Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24735

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS24730 and BWI76_RS24735 are separated by 482 nucleotidesBWI76_RS24735 and BWI76_RS24740 are separated by 127 nucleotides BWI76_RS24730: BWI76_RS24730 - uronate isomerase, at 5,157,505 to 5,158,917 _RS24730 BWI76_RS24735: BWI76_RS24735 - MFS transporter, at 5,159,400 to 5,160,701 _RS24735 BWI76_RS24740: BWI76_RS24740 - GntR family transcriptional regulator, at 5,160,829 to 5,161,605 _RS24740 Position (kb) 5159 5160 5161Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5158.939 kb on + strandat 5159.208 kb on + strandat 5159.314 kb on - strandat 5159.474 kb on + strandat 5159.482 kb on - strandat 5159.566 kb on - strand, within BWI76_RS24735at 5159.575 kb on + strand, within BWI76_RS24735at 5159.585 kb on + strand, within BWI76_RS24735at 5159.663 kb on - strand, within BWI76_RS24735at 5160.168 kb on + strand, within BWI76_RS24735at 5160.175 kb on + strand, within BWI76_RS24735at 5160.183 kb on - strand, within BWI76_RS24735at 5160.251 kb on - strand, within BWI76_RS24735at 5160.285 kb on - strand, within BWI76_RS24735at 5160.291 kb on - strand, within BWI76_RS24735at 5160.291 kb on - strand, within BWI76_RS24735at 5160.350 kb on - strand, within BWI76_RS24735at 5160.387 kb on + strand, within BWI76_RS24735at 5160.659 kb on + strandat 5160.944 kb on - strand, within BWI76_RS24740at 5161.454 kb on + strand, within BWI76_RS24740at 5161.472 kb on - strand, within BWI76_RS24740at 5161.621 kb on - strandat 5161.652 kb on - strandat 5161.678 kb on + strandat 5161.688 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
remove
5,158,939 + -3.3
5,159,208 + -0.5
5,159,314 - +0.2
5,159,474 + -0.1
5,159,482 - +0.6
5,159,566 - BWI76_RS24735 0.13 +0.4
5,159,575 + BWI76_RS24735 0.13 +0.5
5,159,585 + BWI76_RS24735 0.14 -0.4
5,159,663 - BWI76_RS24735 0.20 +0.5
5,160,168 + BWI76_RS24735 0.59 -0.2
5,160,175 + BWI76_RS24735 0.60 -0.6
5,160,183 - BWI76_RS24735 0.60 +0.7
5,160,251 - BWI76_RS24735 0.65 -1.5
5,160,285 - BWI76_RS24735 0.68 +0.4
5,160,291 - BWI76_RS24735 0.68 -2.4
5,160,291 - BWI76_RS24735 0.68 -0.2
5,160,350 - BWI76_RS24735 0.73 +0.8
5,160,387 + BWI76_RS24735 0.76 +0.8
5,160,659 + -0.5
5,160,944 - BWI76_RS24740 0.15 -3.0
5,161,454 + BWI76_RS24740 0.80 -5.9
5,161,472 - BWI76_RS24740 0.83 -2.6
5,161,621 - -0.5
5,161,652 - -2.2
5,161,678 + +0.9
5,161,688 + -0.1

Or see this region's nucleotide sequence