Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24425

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
5,090,765	-				-1.3
5,090,838	+				-0.6
5,090,838	+				-0.8
5,090,838	+				+0.6
5,090,970	+				-0.8
5,091,004	-				+0.2
5,091,004	-				-0.7
5,091,014	-				+3.0
5,091,053	-		BWI76_RS24420	0.15	+0.4
5,091,087	+		BWI76_RS24420	0.21	+2.0
5,091,087	+		BWI76_RS24420	0.21	+3.0
5,091,092	+		BWI76_RS24420	0.22	-2.8
5,091,142	+				+3.0
5,091,193	+		BWI76_RS24420	0.40	+3.0
5,091,206	+		BWI76_RS24420	0.42	+0.6
5,091,216	+		BWI76_RS24420	0.44	-1.5
5,091,216	+		BWI76_RS24420	0.44	-0.4
5,091,216	+		BWI76_RS24420	0.44	+2.0
5,091,216	+		BWI76_RS24420	0.44	+0.4
5,091,216	+		BWI76_RS24420	0.44	-3.2
5,091,219	-		BWI76_RS24420	0.44	-1.1
5,091,219	-		BWI76_RS24420	0.44	-0.2
5,091,224	-		BWI76_RS24420	0.45	+2.0
5,091,224	-				-1.4
5,091,224	-				+1.4
5,091,224	-		BWI76_RS24420	0.45	-0.2
5,091,224	-		BWI76_RS24420	0.45	+1.0
5,091,224	-		BWI76_RS24420	0.45	+1.0
5,091,268	+		BWI76_RS24420	0.53	-1.1
5,091,278	+		BWI76_RS24420	0.55	-0.8
5,091,284	+		BWI76_RS24420	0.56	-0.9
5,091,284	+		BWI76_RS24420	0.56	-0.9
5,091,286	-		BWI76_RS24420	0.56	+1.4
5,091,299	+		BWI76_RS24420	0.58	+0.8
5,091,299	+		BWI76_RS24420	0.58	-2.2
5,091,302	-		BWI76_RS24420	0.59	-0.2
5,091,304	+		BWI76_RS24420	0.59	+2.0
5,091,304	+		BWI76_RS24420	0.59	+0.5
5,091,312	+		BWI76_RS24420	0.61	-0.6
5,091,320	-		BWI76_RS24420	0.62	+3.0
5,091,344	+		BWI76_RS24420	0.66	-1.1
5,091,350	+		BWI76_RS24420	0.67	-0.8
5,091,352	-		BWI76_RS24420	0.68	-0.8
5,091,366	+		BWI76_RS24420	0.70	-2.5
5,091,376	+		BWI76_RS24420	0.72	-0.4
5,091,376	+		BWI76_RS24420	0.72	-2.4
5,091,376	+		BWI76_RS24420	0.72	-0.6
5,091,376	+		BWI76_RS24420	0.72	-1.4
5,091,376	+		BWI76_RS24420	0.72	-0.5
5,091,376	+		BWI76_RS24420	0.72	-0.8
5,091,377	-		BWI76_RS24420	0.72	+1.0
5,091,384	-		BWI76_RS24420	0.73	+0.6
5,091,384	-		BWI76_RS24420	0.73	+1.6
5,091,384	-		BWI76_RS24420	0.73	-2.0
5,091,386	+		BWI76_RS24420	0.73	+1.6
5,091,386	+		BWI76_RS24420	0.73	+10.3
5,091,386	+		BWI76_RS24420	0.73	-0.7
5,091,386	+		BWI76_RS24420	0.73	+2.5
5,091,386	+		BWI76_RS24420	0.73	+0.0
5,091,386	+		BWI76_RS24420	0.73	-2.0
5,091,386	+		BWI76_RS24420	0.73	-0.2
5,091,386	+		BWI76_RS24420	0.73	+0.2
5,091,386	+		BWI76_RS24420	0.73	+0.7
5,091,386	+		BWI76_RS24420	0.73	-1.5
5,091,386	+		BWI76_RS24420	0.73	+1.2
5,091,386	+		BWI76_RS24420	0.73	-2.1
5,091,391	+		BWI76_RS24420	0.74	+0.1
5,091,391	+		BWI76_RS24420	0.74	+1.6
5,091,391	+		BWI76_RS24420	0.74	+0.9
5,091,391	+		BWI76_RS24420	0.74	+0.8
5,091,391	+				+3.0
5,091,394	-		BWI76_RS24420	0.75	+0.4
5,091,394	-		BWI76_RS24420	0.75	-1.2
5,091,394	-		BWI76_RS24420	0.75	+1.4
5,091,396	+		BWI76_RS24420	0.75	-2.2
5,091,399	-		BWI76_RS24420	0.76	+0.4
5,091,399	-		BWI76_RS24420	0.76	-0.2
5,091,399	-		BWI76_RS24420	0.76	+2.0
5,091,399	-		BWI76_RS24420	0.76	+1.4
5,091,401	+		BWI76_RS24420	0.76	-0.8
5,091,401	+		BWI76_RS24420	0.76	-2.3
5,091,401	+		BWI76_RS24420	0.76	-0.9
5,091,401	+		BWI76_RS24420	0.76	-2.3
5,091,401	+		BWI76_RS24420	0.76	-0.0
5,091,414	-		BWI76_RS24420	0.78	-1.3
5,091,416	+		BWI76_RS24420	0.79	-0.3
5,091,424	-		BWI76_RS24420	0.80	-0.4
5,091,424	-		BWI76_RS24420	0.80	+1.6
5,091,437	-		BWI76_RS24420	0.82	-0.2
5,091,458	+		BWI76_RS24420	0.86	+0.3
5,091,458	+		BWI76_RS24420	0.86	+2.2
5,091,458	-		BWI76_RS24420	0.86	+3.0
5,091,460	+		BWI76_RS24420	0.86	-3.3
5,091,460	+		BWI76_RS24420	0.86	+1.0
5,091,460	+		BWI76_RS24420	0.86	-0.9
5,091,460	+		BWI76_RS24420	0.86	+1.9
5,091,460	+		BWI76_RS24420	0.86	-1.6
5,091,460	+		BWI76_RS24420	0.86	-1.8
5,091,460	+		BWI76_RS24420	0.86	+0.9
5,091,460	+		BWI76_RS24420	0.86	+0.2
5,091,460	+		BWI76_RS24420	0.86	-0.6
5,091,460	+		BWI76_RS24420	0.86	+0.3
5,091,462	+		BWI76_RS24420	0.87	+0.0
5,091,491	+				+0.2
5,091,501	-				-1.3
5,091,506	-				-0.4
5,091,508	+				-1.1
5,091,510	+				+1.0
5,091,510	+				+1.0
5,091,514	+				+1.1
5,091,518	-				+1.0
5,091,519	+				-3.3
5,091,564	+				-0.2
5,091,564	+				+0.0
5,091,564	+				+0.8
5,091,564	+				+1.0
5,091,564	+				+0.4
5,091,581	-				-0.8
5,091,589	-				-1.2
5,091,644	-				-0.2
5,091,668	-				-0.1
5,091,807	+				+1.0
5,091,808	+				+1.0
5,091,820	+				+0.9
5,091,821	-				-2.0
5,091,832	-				-0.9
5,091,911	+		BWI76_RS24425	0.11	-1.4
5,091,911	+		BWI76_RS24425	0.11	+3.0
5,091,918	+		BWI76_RS24425	0.12	+0.5
5,091,918	+		BWI76_RS24425	0.12	-2.6
5,091,929	+		BWI76_RS24425	0.12	-1.1
5,091,929	+		BWI76_RS24425	0.12	+0.4
5,091,929	+		BWI76_RS24425	0.12	+1.4
5,091,937	-		BWI76_RS24425	0.12	-2.3
5,091,937	-		BWI76_RS24425	0.12	-1.9
5,091,965	+		BWI76_RS24425	0.13	-1.1
5,091,965	+		BWI76_RS24425	0.13	-0.5
5,091,973	-		BWI76_RS24425	0.14	-3.4
5,091,977	+		BWI76_RS24425	0.14	-3.6
5,091,977	+		BWI76_RS24425	0.14	-1.1
5,091,977	+		BWI76_RS24425	0.14	+1.5
5,091,984	+		BWI76_RS24425	0.14	-0.9
5,092,007	-		BWI76_RS24425	0.15	-0.5
5,092,017	-		BWI76_RS24425	0.16	-4.2
5,092,017	-		BWI76_RS24425	0.16	-2.9
5,092,022	+		BWI76_RS24425	0.16	-0.2
5,092,022	+		BWI76_RS24425	0.16	-2.4
5,092,022	+		BWI76_RS24425	0.16	-1.6
5,092,030	-		BWI76_RS24425	0.16	+0.1
5,092,030	-		BWI76_RS24425	0.16	-3.1
5,092,030	-		BWI76_RS24425	0.16	+0.2
5,092,030	-		BWI76_RS24425	0.16	-0.2
5,092,030	-		BWI76_RS24425	0.16	+0.7
5,092,039	+		BWI76_RS24425	0.16	+0.5
5,092,044	+		BWI76_RS24425	0.17	+1.2
5,092,047	-		BWI76_RS24425	0.17	+1.4
5,092,059	-		BWI76_RS24425	0.17	-0.3
5,092,060	+		BWI76_RS24425	0.17	-2.5
5,092,065	+		BWI76_RS24425	0.17	-0.2
5,092,065	+		BWI76_RS24425	0.17	+0.0
5,092,065	+		BWI76_RS24425	0.17	-3.5
5,092,067	+		BWI76_RS24425	0.17	-0.7
5,092,067	+		BWI76_RS24425	0.17	+0.2
5,092,068	-		BWI76_RS24425	0.18	+2.0
5,092,075	-		BWI76_RS24425	0.18	+0.3
5,092,075	-				+1.4
5,092,075	-		BWI76_RS24425	0.18	-2.7
5,092,086	-		BWI76_RS24425	0.18	-0.1
5,092,086	-		BWI76_RS24425	0.18	-0.0
5,092,087	+		BWI76_RS24425	0.18	-2.3
5,092,091	-		BWI76_RS24425	0.18	-1.6
5,092,125	+		BWI76_RS24425	0.20	+0.4
5,092,125	+		BWI76_RS24425	0.20	+0.6
5,092,125	+		BWI76_RS24425	0.20	-0.1
5,092,125	+		BWI76_RS24425	0.20	-0.1
5,092,167	+		BWI76_RS24425	0.21	-1.4
5,092,167	+		BWI76_RS24425	0.21	-1.4
5,092,186	+		BWI76_RS24425	0.22	+0.2
5,092,194	-		BWI76_RS24425	0.22	+1.4
5,092,194	-		BWI76_RS24425	0.22	-1.4
5,092,237	+		BWI76_RS24425	0.24	-2.2
5,092,276	-		BWI76_RS24425	0.26	+0.7
5,092,320	+		BWI76_RS24425	0.27	-1.5
5,092,344	+		BWI76_RS24425	0.28	-0.5
5,092,352	-		BWI76_RS24425	0.29	-1.4
5,092,362	-		BWI76_RS24425	0.29	+0.2
5,092,466	+		BWI76_RS24425	0.33	+3.0
5,092,466	+		BWI76_RS24425	0.33	-1.0
5,092,474	-		BWI76_RS24425	0.34	-0.0
5,092,524	+		BWI76_RS24425	0.36	-0.8
5,092,681	-		BWI76_RS24425	0.42	+1.9
5,092,698	-		BWI76_RS24425	0.42	-0.0
5,092,736	+		BWI76_RS24425	0.44	+0.8
5,092,737	+		BWI76_RS24425	0.44	+1.0
5,092,744	-		BWI76_RS24425	0.44	-0.9
5,092,776	+		BWI76_RS24425	0.46	-1.0
5,092,776	+		BWI76_RS24425	0.46	-1.5
5,092,784	-		BWI76_RS24425	0.46	+0.8
5,092,784	-		BWI76_RS24425	0.46	-0.3
5,092,791	+		BWI76_RS24425	0.46	+1.5
5,092,862	-		BWI76_RS24425	0.49	+0.2
5,092,880	+		BWI76_RS24425	0.50	+0.2
5,092,888	-		BWI76_RS24425	0.50	+0.2
5,092,888	-		BWI76_RS24425	0.50	+3.0
5,092,888	-		BWI76_RS24425	0.50	-2.6
5,092,900	+		BWI76_RS24425	0.50	+1.0
5,092,910	+		BWI76_RS24425	0.51	-2.2
5,092,910	+		BWI76_RS24425	0.51	+3.0
5,092,910	+		BWI76_RS24425	0.51	-0.2
5,092,918	-		BWI76_RS24425	0.51	-0.8
5,092,918	-		BWI76_RS24425	0.51	-0.2
5,092,918	-		BWI76_RS24425	0.51	+0.4
5,092,949	+		BWI76_RS24425	0.52	-1.3
5,092,950	+		BWI76_RS24425	0.52	-1.0
5,092,965	-		BWI76_RS24425	0.53	-3.3
5,092,970	+		BWI76_RS24425	0.53	-1.5
5,092,978	-		BWI76_RS24425	0.53	-0.6
5,092,991	+		BWI76_RS24425	0.54	-1.5
5,092,991	+		BWI76_RS24425	0.54	-0.0
5,092,991	+		BWI76_RS24425	0.54	+3.0
5,092,991	+				-0.6
5,092,991	+		BWI76_RS24425	0.54	+3.0
5,092,999	-		BWI76_RS24425	0.54	-1.1
5,092,999	-		BWI76_RS24425	0.54	-0.3
5,092,999	-		BWI76_RS24425	0.54	-1.4
5,093,018	+		BWI76_RS24425	0.55	-0.3
5,093,103	-		BWI76_RS24425	0.58	+0.4
5,093,138	+		BWI76_RS24425	0.60	-3.0
5,093,141	-		BWI76_RS24425	0.60	+3.0
5,093,141	-		BWI76_RS24425	0.60	-1.1
5,093,158	-		BWI76_RS24425	0.61	-0.2
5,093,172	-		BWI76_RS24425	0.61	+0.2
5,093,172	-		BWI76_RS24425	0.61	+0.6
5,093,174	+		BWI76_RS24425	0.61	-1.2
5,093,176	+		BWI76_RS24425	0.61	+1.4
5,093,179	-		BWI76_RS24425	0.61	-0.0
5,093,181	-		BWI76_RS24425	0.62	-1.4
5,093,181	-		BWI76_RS24425	0.62	-0.8
5,093,191	-		BWI76_RS24425	0.62	-1.4
5,093,198	-		BWI76_RS24425	0.62	-2.1
5,093,233	+		BWI76_RS24425	0.64	+3.0
5,093,289	+				+1.4
5,093,290	+		BWI76_RS24425	0.66	+3.0
5,093,290	+		BWI76_RS24425	0.66	-2.0
5,093,300	+		BWI76_RS24425	0.66	-1.4
5,093,312	-				+3.0
5,093,366	+		BWI76_RS24425	0.69	+0.2
5,093,374	-		BWI76_RS24425	0.69	+0.2
5,093,382	-		BWI76_RS24425	0.69	-0.8
5,093,384	+		BWI76_RS24425	0.70	+0.4
5,093,400	-		BWI76_RS24425	0.70	+0.6
5,093,408	+		BWI76_RS24425	0.71	-0.1
5,093,408	+		BWI76_RS24425	0.71	-2.1
5,093,408	-		BWI76_RS24425	0.71	-1.9
5,093,420	+		BWI76_RS24425	0.71	+0.4
5,093,420	+		BWI76_RS24425	0.71	+0.0
5,093,420	+		BWI76_RS24425	0.71	-0.4
5,093,422	+		BWI76_RS24425	0.71	+0.3
5,093,428	+		BWI76_RS24425	0.71	+0.6
5,093,428	+		BWI76_RS24425	0.71	-0.5
5,093,428	-		BWI76_RS24425	0.71	-0.2
5,093,428	-		BWI76_RS24425	0.71	-0.6
5,093,456	+		BWI76_RS24425	0.72	-0.2
5,093,487	+		BWI76_RS24425	0.74	-1.6
5,093,490	+		BWI76_RS24425	0.74	-1.5
5,093,490	-		BWI76_RS24425	0.74	-1.6
5,093,495	-				+2.0
5,093,519	+		BWI76_RS24425	0.75	-1.0
5,093,529	+		BWI76_RS24425	0.75	+0.2
5,093,537	-		BWI76_RS24425	0.76	-1.4
5,093,537	-		BWI76_RS24425	0.76	-0.1
5,093,539	+		BWI76_RS24425	0.76	+1.1
5,093,539	+		BWI76_RS24425	0.76	-0.4
5,093,539	+		BWI76_RS24425	0.76	-1.9
5,093,539	+		BWI76_RS24425	0.76	-2.8
5,093,539	+		BWI76_RS24425	0.76	-2.4
5,093,539	+		BWI76_RS24425	0.76	-1.4
5,093,547	-		BWI76_RS24425	0.76	+0.4
5,093,547	-		BWI76_RS24425	0.76	-0.6
5,093,547	-		BWI76_RS24425	0.76	-0.6
5,093,547	-		BWI76_RS24425	0.76	-0.7
5,093,547	-		BWI76_RS24425	0.76	-0.2
5,093,547	-		BWI76_RS24425	0.76	-1.4
5,093,547	-		BWI76_RS24425	0.76	-2.0
5,093,547	-		BWI76_RS24425	0.76	-2.0
5,093,547	-		BWI76_RS24425	0.76	+0.4
5,093,547	-		BWI76_RS24425	0.76	-1.9
5,093,549	+		BWI76_RS24425	0.76	-1.5
5,093,557	+		BWI76_RS24425	0.76	-1.9
5,093,557	+		BWI76_RS24425	0.76	-1.4
5,093,557	+		BWI76_RS24425	0.76	-1.8
5,093,557	-		BWI76_RS24425	0.76	-0.9
5,093,557	-		BWI76_RS24425	0.76	-0.9
5,093,557	-		BWI76_RS24425	0.76	-1.0
5,093,569	+		BWI76_RS24425	0.77	-0.4
5,093,574	+		BWI76_RS24425	0.77	-0.1
5,093,577	-		BWI76_RS24425	0.77	+1.4
5,093,577	-		BWI76_RS24425	0.77	+0.3
5,093,577	-		BWI76_RS24425	0.77	-0.2
5,093,583	+		BWI76_RS24425	0.77	-0.7
5,093,591	+		BWI76_RS24425	0.78	+0.4
5,093,591	+		BWI76_RS24425	0.78	-0.6
5,093,591	+		BWI76_RS24425	0.78	-0.2
5,093,591	+		BWI76_RS24425	0.78	+3.0
5,093,591	+		BWI76_RS24425	0.78	-0.8
5,093,591	+		BWI76_RS24425	0.78	-2.2
5,093,591	+		BWI76_RS24425	0.78	+0.4
5,093,591	+		BWI76_RS24425	0.78	-0.6
5,093,599	-		BWI76_RS24425	0.78	-0.2
5,093,599	-		BWI76_RS24425	0.78	-0.0
5,093,599	-		BWI76_RS24425	0.78	-0.8
5,093,602	+		BWI76_RS24425	0.78	-1.9
5,093,602	+		BWI76_RS24425	0.78	-2.9
5,093,602	+		BWI76_RS24425	0.78	-0.5
5,093,610	-		BWI76_RS24425	0.78	-0.9
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5,093,624	-		BWI76_RS24425	0.79	+0.1
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5,093,783	-				+2.7
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5,093,783	-		BWI76_RS24425	0.85	-1.3
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5,093,814	+				+1.6
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5,093,815	+		BWI76_RS24425	0.87	+1.1
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5,093,822	-		BWI76_RS24425	0.87	-1.3
5,093,840	+		BWI76_RS24425	0.88	-3.1
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5,093,855	+		BWI76_RS24425	0.88	-1.1
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5,093,881	+		BWI76_RS24425	0.89	-1.3
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5,093,896	+		BWI76_RS24425	0.90	+1.3
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5,093,904	-				-0.2
5,093,904	-				-4.3
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5,093,935	+				+1.2
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5,094,024	+				-2.1
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5,094,024	+				-2.9
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5,094,032	-				+2.0
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5,094,032	-				-0.4
5,094,032	-				-1.2
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5,094,083	+				+1.4
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5,094,083	+				-0.6
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5,094,084	-				-2.2
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5,094,091	-				-3.2
5,094,091	-				+1.3
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5,094,102	+				+0.2
5,094,102	+				-1.3
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5,094,102	+				+0.7
5,094,102	+				-0.2
5,094,102	+				-2.1
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5,094,135	-				-2.1
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5,094,470	-				+2.0
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5,094,563	-		BWI76_RS24430	0.54	-0.3
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5,094,609	+		BWI76_RS24430	0.60	+0.1
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5,094,755	-		BWI76_RS24430	0.80	+1.7
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5,094,762	-		BWI76_RS24430	0.81	-2.7
5,094,762	-		BWI76_RS24430	0.81	-0.4
5,094,762	-		BWI76_RS24430	0.81	-1.6
5,094,762	-		BWI76_RS24430	0.81	-2.9
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5,094,763	-		BWI76_RS24430	0.81	+0.1
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5,094,840	+				+2.2
5,094,840	-				+2.3
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5,094,840	-				-1.4
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5,094,851	+				-2.3
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5,094,852	+				+0.6
5,094,852	+				+1.0
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5,094,860	+				+3.9
5,094,860	+				-2.6
5,094,860	-				+3.3
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5,094,860	-				-1.1
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5,094,862	+				-1.2
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5,094,870	-				+1.0
5,094,870	-				-2.3
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5,095,045	-		BWI76_RS24435	0.13	+3.0
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5,095,102	+		BWI76_RS24435	0.19	-1.1
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5,095,102	+		BWI76_RS24435	0.19	-0.7
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5,095,110	-		BWI76_RS24435	0.19	-1.2
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