Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23645

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
4,933,029	+		BWI76_RS23640	0.52	+0.4
4,933,037	-		BWI76_RS23640	0.53	-0.2
4,933,048	-		BWI76_RS23640	0.54	+0.2
4,933,089	+		BWI76_RS23640	0.57	+4.8
4,933,091	-		BWI76_RS23640	0.58	-0.6
4,933,100	+		BWI76_RS23640	0.58	+0.9
4,933,108	-		BWI76_RS23640	0.59	-0.9
4,933,108	-		BWI76_RS23640	0.59	+0.2
4,933,108	-		BWI76_RS23640	0.59	+0.2
4,933,131	+		BWI76_RS23640	0.61	+0.1
4,933,133	+		BWI76_RS23640	0.62	+1.0
4,933,133	+		BWI76_RS23640	0.62	+0.5
4,933,139	-		BWI76_RS23640	0.62	+0.6
4,933,211	+		BWI76_RS23640	0.69	+1.8
4,933,243	+		BWI76_RS23640	0.72	+0.7
4,933,265	+		BWI76_RS23640	0.74	+0.7
4,933,287	-		BWI76_RS23640	0.76	+2.4
4,933,320	+		BWI76_RS23640	0.79	-1.2
4,933,328	-		BWI76_RS23640	0.80	-0.4
4,933,328	-		BWI76_RS23640	0.80	-1.7
4,933,332	+		BWI76_RS23640	0.80	+0.3
4,933,339	+		BWI76_RS23640	0.81	+0.9
4,933,347	+		BWI76_RS23640	0.82	+0.3
4,933,362	+		BWI76_RS23640	0.83	+0.1
4,933,364	+				+1.2
4,933,364	+		BWI76_RS23640	0.83	-0.4
4,933,365	-		BWI76_RS23640	0.83	-0.4
4,933,369	+		BWI76_RS23640	0.84	-0.5
4,933,369	+				-0.8
4,933,369	+		BWI76_RS23640	0.84	-0.7
4,933,369	+		BWI76_RS23640	0.84	+0.0
4,933,377	+		BWI76_RS23640	0.84	-1.7
4,933,377	+		BWI76_RS23640	0.84	-3.8
4,933,377	+		BWI76_RS23640	0.84	-0.6
4,933,377	-		BWI76_RS23640	0.84	+0.1
4,933,377	-		BWI76_RS23640	0.84	-1.5
4,933,385	-		BWI76_RS23640	0.85	+1.6
4,933,385	-		BWI76_RS23640	0.85	-1.1
4,933,385	-		BWI76_RS23640	0.85	-0.0
4,933,385	-		BWI76_RS23640	0.85	+1.3
4,933,385	-		BWI76_RS23640	0.85	-3.0
4,933,385	-		BWI76_RS23640	0.85	-1.1
4,933,390	-		BWI76_RS23640	0.86	-0.4
4,933,392	+		BWI76_RS23640	0.86	-0.5
4,933,422	+		BWI76_RS23640	0.89	-0.0
4,933,440	-				-1.0
4,933,447	-				-1.8
4,933,461	+				+0.2
4,933,462	+				-0.8
4,933,462	+				-0.7
4,933,468	-				-0.0
4,933,469	-				+0.5
4,933,470	-				+0.3
4,933,478	-				-1.8
4,933,480	+				+0.6
4,933,487	-				+0.8
4,933,488	-				-0.1
4,933,488	-				+0.6
4,933,492	-				-0.3
4,933,492	-				+0.6
4,933,502	-				+0.6
4,933,516	+				-0.0
4,933,516	+				-0.2
4,933,516	+				-2.2
4,933,516	+				-1.2
4,933,516	+				+0.8
4,933,516	+				-0.9
4,933,516	+				-0.1
4,933,524	-				-1.4
4,933,524	-				-0.8
4,933,524	-				+0.2
4,933,524	-				+3.3
4,933,524	-				-0.0
4,933,524	-				-0.0
4,933,524	-				+0.0
4,933,524	-				-0.4
4,933,524	-				+0.8
4,933,524	-				+0.6
4,933,524	-				+0.7
4,933,524	-				+0.4
4,933,524	-				+0.6
4,933,524	-				+0.3
4,933,524	-				+0.7
4,933,529	-				+0.5
4,933,534	-				-0.4
4,933,541	+				-0.4
4,933,549	+				-0.0
4,933,615	-				-0.6
4,933,647	+				+0.9
4,933,662	+				-1.3
4,933,783	+				+2.8
4,933,795	+				-1.6
4,933,795	+				+0.4
4,933,795	+				-2.7
4,933,795	+				+0.5
4,933,795	+				-2.5
4,933,795	+				-2.1
4,933,801	-				+0.9
4,933,803	-				-1.2
4,933,803	-				+2.7
4,933,803	-				-2.2
4,933,803	-				-0.3
4,933,803	-				-3.1
4,933,803	-				-3.3
4,933,803	-				-0.2
4,933,803	-				-1.3
4,933,840	+				-1.2
4,933,894	+				-0.9
4,933,894	+				-0.6
4,933,895	+				-0.8
4,933,895	+				+0.2
4,933,901	-				+0.6
4,933,902	-				+0.5
4,933,902	-				-2.0
4,933,902	-				+1.2
4,933,903	-				+1.4
4,933,903	-				+0.3
4,933,903	-				-2.7
4,933,911	+				-3.5
4,933,917	+				-0.1
4,933,927	-				-2.4
4,934,068	-				-0.9
4,934,083	-				-1.2
4,934,106	-				-1.0
4,934,113	-				-0.8
4,934,113	-				-1.7
4,934,113	-				-1.4
4,934,140	+		BWI76_RS23645	0.10	+1.8
4,934,148	-				-0.7
4,934,148	-		BWI76_RS23645	0.11	+1.7
4,934,148	-		BWI76_RS23645	0.11	-2.0
4,934,148	-		BWI76_RS23645	0.11	-1.0
4,934,148	-		BWI76_RS23645	0.11	-3.1
4,934,150	+		BWI76_RS23645	0.11	-0.5
4,934,150	+		BWI76_RS23645	0.11	-4.1
4,934,150	+		BWI76_RS23645	0.11	+0.3
4,934,150	+		BWI76_RS23645	0.11	-0.2
4,934,157	-		BWI76_RS23645	0.11	-0.4
4,934,157	-		BWI76_RS23645	0.11	-3.3
4,934,157	-				+0.8
4,934,158	-		BWI76_RS23645	0.11	-2.3
4,934,158	-		BWI76_RS23645	0.11	-0.5
4,934,158	-		BWI76_RS23645	0.11	-0.4
4,934,158	-		BWI76_RS23645	0.11	-1.7
4,934,158	-		BWI76_RS23645	0.11	-1.4
4,934,158	-		BWI76_RS23645	0.11	-2.1
4,934,158	-		BWI76_RS23645	0.11	+0.1
4,934,158	-		BWI76_RS23645	0.11	+0.2
4,934,221	+		BWI76_RS23645	0.16	-0.5
4,934,228	+		BWI76_RS23645	0.16	-2.3
4,934,228	+		BWI76_RS23645	0.16	-0.5
4,934,228	+		BWI76_RS23645	0.16	-0.7
4,934,228	+		BWI76_RS23645	0.16	-1.4
4,934,236	-		BWI76_RS23645	0.17	-0.5
4,934,259	+		BWI76_RS23645	0.18	-1.2
4,934,266	+		BWI76_RS23645	0.19	-1.1
4,934,266	+		BWI76_RS23645	0.19	-0.8
4,934,266	+		BWI76_RS23645	0.19	+0.6
4,934,266	+		BWI76_RS23645	0.19	-0.7
4,934,266	-		BWI76_RS23645	0.19	-0.2
4,934,268	+		BWI76_RS23645	0.19	+1.7
4,934,268	+		BWI76_RS23645	0.19	-1.7
4,934,268	+		BWI76_RS23645	0.19	-1.0
4,934,268	+		BWI76_RS23645	0.19	-1.4
4,934,268	+		BWI76_RS23645	0.19	-2.5
4,934,268	+		BWI76_RS23645	0.19	-0.9
4,934,273	+		BWI76_RS23645	0.19	-0.3
4,934,273	+		BWI76_RS23645	0.19	-0.0
4,934,274	-		BWI76_RS23645	0.19	+0.8
4,934,274	-		BWI76_RS23645	0.19	+0.8
4,934,276	-		BWI76_RS23645	0.20	+0.2
4,934,276	-				+0.5
4,934,276	-		BWI76_RS23645	0.20	-2.1
4,934,281	-		BWI76_RS23645	0.20	-1.3
4,934,281	-				+0.5
4,934,282	+		BWI76_RS23645	0.20	-1.8
4,934,282	+		BWI76_RS23645	0.20	-3.0
4,934,290	+		BWI76_RS23645	0.21	-0.6
4,934,292	+		BWI76_RS23645	0.21	-0.4
4,934,296	+		BWI76_RS23645	0.21	+0.3
4,934,298	+		BWI76_RS23645	0.21	+1.5
4,934,302	+		BWI76_RS23645	0.21	-2.2
4,934,305	+		BWI76_RS23645	0.22	-0.7
4,934,308	+		BWI76_RS23645	0.22	-0.9
4,934,353	+		BWI76_RS23645	0.25	+0.2
4,934,353	+		BWI76_RS23645	0.25	-0.0
4,934,362	+		BWI76_RS23645	0.26	-0.6
4,934,383	+		BWI76_RS23645	0.27	-2.6
4,934,415	+		BWI76_RS23645	0.29	-0.5
4,934,415	-		BWI76_RS23645	0.29	-1.6
4,934,420	+		BWI76_RS23645	0.30	+0.4
4,934,434	+		BWI76_RS23645	0.31	-1.3
4,934,442	+		BWI76_RS23645	0.31	-0.8
4,934,442	+		BWI76_RS23645	0.31	-1.7
4,934,442	+		BWI76_RS23645	0.31	+0.8
4,934,442	+		BWI76_RS23645	0.31	-1.2
4,934,442	+		BWI76_RS23645	0.31	-0.4
4,934,442	+		BWI76_RS23645	0.31	-1.2
4,934,442	-		BWI76_RS23645	0.31	+0.1
4,934,442	-		BWI76_RS23645	0.31	-0.9
4,934,442	-		BWI76_RS23645	0.31	+0.3
4,934,442	-		BWI76_RS23645	0.31	-0.2
4,934,442	-				+2.8
4,934,448	+				+1.2
4,934,448	+		BWI76_RS23645	0.32	+0.7
4,934,448	+		BWI76_RS23645	0.32	+0.3
4,934,449	-		BWI76_RS23645	0.32	-0.5
4,934,450	+		BWI76_RS23645	0.32	-1.5
4,934,450	+		BWI76_RS23645	0.32	-1.1
4,934,450	+		BWI76_RS23645	0.32	-0.4
4,934,450	+		BWI76_RS23645	0.32	-3.5
4,934,450	+		BWI76_RS23645	0.32	-0.8
4,934,451	-		BWI76_RS23645	0.32	-2.0
4,934,451	-		BWI76_RS23645	0.32	-0.5
4,934,451	-		BWI76_RS23645	0.32	+0.2
4,934,451	-		BWI76_RS23645	0.32	-1.2
4,934,453	+		BWI76_RS23645	0.32	-2.3
4,934,453	+		BWI76_RS23645	0.32	-0.7
4,934,453	+		BWI76_RS23645	0.32	-2.0
4,934,453	+		BWI76_RS23645	0.32	+0.6
4,934,453	+		BWI76_RS23645	0.32	-0.1
4,934,453	+		BWI76_RS23645	0.32	-0.3
4,934,453	+		BWI76_RS23645	0.32	-0.4
4,934,453	+		BWI76_RS23645	0.32	-2.9
4,934,453	+		BWI76_RS23645	0.32	-0.1
4,934,453	+		BWI76_RS23645	0.32	+1.3
4,934,456	-		BWI76_RS23645	0.32	+1.8
4,934,458	+		BWI76_RS23645	0.32	-2.9
4,934,458	-		BWI76_RS23645	0.32	-1.5
4,934,458	-		BWI76_RS23645	0.32	+1.6
4,934,458	-		BWI76_RS23645	0.32	-1.6
4,934,458	-		BWI76_RS23645	0.32	+0.1
4,934,458	-		BWI76_RS23645	0.32	+1.5
4,934,461	+		BWI76_RS23645	0.33	+0.6
4,934,461	-		BWI76_RS23645	0.33	-1.4
4,934,461	-		BWI76_RS23645	0.33	-1.8
4,934,461	-		BWI76_RS23645	0.33	-1.8
4,934,461	-				+1.8
4,934,461	-		BWI76_RS23645	0.33	+0.8
4,934,461	-		BWI76_RS23645	0.33	-0.7
4,934,461	-		BWI76_RS23645	0.33	-2.0
4,934,461	-		BWI76_RS23645	0.33	+1.2
4,934,461	-		BWI76_RS23645	0.33	+1.4
4,934,461	-		BWI76_RS23645	0.33	-0.2
4,934,461	-		BWI76_RS23645	0.33	-0.1
4,934,461	-		BWI76_RS23645	0.33	-0.8
4,934,461	-		BWI76_RS23645	0.33	+0.2
4,934,461	-		BWI76_RS23645	0.33	-2.3
4,934,461	-		BWI76_RS23645	0.33	-1.6
4,934,466	-		BWI76_RS23645	0.33	+0.1
4,934,479	+		BWI76_RS23645	0.34	-2.9
4,934,545	+		BWI76_RS23645	0.39	-1.2
4,934,548	+		BWI76_RS23645	0.39	-2.0
4,934,556	-		BWI76_RS23645	0.39	+0.1
4,934,558	+		BWI76_RS23645	0.40	-1.8
4,934,558	+		BWI76_RS23645	0.40	-0.6
4,934,558	+		BWI76_RS23645	0.40	-2.5
4,934,558	+		BWI76_RS23645	0.40	-2.7
4,934,566	-		BWI76_RS23645	0.40	-1.7
4,934,566	-		BWI76_RS23645	0.40	+0.8
4,934,566	-		BWI76_RS23645	0.40	-2.0
4,934,566	-		BWI76_RS23645	0.40	-1.8
4,934,576	-		BWI76_RS23645	0.41	-1.3
4,934,587	-		BWI76_RS23645	0.42	-1.5
4,934,621	-		BWI76_RS23645	0.44	-1.7
4,934,621	-		BWI76_RS23645	0.44	-0.8
4,934,634	+		BWI76_RS23645	0.45	-1.5
4,934,642	+		BWI76_RS23645	0.45	-1.0
4,934,682	+		BWI76_RS23645	0.48	-3.1
4,934,683	+		BWI76_RS23645	0.48	-2.5
4,934,683	+		BWI76_RS23645	0.48	-0.5
4,934,683	+		BWI76_RS23645	0.48	-2.1
4,934,683	+		BWI76_RS23645	0.48	-0.5
4,934,690	-		BWI76_RS23645	0.49	+0.3
4,934,690	-		BWI76_RS23645	0.49	+1.6
4,934,691	-		BWI76_RS23645	0.49	-0.2
4,934,691	-		BWI76_RS23645	0.49	+1.1
4,934,691	-		BWI76_RS23645	0.49	+0.0
4,934,691	-		BWI76_RS23645	0.49	-1.0
4,934,693	+		BWI76_RS23645	0.49	-0.3
4,934,693	-		BWI76_RS23645	0.49	-2.1
4,934,693	-		BWI76_RS23645	0.49	+1.7
4,934,733	+		BWI76_RS23645	0.52	-1.0
4,934,738	+		BWI76_RS23645	0.52	-2.1
4,934,738	+		BWI76_RS23645	0.52	-0.5
4,934,738	+				-1.2
4,934,738	+		BWI76_RS23645	0.52	+1.3
4,934,746	-		BWI76_RS23645	0.53	-0.0
4,934,805	+		BWI76_RS23645	0.57	-1.1
4,934,856	-		BWI76_RS23645	0.61	+0.8
4,934,866	-		BWI76_RS23645	0.61	-1.5
4,934,993	+		BWI76_RS23645	0.70	-1.6
4,935,018	+		BWI76_RS23645	0.72	+1.3
4,935,023	+		BWI76_RS23645	0.72	+0.6
4,935,031	-		BWI76_RS23645	0.73	+0.2
4,935,074	-		BWI76_RS23645	0.76	-2.4
4,935,136	-		BWI76_RS23645	0.80	-0.4
4,935,203	-		BWI76_RS23645	0.85	-0.2
4,935,253	+		BWI76_RS23645	0.89	-0.3
4,935,253	+		BWI76_RS23645	0.89	-1.2
4,935,296	+				-1.0
4,935,296	+				+0.4
4,935,304	-				-1.2
4,935,408	+				-1.2
4,935,416	-				+0.1
4,935,416	-				-0.4
4,935,416	-				-0.0
4,935,418	+				-0.9
4,935,418	+				-0.2
4,935,418	+				-0.4
4,935,418	+				+1.4
4,935,418	+				+0.6
4,935,419	+				+1.1
4,935,425	+				-0.7
4,935,426	-				+0.2
4,935,426	-				-0.2
4,935,426	-				+0.0
4,935,426	-				+0.6
4,935,504	+				-0.1
4,935,582	-				+0.4
4,935,612	+		BWI76_RS23650	0.12	-1.7
4,935,630	-		BWI76_RS23650	0.13	-0.5
4,935,631	-		BWI76_RS23650	0.13	-2.3
4,935,697	+		BWI76_RS23650	0.17	-0.6
4,935,721	+		BWI76_RS23650	0.19	+0.2
4,935,721	+		BWI76_RS23650	0.19	-0.7
4,935,721	+		BWI76_RS23650	0.19	-0.1
4,935,721	+		BWI76_RS23650	0.19	-1.4
4,935,775	+		BWI76_RS23650	0.22	+0.1
4,935,918	+		BWI76_RS23650	0.32	+0.1
4,935,923	+		BWI76_RS23650	0.32	+0.4
4,935,963	-		BWI76_RS23650	0.35	+0.4
4,935,990	+		BWI76_RS23650	0.36	+0.8
4,936,010	-		BWI76_RS23650	0.38	-1.0
4,936,043	-		BWI76_RS23650	0.40	-0.6
4,936,093	+		BWI76_RS23650	0.43	+0.1
4,936,101	-		BWI76_RS23650	0.43	+0.6
4,936,149	+		BWI76_RS23650	0.47	-1.1
4,936,157	-		BWI76_RS23650	0.47	+1.8
4,936,157	-				-0.8
4,936,157	-		BWI76_RS23650	0.47	+0.4
4,936,157	-		BWI76_RS23650	0.47	-2.1
4,936,380	+		BWI76_RS23650	0.61	-0.2