_RS26230 and BWI76_RS26235 are separated by 144 nucleotides
BWI76_RS26225: BWI76_RS26225 - DNA processing protein DprA, at 5,428,136 to 5,429,341
_RS26225
BWI76_RS26230: BWI76_RS26230 - ATP-dependent DNA helicase, at 5,429,338 to 5,431,437
_RS26230
BWI76_RS26235: BWI76_RS26235 - gluconate transporter, at 5,431,582 to 5,432,922
_RS26235
Position (kb) 5429
5430
5431
5432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5428.388 kb on + strand, within BWI76_RS26225 at 5428.407 kb on + strand, within BWI76_RS26225 at 5428.530 kb on - strand, within BWI76_RS26225 at 5428.569 kb on - strand, within BWI76_RS26225 at 5428.714 kb on - strand, within BWI76_RS26225 at 5428.822 kb on + strand, within BWI76_RS26225 at 5428.822 kb on + strand, within BWI76_RS26225 at 5428.944 kb on - strand, within BWI76_RS26225 at 5429.056 kb on + strand, within BWI76_RS26225 at 5429.056 kb on + strand, within BWI76_RS26225 at 5429.062 kb on + strand, within BWI76_RS26225 at 5429.098 kb on + strand, within BWI76_RS26225 at 5429.179 kb on + strand, within BWI76_RS26225 at 5429.276 kb on + strand at 5429.284 kb on - strand at 5429.479 kb on - strand at 5429.644 kb on - strand, within BWI76_RS26230 at 5430.001 kb on - strand, within BWI76_RS26230 at 5430.017 kb on + strand, within BWI76_RS26230 at 5430.031 kb on - strand, within BWI76_RS26230 at 5430.063 kb on + strand, within BWI76_RS26230 at 5430.071 kb on + strand, within BWI76_RS26230 at 5430.071 kb on + strand, within BWI76_RS26230 at 5430.079 kb on - strand, within BWI76_RS26230 at 5430.079 kb on - strand, within BWI76_RS26230 at 5430.159 kb on - strand, within BWI76_RS26230 at 5430.247 kb on + strand, within BWI76_RS26230 at 5430.249 kb on + strand, within BWI76_RS26230 at 5430.255 kb on - strand, within BWI76_RS26230 at 5430.287 kb on - strand, within BWI76_RS26230 at 5430.315 kb on + strand, within BWI76_RS26230 at 5430.460 kb on - strand, within BWI76_RS26230 at 5430.542 kb on + strand, within BWI76_RS26230 at 5430.551 kb on - strand, within BWI76_RS26230 at 5430.551 kb on - strand, within BWI76_RS26230 at 5430.559 kb on - strand, within BWI76_RS26230 at 5430.606 kb on + strand, within BWI76_RS26230 at 5430.610 kb on + strand, within BWI76_RS26230 at 5430.614 kb on - strand, within BWI76_RS26230 at 5430.693 kb on + strand, within BWI76_RS26230 at 5430.700 kb on + strand, within BWI76_RS26230 at 5430.887 kb on + strand, within BWI76_RS26230 at 5430.892 kb on + strand, within BWI76_RS26230 at 5430.988 kb on + strand, within BWI76_RS26230 at 5431.126 kb on - strand, within BWI76_RS26230 at 5431.368 kb on - strand at 5431.411 kb on + strand at 5431.411 kb on + strand at 5431.482 kb on + strand at 5431.576 kb on - strand at 5431.579 kb on + strand at 5431.587 kb on - strand at 5431.860 kb on + strand, within BWI76_RS26235 at 5431.911 kb on + strand, within BWI76_RS26235 at 5432.091 kb on - strand, within BWI76_RS26235 at 5432.294 kb on + strand, within BWI76_RS26235
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,428,388 + BWI76_RS26225 0.21 +0.8 5,428,407 + BWI76_RS26225 0.22 -1.1 5,428,530 - BWI76_RS26225 0.33 +0.5 5,428,569 - BWI76_RS26225 0.36 -0.7 5,428,714 - BWI76_RS26225 0.48 -1.4 5,428,822 + BWI76_RS26225 0.57 +1.6 5,428,822 + BWI76_RS26225 0.57 -2.2 5,428,944 - BWI76_RS26225 0.67 -1.2 5,429,056 + BWI76_RS26225 0.76 +0.9 5,429,056 + BWI76_RS26225 0.76 +0.7 5,429,062 + BWI76_RS26225 0.77 +1.4 5,429,098 + BWI76_RS26225 0.80 -0.4 5,429,179 + BWI76_RS26225 0.86 -1.7 5,429,276 + +2.9 5,429,284 - +1.4 5,429,479 - +0.3 5,429,644 - BWI76_RS26230 0.15 +0.1 5,430,001 - BWI76_RS26230 0.32 +0.7 5,430,017 + BWI76_RS26230 0.32 -0.7 5,430,031 - BWI76_RS26230 0.33 +0.2 5,430,063 + BWI76_RS26230 0.35 +0.2 5,430,071 + BWI76_RS26230 0.35 -0.6 5,430,071 + BWI76_RS26230 0.35 +0.3 5,430,079 - BWI76_RS26230 0.35 +2.9 5,430,079 - BWI76_RS26230 0.35 -1.0 5,430,159 - BWI76_RS26230 0.39 +0.1 5,430,247 + BWI76_RS26230 0.43 +0.0 5,430,249 + BWI76_RS26230 0.43 +0.4 5,430,255 - BWI76_RS26230 0.44 +0.8 5,430,287 - BWI76_RS26230 0.45 -2.1 5,430,315 + BWI76_RS26230 0.47 +0.6 5,430,460 - BWI76_RS26230 0.53 -0.6 5,430,542 + BWI76_RS26230 0.57 -0.4 5,430,551 - BWI76_RS26230 0.58 +0.7 5,430,551 - BWI76_RS26230 0.58 -0.1 5,430,559 - BWI76_RS26230 0.58 +1.8 5,430,606 + BWI76_RS26230 0.60 -0.9 5,430,610 + BWI76_RS26230 0.61 +0.2 5,430,614 - BWI76_RS26230 0.61 -0.7 5,430,693 + BWI76_RS26230 0.65 -0.0 5,430,700 + BWI76_RS26230 0.65 -0.3 5,430,887 + BWI76_RS26230 0.74 +0.4 5,430,892 + BWI76_RS26230 0.74 -0.5 5,430,988 + BWI76_RS26230 0.79 +0.0 5,431,126 - BWI76_RS26230 0.85 -1.9 5,431,368 - +0.3 5,431,411 + -0.1 5,431,411 + -0.5 5,431,482 + +0.5 5,431,576 - -0.2 5,431,579 + -0.3 5,431,587 - +1.0 5,431,860 + BWI76_RS26235 0.21 -0.1 5,431,911 + BWI76_RS26235 0.25 -0.4 5,432,091 - BWI76_RS26235 0.38 +0.7 5,432,294 + BWI76_RS26235 0.53 +0.8
Or see this region's nucleotide sequence