Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23500

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
4,902,765	-		BWI76_RS23495	0.65	-0.9
4,902,843	-		BWI76_RS23495	0.68	-1.5
4,902,846	+		BWI76_RS23495	0.68	+0.8
4,902,902	+		BWI76_RS23495	0.70	-0.1
4,903,101	-		BWI76_RS23495	0.78	-0.3
4,903,302	+		BWI76_RS23495	0.87	-1.3
4,903,412	-				-2.2
4,903,423	+				+0.3
4,903,431	+				-0.9
4,903,431	+				-1.2
4,903,431	+				-1.2
4,903,439	-				-1.6
4,903,439	-				-2.8
4,903,566	+				+1.8
4,903,584	-				-0.6
4,903,596	-				-5.1
4,903,607	-				-0.5
4,903,725	-		BWI76_RS23500	0.11	+0.3
4,903,729	+		BWI76_RS23500	0.12	-1.5
4,903,729	+		BWI76_RS23500	0.12	-1.6
4,903,739	+		BWI76_RS23500	0.13	-1.7
4,903,825	-		BWI76_RS23500	0.25	-0.5
4,903,825	-		BWI76_RS23500	0.25	+0.4
4,903,863	+		BWI76_RS23500	0.31	+0.6
4,903,911	+		BWI76_RS23500	0.38	+1.8
4,903,911	+		BWI76_RS23500	0.38	+0.8
4,903,918	-		BWI76_RS23500	0.39	-0.3
4,903,946	-		BWI76_RS23500	0.43	-0.1
4,903,970	-		BWI76_RS23500	0.46	-1.6
4,903,981	+		BWI76_RS23500	0.48	-1.1
4,903,989	-		BWI76_RS23500	0.49	-0.2
4,903,989	-		BWI76_RS23500	0.49	-2.1
4,903,991	+		BWI76_RS23500	0.49	-3.9
4,903,995	+		BWI76_RS23500	0.50	-2.2
4,903,995	+		BWI76_RS23500	0.50	-1.2
4,903,995	+		BWI76_RS23500	0.50	-0.7
4,903,995	+		BWI76_RS23500	0.50	-1.1
4,904,004	-		BWI76_RS23500	0.51	-1.3
4,904,029	-		BWI76_RS23500	0.54	-3.0
4,904,034	-		BWI76_RS23500	0.55	-2.4
4,904,034	-		BWI76_RS23500	0.55	-2.1
4,904,041	+		BWI76_RS23500	0.56	-2.2
4,904,041	+		BWI76_RS23500	0.56	-1.6
4,904,075	+		BWI76_RS23500	0.61	-3.1
4,904,097	-		BWI76_RS23500	0.64	+1.5
4,904,152	-		BWI76_RS23500	0.72	-2.5
4,904,170	+		BWI76_RS23500	0.75	-0.7
4,904,170	+		BWI76_RS23500	0.75	-1.6
4,904,170	+		BWI76_RS23500	0.75	+2.8
4,904,170	+		BWI76_RS23500	0.75	+1.5
4,904,170	+		BWI76_RS23500	0.75	-0.0
4,904,170	+		BWI76_RS23500	0.75	-2.0
4,904,170	+		BWI76_RS23500	0.75	+1.2
4,904,170	+		BWI76_RS23500	0.75	-0.7
4,904,176	+		BWI76_RS23500	0.75	-0.0
4,904,178	-		BWI76_RS23500	0.76	+3.1
4,904,178	-		BWI76_RS23500	0.76	+0.2
4,904,178	-		BWI76_RS23500	0.76	-1.0
4,904,178	-		BWI76_RS23500	0.76	-2.0
4,904,178	-		BWI76_RS23500	0.76	-3.3
4,904,178	-		BWI76_RS23500	0.76	-2.2
4,904,178	-		BWI76_RS23500	0.76	-2.6
4,904,178	-		BWI76_RS23500	0.76	-2.4
4,904,181	+		BWI76_RS23500	0.76	-3.6
4,904,185	+		BWI76_RS23500	0.77	-0.1
4,904,185	+		BWI76_RS23500	0.77	-1.1
4,904,190	+		BWI76_RS23500	0.77	-0.4
4,904,190	+		BWI76_RS23500	0.77	-0.7
4,904,190	+		BWI76_RS23500	0.77	-3.2
4,904,190	+		BWI76_RS23500	0.77	-1.5
4,904,190	+		BWI76_RS23500	0.77	-0.7
4,904,193	-		BWI76_RS23500	0.78	-3.5
4,904,193	-		BWI76_RS23500	0.78	-2.1
4,904,193	-		BWI76_RS23500	0.78	-4.2
4,904,193	-		BWI76_RS23500	0.78	-2.4
4,904,196	+		BWI76_RS23500	0.78	-4.0
4,904,199	-		BWI76_RS23500	0.79	-4.4
4,904,201	+		BWI76_RS23500	0.79	-2.2
4,904,204	+		BWI76_RS23500	0.79	-2.4
4,904,204	-		BWI76_RS23500	0.79	-3.8
4,904,211	+		BWI76_RS23500	0.80	+0.9
4,904,218	+		BWI76_RS23500	0.81	-1.4
4,904,218	+		BWI76_RS23500	0.81	+2.8
4,904,218	+		BWI76_RS23500	0.81	+0.6
4,904,218	+		BWI76_RS23500	0.81	-4.2
4,904,218	+		BWI76_RS23500	0.81	-3.1
4,904,218	+		BWI76_RS23500	0.81	-2.3
4,904,218	+		BWI76_RS23500	0.81	+0.8
4,904,218	+		BWI76_RS23500	0.81	-2.0
4,904,218	+		BWI76_RS23500	0.81	-3.3
4,904,218	+		BWI76_RS23500	0.81	-2.5
4,904,220	+		BWI76_RS23500	0.82	+0.8
4,904,220	+		BWI76_RS23500	0.82	-1.4
4,904,226	-		BWI76_RS23500	0.82	-1.6
4,904,226	-		BWI76_RS23500	0.82	-0.4
4,904,226	-		BWI76_RS23500	0.82	-1.0
4,904,226	-		BWI76_RS23500	0.82	-0.4
4,904,226	-		BWI76_RS23500	0.82	-1.6
4,904,226	-		BWI76_RS23500	0.82	-2.9
4,904,226	-		BWI76_RS23500	0.82	+0.2
4,904,226	-		BWI76_RS23500	0.82	-0.9
4,904,226	-		BWI76_RS23500	0.82	-1.3
4,904,226	-		BWI76_RS23500	0.82	-0.7
4,904,226	-				-0.0
4,904,226	-		BWI76_RS23500	0.82	-1.1
4,904,226	-		BWI76_RS23500	0.82	-1.0
4,904,226	-		BWI76_RS23500	0.82	-1.3
4,904,226	-		BWI76_RS23500	0.82	-0.0
4,904,226	-		BWI76_RS23500	0.82	-0.8
4,904,226	-		BWI76_RS23500	0.82	-2.0
4,904,226	-		BWI76_RS23500	0.82	-3.2
4,904,226	-		BWI76_RS23500	0.82	-3.1
4,904,226	-		BWI76_RS23500	0.82	+0.0
4,904,226	-		BWI76_RS23500	0.82	-2.2
4,904,226	-		BWI76_RS23500	0.82	-1.1
4,904,226	-		BWI76_RS23500	0.82	+1.8
4,904,229	-		BWI76_RS23500	0.83	-1.8
4,904,229	-		BWI76_RS23500	0.83	-1.9
4,904,234	-		BWI76_RS23500	0.84	-0.9
4,904,234	-		BWI76_RS23500	0.84	-0.9
4,904,347	+				-3.7
4,904,347	+				-1.0
4,904,400	+				-1.1
4,904,400	+				+2.8
4,904,427	+				-1.6
4,904,427	+				+0.9
4,904,427	+				+0.4
4,904,427	+				-3.5
4,904,427	+				+0.1
4,904,427	+				+0.8
4,904,427	+				+0.7
4,904,427	+				-0.7
4,904,427	+				-2.6
4,904,427	+				-2.0
4,904,427	+				-0.4
4,904,427	+				-0.9
4,904,427	+				-4.2
4,904,427	+				-0.7
4,904,428	+				-0.3
4,904,435	-				-1.4
4,904,435	-				-1.4
4,904,435	-				-1.6
4,904,435	-				-0.2
4,904,435	-				-0.5
4,904,435	-				+0.1
4,904,435	-				-0.4
4,904,435	-				-0.5
4,904,435	-				-1.0
4,904,435	-				-0.5
4,904,435	-				-1.1
4,904,435	-				-1.6
4,904,435	-				-1.2
4,904,435	-				-0.2
4,904,435	-				-0.5
4,904,435	-				-1.5
4,904,435	-				-0.9
4,904,435	-				-1.2
4,904,435	-				-2.5
4,904,435	-				-0.2
4,904,435	-				-3.0
4,904,435	-				-1.2
4,904,435	-				-1.0
4,904,435	-				-1.4
4,904,435	-				-0.1
4,904,435	-				-3.0
4,904,435	-				-2.6
4,904,435	-				-0.1
4,904,436	-				-0.6
4,904,436	-				-2.2
4,904,436	-				-0.4
4,904,452	+				+0.8
4,904,453	+				-2.1
4,904,456	-				-0.9
4,904,460	-				+0.8
4,904,462	-				-0.4
4,904,462	-				-2.0
4,904,496	+				-2.7
4,904,498	+				-0.5
4,904,498	+				-0.5
4,904,499	+				-1.1
4,904,503	+				+0.7
4,904,503	+				-1.3
4,904,503	+				-3.6
4,904,504	+				-0.3
4,904,504	-				-0.6
4,904,504	-				+0.9
4,904,504	-				-0.6
4,904,504	-				-0.9
4,904,506	+				-0.7
4,904,506	-				-1.5
4,904,509	+				-0.9
4,904,511	-				-4.6
4,904,511	-				-2.5
4,904,512	-				-1.6
4,904,514	-				-5.3
4,904,518	+				-1.4
4,904,518	+				-1.6
4,904,518	+				-2.9
4,904,518	+				-0.7
4,904,518	+				-1.9
4,904,519	+				-1.4
4,904,519	+				-1.4
4,904,522	-				-2.9
4,904,522	-				-0.8
4,904,526	-				-2.7
4,904,526	-				-3.0
4,904,526	-				-2.5
4,904,526	-				-1.1
4,904,526	-				-1.9
4,904,526	-				-3.5
4,904,528	-				+0.2
4,904,529	-				-3.5
4,904,532	+				-1.4
4,904,540	-		BWI76_RS23505	0.11	-0.3
4,904,559	+		BWI76_RS23505	0.14	-0.6
4,904,560	+		BWI76_RS23505	0.14	-0.0
4,904,578	+		BWI76_RS23505	0.17	-0.8
4,904,578	+		BWI76_RS23505	0.17	-1.6
4,904,578	+		BWI76_RS23505	0.17	-1.5
4,904,578	+		BWI76_RS23505	0.17	-0.7
4,904,578	+		BWI76_RS23505	0.17	-1.3
4,904,578	+		BWI76_RS23505	0.17	-1.0
4,904,606	+		BWI76_RS23505	0.22	-1.8
4,904,606	+		BWI76_RS23505	0.22	-2.6
4,904,606	+		BWI76_RS23505	0.22	-1.8
4,904,606	+		BWI76_RS23505	0.22	-2.3
4,904,614	-		BWI76_RS23505	0.23	+0.4
4,904,614	-		BWI76_RS23505	0.23	-2.7
4,904,614	-		BWI76_RS23505	0.23	-0.2
4,904,614	-		BWI76_RS23505	0.23	-0.4
4,904,614	-		BWI76_RS23505	0.23	+0.4
4,904,621	-		BWI76_RS23505	0.24	-1.1
4,904,669	+		BWI76_RS23505	0.32	-0.9
4,904,671	-		BWI76_RS23505	0.33	-2.8
4,904,702	+		BWI76_RS23505	0.38	-0.8
4,904,708	+		BWI76_RS23505	0.39	-2.6
4,904,730	-		BWI76_RS23505	0.42	-2.2
4,904,738	-		BWI76_RS23505	0.44	-1.7
4,904,747	+		BWI76_RS23505	0.45	-2.0
4,904,762	-		BWI76_RS23505	0.48	-0.2
4,904,770	+		BWI76_RS23505	0.49	-1.0
4,904,794	+		BWI76_RS23505	0.53	-3.0
4,904,794	+		BWI76_RS23505	0.53	-3.3
4,904,807	-		BWI76_RS23505	0.55	-1.0
4,904,814	-		BWI76_RS23505	0.56	-2.5
4,904,814	-		BWI76_RS23505	0.56	-3.1
4,904,816	+		BWI76_RS23505	0.57	+0.6
4,904,887	-		BWI76_RS23505	0.68	-0.6
4,904,903	-		BWI76_RS23505	0.71	-2.5
4,904,908	+		BWI76_RS23505	0.72	-2.7
4,904,908	+		BWI76_RS23505	0.72	+1.9
4,904,908	+		BWI76_RS23505	0.72	-2.1
4,904,908	+		BWI76_RS23505	0.72	-1.8
4,904,908	+		BWI76_RS23505	0.72	-0.5
4,904,908	+		BWI76_RS23505	0.72	-2.8
4,904,908	-		BWI76_RS23505	0.72	-0.5
4,904,910	+		BWI76_RS23505	0.72	-1.3
4,904,910	+		BWI76_RS23505	0.72	-0.8
4,904,910	+		BWI76_RS23505	0.72	-1.6
4,904,910	+		BWI76_RS23505	0.72	-1.0
4,904,910	+		BWI76_RS23505	0.72	-0.6
4,904,911	+		BWI76_RS23505	0.72	-0.3
4,904,916	-		BWI76_RS23505	0.73	-3.3
4,904,917	-		BWI76_RS23505	0.73	-2.9
4,904,917	-		BWI76_RS23505	0.73	-3.4
4,904,917	-		BWI76_RS23505	0.73	+0.7
4,904,917	-		BWI76_RS23505	0.73	-1.7
4,904,917	-		BWI76_RS23505	0.73	+0.2
4,904,917	-		BWI76_RS23505	0.73	-0.3
4,904,917	-		BWI76_RS23505	0.73	-0.2
4,904,919	-		BWI76_RS23505	0.74	-0.9
4,904,919	-		BWI76_RS23505	0.74	-3.1
4,904,929	+		BWI76_RS23505	0.75	-1.4
4,904,932	-		BWI76_RS23505	0.76	-0.8
4,904,938	-		BWI76_RS23505	0.77	-1.9
4,904,951	+		BWI76_RS23505	0.79	-0.4
4,904,951	+		BWI76_RS23505	0.79	-1.5
4,904,951	+		BWI76_RS23505	0.79	-1.9
4,904,951	+		BWI76_RS23505	0.79	-1.3
4,904,951	+		BWI76_RS23505	0.79	-2.1
4,904,951	+		BWI76_RS23505	0.79	-0.7
4,904,951	+		BWI76_RS23505	0.79	-1.1
4,904,955	+		BWI76_RS23505	0.80	-0.3
4,904,957	-		BWI76_RS23505	0.80	-3.0
4,904,959	-		BWI76_RS23505	0.80	-0.6
4,904,959	-		BWI76_RS23505	0.80	-1.2
4,904,959	-		BWI76_RS23505	0.80	-2.5
4,904,959	-		BWI76_RS23505	0.80	-0.4
4,904,959	-		BWI76_RS23505	0.80	-0.9
4,904,959	-		BWI76_RS23505	0.80	-2.4
4,904,959	-		BWI76_RS23505	0.80	-2.5
4,904,959	-		BWI76_RS23505	0.80	-2.0
4,904,959	-		BWI76_RS23505	0.80	-0.5
4,904,989	-		BWI76_RS23505	0.85	-1.1
4,904,989	-		BWI76_RS23505	0.85	-1.3
4,905,002	+		BWI76_RS23505	0.87	-2.2
4,905,004	+		BWI76_RS23505	0.88	-0.1
4,905,007	+		BWI76_RS23505	0.88	-1.4
4,905,010	-		BWI76_RS23505	0.89	+1.0
4,905,010	-		BWI76_RS23505	0.89	-2.4
4,905,052	-				-0.8
4,905,054	-				-1.4
4,905,056	+				-0.2
4,905,059	+				-1.9
4,905,129	-				-0.2
4,905,146	-				+0.1
4,905,146	-				-0.7
4,905,153	+				-1.9
4,905,156	-				-0.5
4,905,161	+				-1.8
4,905,163	+				-0.7
4,905,163	+				-0.4
4,905,166	-				+0.5
4,905,166	-				-0.3
4,905,169	-				-1.0
4,905,169	-				-2.6
4,905,174	+				+0.0
4,905,174	-				-1.8
4,905,174	-				-1.7
4,905,183	+				-0.1
4,905,183	+				+0.0
4,905,191	-				-0.3
4,905,208	+				-0.6
4,905,245	+				-3.5
4,905,253	-				-1.4
4,905,286	+				-1.3
4,905,294	-				-2.0
4,905,308	+				-0.2
4,905,308	+				-0.6
4,905,326	-				-0.9
4,905,338	-				-3.2