Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23435

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
4,888,521	+		BWI76_RS23430	0.47	+0.2
4,888,529	-		BWI76_RS23430	0.48	-1.0
4,888,638	+		BWI76_RS23430	0.62	+0.3
4,888,693	+		BWI76_RS23430	0.69	-0.1
4,888,711	-		BWI76_RS23430	0.72	+1.4
4,888,714	-		BWI76_RS23430	0.72	+0.3
4,888,846	+		BWI76_RS23430	0.90	+2.5
4,888,846	+		BWI76_RS23430	0.90	+0.9
4,888,854	-				-2.6
4,888,854	-				-3.6
4,888,854	-				+0.4
4,888,854	-				-0.4
4,888,857	+				-0.2
4,888,891	+				-1.2
4,888,953	+				+0.2
4,888,962	-				+2.1
4,888,969	+				-0.2
4,888,977	-				+2.3
4,888,995	+				-1.9
4,889,002	+				+0.0
4,889,003	-				-2.1
4,889,009	+				-0.2
4,889,018	-				+1.2
4,889,027	-				+1.1
4,889,028	-				+1.4
4,889,075	+				+0.4
4,889,075	+				+0.1
4,889,083	-				+0.1
4,889,432	+				-1.0
4,889,440	-				-0.4
4,889,470	+				+3.0
4,889,882	-		BWI76_RS23435	0.35	+0.9
4,890,157	+		BWI76_RS23435	0.59	+0.4
4,890,213	+		BWI76_RS23435	0.63	+1.3
4,890,223	+		BWI76_RS23435	0.64	-0.6
4,890,223	+		BWI76_RS23435	0.64	-0.1
4,890,376	-		BWI76_RS23435	0.77	-0.3
4,890,414	-		BWI76_RS23435	0.80	+0.8
4,890,428	+		BWI76_RS23435	0.82	+1.0
4,890,487	+		BWI76_RS23435	0.87	-0.4
4,890,495	-		BWI76_RS23435	0.87	+0.7
4,890,525	+		BWI76_RS23435	0.90	+0.3
4,890,623	-				+0.4
4,890,679	+				+0.3
4,890,761	+				-0.9
4,890,887	+				-1.5
4,890,887	+				+0.5
4,890,895	-				-1.1
4,890,895	-				+1.4
4,890,895	-				-0.1
4,890,895	-				+0.5
4,890,990	+		BWI76_RS23440	0.17	+0.0
4,890,990	+		BWI76_RS23440	0.17	-0.8
4,890,991	+		BWI76_RS23440	0.17	-1.5
4,890,991	+		BWI76_RS23440	0.17	-0.3
4,890,991	+		BWI76_RS23440	0.17	+1.2
4,890,991	+		BWI76_RS23440	0.17	+0.5
4,890,991	+				+1.8
4,890,991	+		BWI76_RS23440	0.17	-1.4
4,890,998	-		BWI76_RS23440	0.18	+1.5
4,890,999	-		BWI76_RS23440	0.18	+0.1
4,890,999	-		BWI76_RS23440	0.18	+1.0
4,890,999	-		BWI76_RS23440	0.18	+0.5
4,890,999	-		BWI76_RS23440	0.18	-0.7
4,890,999	-		BWI76_RS23440	0.18	+1.0
4,890,999	-		BWI76_RS23440	0.18	-1.3
4,890,999	-		BWI76_RS23440	0.18	+1.5
4,890,999	-		BWI76_RS23440	0.18	+1.6
4,891,006	-		BWI76_RS23440	0.19	+1.6
4,891,018	+		BWI76_RS23440	0.21	-0.8
4,891,033	+		BWI76_RS23440	0.23	+1.1
4,891,033	+		BWI76_RS23440	0.23	-0.1
4,891,050	-		BWI76_RS23440	0.25	-1.6
4,891,050	-		BWI76_RS23440	0.25	+1.2
4,891,065	-		BWI76_RS23440	0.27	-2.3
4,891,075	-		BWI76_RS23440	0.29	-0.2
4,891,090	-		BWI76_RS23440	0.31	+0.6
4,891,119	+		BWI76_RS23440	0.35	-1.5
4,891,192	+		BWI76_RS23440	0.46	-1.3
4,891,201	-		BWI76_RS23440	0.47	+0.8
4,891,204	+		BWI76_RS23440	0.47	+0.9
4,891,222	-		BWI76_RS23440	0.50	+2.1
4,891,241	-		BWI76_RS23440	0.53	-0.4
4,891,292	+		BWI76_RS23440	0.60	-1.4
4,891,292	+		BWI76_RS23440	0.60	+2.8
4,891,292	+		BWI76_RS23440	0.60	-0.4
4,891,292	+		BWI76_RS23440	0.60	-0.0
4,891,292	+		BWI76_RS23440	0.60	+0.6
4,891,292	+		BWI76_RS23440	0.60	+0.8
4,891,292	+		BWI76_RS23440	0.60	-0.8
4,891,300	-		BWI76_RS23440	0.61	-1.0
4,891,300	-		BWI76_RS23440	0.61	-0.1
4,891,300	-		BWI76_RS23440	0.61	-0.3
4,891,300	-		BWI76_RS23440	0.61	-0.0
4,891,303	+		BWI76_RS23440	0.61	-0.5
4,891,315	+		BWI76_RS23440	0.63	+0.8
4,891,323	-				-0.5
4,891,323	-		BWI76_RS23440	0.64	+3.0
4,891,325	-		BWI76_RS23440	0.65	-3.6
4,891,327	+		BWI76_RS23440	0.65	-1.1
4,891,335	-		BWI76_RS23440	0.66	+0.6
4,891,335	-		BWI76_RS23440	0.66	-0.8
4,891,340	+		BWI76_RS23440	0.67	-0.8
4,891,373	+		BWI76_RS23440	0.72	+0.5
4,891,383	+		BWI76_RS23440	0.73	-1.0
4,891,408	+		BWI76_RS23440	0.77	+2.1
4,891,416	-		BWI76_RS23440	0.78	+0.4
4,891,416	-		BWI76_RS23440	0.78	-0.8
4,891,434	-		BWI76_RS23440	0.80	-0.0
4,891,452	+		BWI76_RS23440	0.83	-2.7
4,891,452	+		BWI76_RS23440	0.83	-0.9
4,891,452	+		BWI76_RS23440	0.83	-2.0
4,891,452	+		BWI76_RS23440	0.83	+0.5
4,891,452	+		BWI76_RS23440	0.83	-5.8
4,891,452	+		BWI76_RS23440	0.83	-1.0
4,891,452	+		BWI76_RS23440	0.83	+0.6
4,891,460	-		BWI76_RS23440	0.84	+0.1
4,891,460	-		BWI76_RS23440	0.84	-0.6
4,891,460	-		BWI76_RS23440	0.84	-2.9
4,891,460	-		BWI76_RS23440	0.84	-0.1
4,891,460	-		BWI76_RS23440	0.84	+0.2
4,891,460	-		BWI76_RS23440	0.84	-0.4
4,891,460	-		BWI76_RS23440	0.84	-1.8
4,891,460	-		BWI76_RS23440	0.84	-1.0
4,891,460	-		BWI76_RS23440	0.84	-0.1
4,891,465	-		BWI76_RS23440	0.85	+0.1
4,891,470	-		BWI76_RS23440	0.85	-0.7
4,891,538	+				+0.1
4,891,538	+				-0.4
4,891,540	+				-0.1
4,891,540	+				+1.8
4,891,540	+				-1.3
4,891,540	+				-1.7
4,891,540	+				-2.1
4,891,540	+				-0.2
4,891,540	+				+0.8
4,891,540	+				-1.0
4,891,540	+				-0.5
4,891,540	+				+0.3
4,891,540	+				-1.6
4,891,540	+				-0.6
4,891,540	+				-2.2
4,891,540	+				-0.0
4,891,540	+				-1.1
4,891,540	+				-0.2
4,891,540	+				-2.2
4,891,540	+				+0.9
4,891,546	-				+0.5
4,891,546	-				+1.4
4,891,546	-				-0.6
4,891,548	-				-3.7
4,891,548	-				-2.4
4,891,548	-				-2.2
4,891,548	-				+0.1
4,891,548	-				-1.2
4,891,548	-				-0.6
4,891,548	-				-0.0
4,891,548	-				-3.8
4,891,548	-				+1.0
4,891,548	-				-0.5
4,891,548	-				-0.4
4,891,548	-				-0.0
4,891,548	-				-0.8
4,891,548	-				-1.6
4,891,548	-				-0.1
4,891,548	-				+0.8
4,891,548	-				-0.5
4,891,548	-				-1.4
4,891,549	+				-1.3
4,891,549	+				-3.2
4,891,549	+				-0.7
4,891,549	+				-1.7
4,891,549	+				-0.9
4,891,549	+				+1.1
4,891,550	+				-0.5
4,891,550	+				-1.1
4,891,550	+				-0.1
4,891,550	+				+1.1
4,891,550	+				-2.4
4,891,550	+				+1.1
4,891,550	+				+1.4
4,891,550	+				-1.9
4,891,550	+				+4.4
4,891,557	-				-0.2
4,891,557	-				-2.0
4,891,558	-				+0.2
4,891,558	-				-1.7
4,891,558	-				-1.4
4,891,558	-				+3.2
4,891,558	-				+0.5
4,891,558	-				-1.2
4,891,558	-				+0.4
4,891,558	-				-2.3
4,891,558	-				+4.8
4,891,558	-				-1.0
4,891,571	+				+1.2