Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotides BWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotides BWI76_RS23535 and BWI76_RS23540 are separated by 149 nucleotides
BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429
_RS23525
BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016
_RS23530
BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561
_RS23535
BWI76_RS23540: BWI76_RS23540 - putative lysine exporter protein, at 4,909,711 to 4,910,322
_RS23540
Position (kb)
4909
4910 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4908.128 kb on + strand, within BWI76_RS23525 at 4908.193 kb on - strand, within BWI76_RS23525 at 4908.522 kb on + strand at 4908.525 kb on - strand at 4908.527 kb on + strand at 4908.630 kb on - strand, within BWI76_RS23530 at 4908.742 kb on - strand, within BWI76_RS23530 at 4908.880 kb on + strand, within BWI76_RS23530 at 4908.987 kb on + strand at 4909.019 kb on - strand at 4909.091 kb on + strand at 4909.099 kb on - strand at 4909.161 kb on - strand, within BWI76_RS23535 at 4909.193 kb on - strand, within BWI76_RS23535 at 4909.247 kb on - strand, within BWI76_RS23535 at 4909.692 kb on + strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.705 kb on - strand at 4909.783 kb on + strand, within BWI76_RS23540 at 4910.010 kb on - strand, within BWI76_RS23540 at 4910.046 kb on - strand, within BWI76_RS23540 at 4910.130 kb on + strand, within BWI76_RS23540 at 4910.170 kb on - strand, within BWI76_RS23540 at 4910.187 kb on + strand, within BWI76_RS23540 at 4910.262 kb on + strand at 4910.291 kb on + strand at 4910.301 kb on - strand at 4910.313 kb on + strand at 4910.313 kb on + strand at 4910.328 kb on + strand at 4910.328 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.329 kb on + strand at 4910.336 kb on - strand at 4910.336 kb on - strand at 4910.336 kb on - strand at 4910.337 kb on - strand at 4910.337 kb on - strand at 4910.337 kb on - strand at 4910.348 kb on + strand at 4910.353 kb on + strand at 4910.353 kb on + strand at 4910.356 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.361 kb on - strand at 4910.417 kb on - strand at 4910.417 kb on - strand at 4910.417 kb on - strand at 4910.417 kb on - strand at 4910.417 kb on - strand at 4910.417 kb on - strand at 4910.421 kb on + strand at 4910.429 kb on - strand at 4910.429 kb on - strand at 4910.429 kb on - strand at 4910.433 kb on - strand at 4910.439 kb on - strand at 4910.445 kb on + strand at 4910.445 kb on + strand at 4910.450 kb on - strand at 4910.453 kb on + strand at 4910.458 kb on - strand at 4910.488 kb on + strand at 4910.488 kb on + strand at 4910.495 kb on - strand at 4910.496 kb on - strand at 4910.498 kb on + strand at 4910.516 kb on - strand at 4910.516 kb on - strand at 4910.516 kb on - strand at 4910.521 kb on - strand at 4910.521 kb on - strand at 4910.521 kb on - strand at 4910.521 kb on - strand at 4910.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 4,908,128 + BWI76_RS23525 0.66 +0.3 4,908,193 - BWI76_RS23525 0.73 -3.2 4,908,522 + -2.4 4,908,525 - -2.8 4,908,527 + +0.8 4,908,630 - BWI76_RS23530 0.24 -2.2 4,908,742 - BWI76_RS23530 0.46 -2.6 4,908,880 + BWI76_RS23530 0.73 -0.8 4,908,987 + -4.6 4,909,019 - +0.2 4,909,091 + -0.9 4,909,099 - -2.2 4,909,161 - BWI76_RS23535 0.13 +0.2 4,909,193 - BWI76_RS23535 0.20 +0.5 4,909,247 - BWI76_RS23535 0.32 +3.0 4,909,692 + -0.2 4,909,705 - -1.1 4,909,705 - +0.8 4,909,705 - +0.2 4,909,783 + BWI76_RS23540 0.12 -1.8 4,910,010 - BWI76_RS23540 0.49 +0.4 4,910,046 - BWI76_RS23540 0.55 +0.2 4,910,130 + BWI76_RS23540 0.68 +0.8 4,910,170 - BWI76_RS23540 0.75 -2.0 4,910,187 + BWI76_RS23540 0.78 -3.1 4,910,262 + -0.3 4,910,291 + +0.4 4,910,301 - -2.4 4,910,313 + +0.6 4,910,313 + -0.1 4,910,328 + +0.1 4,910,328 + -1.7 4,910,329 + +0.6 4,910,329 + +0.4 4,910,329 + +0.3 4,910,329 + -0.5 4,910,329 + +0.8 4,910,329 + +0.0 4,910,329 + -0.0 4,910,329 + -0.3 4,910,336 - -0.0 4,910,336 - +0.2 4,910,336 - +0.7 4,910,337 - +0.3 4,910,337 - -1.9 4,910,337 - -1.6 4,910,348 + -0.4 4,910,353 + -0.0 4,910,353 + +0.2 4,910,356 - -1.0 4,910,361 - +0.0 4,910,361 - +0.6 4,910,361 - -1.4 4,910,361 - +0.1 4,910,361 - -1.7 4,910,361 - -0.2 4,910,361 - -0.1 4,910,417 - +1.3 4,910,417 - -0.9 4,910,417 - -1.8 4,910,417 - -1.5 4,910,417 - -0.4 4,910,417 - +1.4 4,910,421 + -2.4 4,910,429 - -0.2 4,910,429 - -3.3 4,910,429 - -1.3 4,910,433 - -0.2 4,910,439 - -0.5 4,910,445 + -2.8 4,910,445 + -0.6 4,910,450 - +0.2 4,910,453 + -0.7 4,910,458 - -1.9 4,910,488 + +0.0 4,910,488 + +0.5 4,910,495 - -0.8 4,910,496 - -1.6 4,910,498 + -1.0 4,910,516 - +0.5 4,910,516 - -0.1 4,910,516 - +0.7 4,910,521 - +1.6 4,910,521 - -1.2 4,910,521 - -1.6 4,910,521 - -1.5 4,910,541 - -2.0
Or see this region's nucleotide sequence