Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26080 and BWI76_RS26085 are separated by 84 nucleotides BWI76_RS26085 and BWI76_RS26090 are separated by 54 nucleotides BWI76_RS26090 and BWI76_RS26095 are separated by 19 nucleotides BWI76_RS26095 and BWI76_RS26100 are separated by 10 nucleotides
BWI76_RS26080: BWI76_RS26080 - cell division protein DamX, at 5,388,780 to 5,390,093
_RS26080
BWI76_RS26085: BWI76_RS26085 - 3-dehydroquinate synthase, at 5,390,178 to 5,391,272
_RS26085
BWI76_RS26090: BWI76_RS26090 - shikimate kinase, at 5,391,327 to 5,391,848
_RS26090
BWI76_RS26095: BWI76_RS26095 - shikimate kinase, at 5,391,868 to 5,392,106
_RS26095
BWI76_RS26100: BWI76_RS26100 - DNA transporter HofQ, at 5,392,117 to 5,393,358
_RS26100
Position (kb) 5390
5391
5392 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5389.503 kb on + strand, within BWI76_RS26080 at 5389.535 kb on - strand, within BWI76_RS26080 at 5389.670 kb on + strand, within BWI76_RS26080 at 5389.675 kb on + strand, within BWI76_RS26080 at 5390.224 kb on - strand at 5390.276 kb on - strand at 5390.276 kb on - strand at 5390.737 kb on - strand, within BWI76_RS26085 at 5391.051 kb on - strand, within BWI76_RS26085 at 5391.138 kb on - strand, within BWI76_RS26085 at 5391.913 kb on - strand, within BWI76_RS26095 at 5391.929 kb on - strand, within BWI76_RS26095 at 5392.235 kb on - strand at 5392.260 kb on + strand, within BWI76_RS26100
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,389,503 + BWI76_RS26080 0.55 -2.2 5,389,535 - BWI76_RS26080 0.57 +1.1 5,389,670 + BWI76_RS26080 0.68 -1.8 5,389,675 + BWI76_RS26080 0.68 -1.3 5,390,224 - -2.8 5,390,276 - -1.2 5,390,276 - -3.4 5,390,737 - BWI76_RS26085 0.51 -0.7 5,391,051 - BWI76_RS26085 0.80 -0.6 5,391,138 - BWI76_RS26085 0.88 -1.8 5,391,913 - BWI76_RS26095 0.19 +0.2 5,391,929 - BWI76_RS26095 0.26 -2.3 5,392,235 - -0.3 5,392,260 + BWI76_RS26100 0.12 +0.5
Or see this region's nucleotide sequence