Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24175 and BWI76_RS24180 are separated by 70 nucleotides BWI76_RS24180 and BWI76_RS24185 are separated by 168 nucleotides BWI76_RS24185 and BWI76_RS24190 are separated by 105 nucleotides BWI76_RS24190 and BWI76_RS24195 are separated by 135 nucleotides
BWI76_RS24175: BWI76_RS24175 - ornithine decarboxylase, at 5,039,952 to 5,042,090
_RS24175
BWI76_RS24180: BWI76_RS24180 - hypothetical protein, at 5,042,161 to 5,042,359
_RS24180
BWI76_RS24185: BWI76_RS24185 - membrane protein, at 5,042,528 to 5,043,244
_RS24185
BWI76_RS24190: BWI76_RS24190 - tRNA-Phe, at 5,043,350 to 5,043,425
_RS24190
BWI76_RS24195: BWI76_RS24195 - anion transporter, at 5,043,561 to 5,044,949
_RS24195
Position (kb) 5042
5043
5044 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5041.580 kb on - strand, within BWI76_RS24175 at 5041.638 kb on - strand, within BWI76_RS24175 at 5041.690 kb on + strand, within BWI76_RS24175 at 5041.839 kb on + strand, within BWI76_RS24175 at 5041.920 kb on + strand at 5042.011 kb on - strand at 5042.013 kb on + strand at 5042.013 kb on + strand at 5042.013 kb on + strand at 5042.021 kb on - strand at 5042.021 kb on - strand at 5042.036 kb on + strand at 5042.057 kb on - strand at 5042.138 kb on + strand at 5042.141 kb on + strand at 5042.160 kb on + strand at 5042.249 kb on + strand, within BWI76_RS24180 at 5042.257 kb on - strand, within BWI76_RS24180 at 5042.372 kb on + strand at 5042.407 kb on + strand at 5042.407 kb on + strand at 5042.528 kb on + strand at 5042.692 kb on + strand, within BWI76_RS24185 at 5042.722 kb on - strand, within BWI76_RS24185 at 5042.773 kb on + strand, within BWI76_RS24185 at 5042.781 kb on - strand, within BWI76_RS24185 at 5042.843 kb on + strand, within BWI76_RS24185 at 5042.999 kb on - strand, within BWI76_RS24185 at 5043.130 kb on - strand, within BWI76_RS24185 at 5043.138 kb on - strand, within BWI76_RS24185 at 5043.514 kb on - strand at 5043.514 kb on - strand at 5043.519 kb on - strand at 5043.539 kb on - strand at 5043.612 kb on + strand at 5043.613 kb on + strand at 5043.623 kb on + strand at 5043.633 kb on + strand at 5043.636 kb on - strand at 5043.639 kb on - strand at 5043.645 kb on - strand at 5043.684 kb on - strand at 5043.691 kb on + strand at 5043.691 kb on + strand at 5043.699 kb on - strand at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand, within BWI76_RS24195 at 5043.701 kb on + strand at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.709 kb on - strand, within BWI76_RS24195 at 5043.743 kb on + strand, within BWI76_RS24195 at 5043.748 kb on + strand, within BWI76_RS24195 at 5043.764 kb on - strand, within BWI76_RS24195 at 5043.773 kb on - strand, within BWI76_RS24195 at 5043.774 kb on - strand, within BWI76_RS24195 at 5043.790 kb on + strand, within BWI76_RS24195 at 5043.795 kb on + strand, within BWI76_RS24195 at 5043.800 kb on + strand, within BWI76_RS24195 at 5043.800 kb on + strand, within BWI76_RS24195 at 5043.800 kb on + strand, within BWI76_RS24195 at 5043.803 kb on - strand at 5043.803 kb on - strand, within BWI76_RS24195 at 5043.803 kb on - strand, within BWI76_RS24195 at 5043.803 kb on - strand, within BWI76_RS24195 at 5043.805 kb on + strand, within BWI76_RS24195 at 5043.808 kb on - strand, within BWI76_RS24195 at 5043.813 kb on - strand, within BWI76_RS24195 at 5043.848 kb on - strand, within BWI76_RS24195 at 5043.893 kb on + strand, within BWI76_RS24195 at 5043.901 kb on - strand, within BWI76_RS24195 at 5043.903 kb on + strand, within BWI76_RS24195 at 5043.903 kb on + strand, within BWI76_RS24195 at 5043.906 kb on - strand, within BWI76_RS24195 at 5043.908 kb on + strand, within BWI76_RS24195 at 5043.908 kb on + strand at 5043.913 kb on + strand, within BWI76_RS24195 at 5043.916 kb on - strand, within BWI76_RS24195 at 5043.918 kb on + strand, within BWI76_RS24195 at 5043.918 kb on + strand, within BWI76_RS24195 at 5043.924 kb on + strand, within BWI76_RS24195 at 5043.926 kb on - strand, within BWI76_RS24195 at 5043.931 kb on - strand, within BWI76_RS24195 at 5043.933 kb on + strand, within BWI76_RS24195 at 5043.948 kb on - strand, within BWI76_RS24195 at 5043.992 kb on + strand, within BWI76_RS24195 at 5044.005 kb on + strand, within BWI76_RS24195 at 5044.013 kb on - strand at 5044.013 kb on - strand at 5044.020 kb on - strand at 5044.036 kb on + strand, within BWI76_RS24195 at 5044.054 kb on - strand, within BWI76_RS24195 at 5044.054 kb on - strand, within BWI76_RS24195 at 5044.063 kb on + strand, within BWI76_RS24195 at 5044.072 kb on + strand, within BWI76_RS24195 at 5044.082 kb on + strand, within BWI76_RS24195 at 5044.082 kb on + strand, within BWI76_RS24195 at 5044.082 kb on + strand, within BWI76_RS24195 at 5044.090 kb on - strand, within BWI76_RS24195 at 5044.090 kb on - strand, within BWI76_RS24195 at 5044.097 kb on + strand, within BWI76_RS24195 at 5044.098 kb on - strand, within BWI76_RS24195 at 5044.110 kb on - strand, within BWI76_RS24195 at 5044.110 kb on - strand, within BWI76_RS24195 at 5044.110 kb on - strand, within BWI76_RS24195 at 5044.112 kb on - strand, within BWI76_RS24195 at 5044.131 kb on - strand, within BWI76_RS24195 at 5044.147 kb on + strand, within BWI76_RS24195 at 5044.147 kb on + strand at 5044.170 kb on + strand, within BWI76_RS24195 at 5044.173 kb on - strand, within BWI76_RS24195 at 5044.190 kb on + strand, within BWI76_RS24195 at 5044.210 kb on - strand, within BWI76_RS24195 at 5044.213 kb on + strand, within BWI76_RS24195 at 5044.220 kb on + strand, within BWI76_RS24195 at 5044.220 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 5,041,580 - BWI76_RS24175 0.76 -0.1 5,041,638 - BWI76_RS24175 0.79 +1.3 5,041,690 + BWI76_RS24175 0.81 +1.5 5,041,839 + BWI76_RS24175 0.88 +0.0 5,041,920 + -0.4 5,042,011 - -0.1 5,042,013 + +0.4 5,042,013 + +0.2 5,042,013 + +1.3 5,042,021 - +0.6 5,042,021 - -1.0 5,042,036 + +0.6 5,042,057 - +0.4 5,042,138 + +2.8 5,042,141 + +0.9 5,042,160 + -0.1 5,042,249 + BWI76_RS24180 0.44 +0.8 5,042,257 - BWI76_RS24180 0.48 -0.7 5,042,372 + -0.9 5,042,407 + -1.1 5,042,407 + +1.7 5,042,528 + -1.1 5,042,692 + BWI76_RS24185 0.23 -2.1 5,042,722 - BWI76_RS24185 0.27 +0.5 5,042,773 + BWI76_RS24185 0.34 -0.3 5,042,781 - BWI76_RS24185 0.35 +1.0 5,042,843 + BWI76_RS24185 0.44 +2.5 5,042,999 - BWI76_RS24185 0.66 +0.2 5,043,130 - BWI76_RS24185 0.84 -2.8 5,043,138 - BWI76_RS24185 0.85 +0.9 5,043,514 - +0.1 5,043,514 - -1.5 5,043,519 - -0.7 5,043,539 - -0.8 5,043,612 + -0.3 5,043,613 + -2.1 5,043,623 + -0.6 5,043,633 + -0.6 5,043,636 - -0.1 5,043,639 - +0.6 5,043,645 - +0.8 5,043,684 - -0.7 5,043,691 + -0.7 5,043,691 + +0.9 5,043,699 - -2.4 5,043,701 + BWI76_RS24195 0.10 -0.2 5,043,701 + BWI76_RS24195 0.10 -2.1 5,043,701 + BWI76_RS24195 0.10 -1.7 5,043,701 + BWI76_RS24195 0.10 -1.3 5,043,701 + BWI76_RS24195 0.10 +2.9 5,043,701 + BWI76_RS24195 0.10 -3.1 5,043,701 + BWI76_RS24195 0.10 -0.4 5,043,701 + -0.4 5,043,709 - BWI76_RS24195 0.11 -1.1 5,043,709 - BWI76_RS24195 0.11 +0.8 5,043,709 - BWI76_RS24195 0.11 -1.9 5,043,709 - BWI76_RS24195 0.11 -1.8 5,043,709 - BWI76_RS24195 0.11 +0.3 5,043,709 - BWI76_RS24195 0.11 -0.1 5,043,709 - BWI76_RS24195 0.11 -0.5 5,043,709 - BWI76_RS24195 0.11 -0.2 5,043,709 - BWI76_RS24195 0.11 -0.6 5,043,709 - BWI76_RS24195 0.11 +2.9 5,043,709 - BWI76_RS24195 0.11 -1.1 5,043,709 - BWI76_RS24195 0.11 -0.7 5,043,709 - BWI76_RS24195 0.11 -1.6 5,043,743 + BWI76_RS24195 0.13 -1.5 5,043,748 + BWI76_RS24195 0.13 -1.2 5,043,764 - BWI76_RS24195 0.15 -0.4 5,043,773 - BWI76_RS24195 0.15 -1.0 5,043,774 - BWI76_RS24195 0.15 -0.6 5,043,790 + BWI76_RS24195 0.16 -0.4 5,043,795 + BWI76_RS24195 0.17 -1.3 5,043,800 + BWI76_RS24195 0.17 -0.3 5,043,800 + BWI76_RS24195 0.17 +0.4 5,043,800 + BWI76_RS24195 0.17 -0.6 5,043,803 - +1.9 5,043,803 - BWI76_RS24195 0.17 +0.7 5,043,803 - BWI76_RS24195 0.17 -0.1 5,043,803 - BWI76_RS24195 0.17 +1.2 5,043,805 + BWI76_RS24195 0.18 -1.3 5,043,808 - BWI76_RS24195 0.18 +1.6 5,043,813 - BWI76_RS24195 0.18 -1.1 5,043,848 - BWI76_RS24195 0.21 +0.1 5,043,893 + BWI76_RS24195 0.24 -1.2 5,043,901 - BWI76_RS24195 0.24 -0.6 5,043,903 + BWI76_RS24195 0.25 +0.4 5,043,903 + BWI76_RS24195 0.25 -0.3 5,043,906 - BWI76_RS24195 0.25 -2.1 5,043,908 + BWI76_RS24195 0.25 +0.6 5,043,908 + +3.1 5,043,913 + BWI76_RS24195 0.25 +0.5 5,043,916 - BWI76_RS24195 0.26 -2.9 5,043,918 + BWI76_RS24195 0.26 -0.0 5,043,918 + BWI76_RS24195 0.26 +0.0 5,043,924 + BWI76_RS24195 0.26 -0.0 5,043,926 - BWI76_RS24195 0.26 -0.9 5,043,931 - BWI76_RS24195 0.27 -0.2 5,043,933 + BWI76_RS24195 0.27 +3.8 5,043,948 - BWI76_RS24195 0.28 -1.3 5,043,992 + BWI76_RS24195 0.31 +1.4 5,044,005 + BWI76_RS24195 0.32 -1.2 5,044,013 - +0.9 5,044,013 - -0.4 5,044,020 - -0.5 5,044,036 + BWI76_RS24195 0.34 -0.4 5,044,054 - BWI76_RS24195 0.35 -1.5 5,044,054 - BWI76_RS24195 0.35 -0.1 5,044,063 + BWI76_RS24195 0.36 -0.9 5,044,072 + BWI76_RS24195 0.37 -0.6 5,044,082 + BWI76_RS24195 0.38 +0.5 5,044,082 + BWI76_RS24195 0.38 -0.2 5,044,082 + BWI76_RS24195 0.38 -4.0 5,044,090 - BWI76_RS24195 0.38 -1.0 5,044,090 - BWI76_RS24195 0.38 -0.0 5,044,097 + BWI76_RS24195 0.39 +0.1 5,044,098 - BWI76_RS24195 0.39 +0.2 5,044,110 - BWI76_RS24195 0.40 -0.0 5,044,110 - BWI76_RS24195 0.40 -0.8 5,044,110 - BWI76_RS24195 0.40 -0.0 5,044,112 - BWI76_RS24195 0.40 +0.7 5,044,131 - BWI76_RS24195 0.41 +0.1 5,044,147 + BWI76_RS24195 0.42 +1.1 5,044,147 + -0.8 5,044,170 + BWI76_RS24195 0.44 +0.1 5,044,173 - BWI76_RS24195 0.44 -2.9 5,044,190 + BWI76_RS24195 0.45 +0.0 5,044,210 - BWI76_RS24195 0.47 -0.6 5,044,213 + BWI76_RS24195 0.47 +0.3 5,044,220 + BWI76_RS24195 0.47 +0.7 5,044,220 - BWI76_RS24195 0.47 -2.1 5,044,228 - BWI76_RS24195 0.48 -0.1 5,044,228 - BWI76_RS24195 0.48 +0.5
Or see this region's nucleotide sequence