Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23535

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23525 and BWI76_RS23530 are separated by 80 nucleotidesBWI76_RS23530 and BWI76_RS23535 are separated by 83 nucleotidesBWI76_RS23535 and BWI76_RS23540 are separated by 149 nucleotides BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429 _RS23525 BWI76_RS23530: BWI76_RS23530 - MarR family transcriptional regulator, at 4,908,510 to 4,909,016 _RS23530 BWI76_RS23535: BWI76_RS23535 - hypothetical protein, at 4,909,100 to 4,909,561 _RS23535 BWI76_RS23540: BWI76_RS23540 - putative lysine exporter protein, at 4,909,711 to 4,910,322 _RS23540 Position (kb) 4909 4910Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4908.128 kb on + strand, within BWI76_RS23525at 4908.193 kb on - strand, within BWI76_RS23525at 4908.522 kb on + strandat 4908.525 kb on - strandat 4908.527 kb on + strandat 4908.630 kb on - strand, within BWI76_RS23530at 4908.742 kb on - strand, within BWI76_RS23530at 4908.880 kb on + strand, within BWI76_RS23530at 4908.987 kb on + strandat 4909.019 kb on - strandat 4909.091 kb on + strandat 4909.099 kb on - strandat 4909.161 kb on - strand, within BWI76_RS23535at 4909.193 kb on - strand, within BWI76_RS23535at 4909.247 kb on - strand, within BWI76_RS23535at 4909.692 kb on + strandat 4909.705 kb on - strandat 4909.705 kb on - strandat 4909.705 kb on - strandat 4909.783 kb on + strand, within BWI76_RS23540at 4910.010 kb on - strand, within BWI76_RS23540at 4910.046 kb on - strand, within BWI76_RS23540at 4910.130 kb on + strand, within BWI76_RS23540at 4910.170 kb on - strand, within BWI76_RS23540at 4910.187 kb on + strand, within BWI76_RS23540at 4910.262 kb on + strandat 4910.291 kb on + strandat 4910.301 kb on - strandat 4910.313 kb on + strandat 4910.313 kb on + strandat 4910.328 kb on + strandat 4910.328 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.329 kb on + strandat 4910.336 kb on - strandat 4910.336 kb on - strandat 4910.336 kb on - strandat 4910.337 kb on - strandat 4910.337 kb on - strandat 4910.337 kb on - strandat 4910.348 kb on + strandat 4910.353 kb on + strandat 4910.353 kb on + strandat 4910.356 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.361 kb on - strandat 4910.417 kb on - strandat 4910.417 kb on - strandat 4910.417 kb on - strandat 4910.417 kb on - strandat 4910.417 kb on - strandat 4910.417 kb on - strandat 4910.421 kb on + strandat 4910.429 kb on - strandat 4910.429 kb on - strandat 4910.429 kb on - strandat 4910.433 kb on - strandat 4910.439 kb on - strandat 4910.445 kb on + strandat 4910.445 kb on + strandat 4910.450 kb on - strandat 4910.453 kb on + strandat 4910.458 kb on - strandat 4910.488 kb on + strandat 4910.488 kb on + strandat 4910.495 kb on - strandat 4910.496 kb on - strandat 4910.498 kb on + strandat 4910.516 kb on - strandat 4910.516 kb on - strandat 4910.516 kb on - strandat 4910.521 kb on - strandat 4910.521 kb on - strandat 4910.521 kb on - strandat 4910.521 kb on - strandat 4910.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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4,908,128 + BWI76_RS23525 0.66 +0.3
4,908,193 - BWI76_RS23525 0.73 -3.2
4,908,522 + -2.4
4,908,525 - -2.8
4,908,527 + +0.8
4,908,630 - BWI76_RS23530 0.24 -2.2
4,908,742 - BWI76_RS23530 0.46 -2.6
4,908,880 + BWI76_RS23530 0.73 -0.8
4,908,987 + -4.6
4,909,019 - +0.2
4,909,091 + -0.9
4,909,099 - -2.2
4,909,161 - BWI76_RS23535 0.13 +0.2
4,909,193 - BWI76_RS23535 0.20 +0.5
4,909,247 - BWI76_RS23535 0.32 +3.0
4,909,692 + -0.2
4,909,705 - -1.1
4,909,705 - +0.8
4,909,705 - +0.2
4,909,783 + BWI76_RS23540 0.12 -1.8
4,910,010 - BWI76_RS23540 0.49 +0.4
4,910,046 - BWI76_RS23540 0.55 +0.2
4,910,130 + BWI76_RS23540 0.68 +0.8
4,910,170 - BWI76_RS23540 0.75 -2.0
4,910,187 + BWI76_RS23540 0.78 -3.1
4,910,262 + -0.3
4,910,291 + +0.4
4,910,301 - -2.4
4,910,313 + +0.6
4,910,313 + -0.1
4,910,328 + +0.1
4,910,328 + -1.7
4,910,329 + +0.6
4,910,329 + +0.4
4,910,329 + +0.3
4,910,329 + -0.5
4,910,329 + +0.8
4,910,329 + +0.0
4,910,329 + -0.0
4,910,329 + -0.3
4,910,336 - -0.0
4,910,336 - +0.2
4,910,336 - +0.7
4,910,337 - +0.3
4,910,337 - -1.9
4,910,337 - -1.6
4,910,348 + -0.4
4,910,353 + -0.0
4,910,353 + +0.2
4,910,356 - -1.0
4,910,361 - +0.0
4,910,361 - +0.6
4,910,361 - -1.4
4,910,361 - +0.1
4,910,361 - -1.7
4,910,361 - -0.2
4,910,361 - -0.1
4,910,417 - +1.3
4,910,417 - -0.9
4,910,417 - -1.8
4,910,417 - -1.5
4,910,417 - -0.4
4,910,417 - +1.4
4,910,421 + -2.4
4,910,429 - -0.2
4,910,429 - -3.3
4,910,429 - -1.3
4,910,433 - -0.2
4,910,439 - -0.5
4,910,445 + -2.8
4,910,445 + -0.6
4,910,450 - +0.2
4,910,453 + -0.7
4,910,458 - -1.9
4,910,488 + +0.0
4,910,488 + +0.5
4,910,495 - -0.8
4,910,496 - -1.6
4,910,498 + -1.0
4,910,516 - +0.5
4,910,516 - -0.1
4,910,516 - +0.7
4,910,521 - +1.6
4,910,521 - -1.2
4,910,521 - -1.6
4,910,521 - -1.5
4,910,541 - -2.0

Or see this region's nucleotide sequence