Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22905 and BWI76_RS22910 are separated by 97 nucleotides BWI76_RS22910 and BWI76_RS22915 are separated by 220 nucleotides
BWI76_RS22905: BWI76_RS22905 - ATPase AAA, at 4,781,106 to 4,783,049
_RS22905
BWI76_RS22910: BWI76_RS22910 - flap endonuclease Xni, at 4,783,147 to 4,783,902
_RS22910
BWI76_RS22915: BWI76_RS22915 - L-fuculose phosphate aldolase (EC 4.1.2.17) (from data) , at 4,784,123 to 4,784,770
_RS22915
Position (kb)
4783
4784 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4782.193 kb on + strand, within BWI76_RS22905 at 4782.368 kb on + strand, within BWI76_RS22905 at 4782.484 kb on - strand at 4782.554 kb on + strand, within BWI76_RS22905 at 4782.653 kb on - strand, within BWI76_RS22905 at 4782.655 kb on - strand, within BWI76_RS22905 at 4782.666 kb on - strand, within BWI76_RS22905 at 4782.855 kb on + strand at 4782.855 kb on + strand at 4783.183 kb on - strand at 4783.241 kb on + strand, within BWI76_RS22910 at 4783.414 kb on - strand, within BWI76_RS22910 at 4783.414 kb on - strand, within BWI76_RS22910 at 4783.553 kb on - strand, within BWI76_RS22910 at 4783.673 kb on + strand, within BWI76_RS22910 at 4783.681 kb on - strand, within BWI76_RS22910 at 4783.819 kb on + strand, within BWI76_RS22910 at 4784.108 kb on + strand at 4784.356 kb on + strand, within BWI76_RS22915 at 4784.409 kb on - strand, within BWI76_RS22915 at 4784.409 kb on - strand, within BWI76_RS22915 at 4784.419 kb on - strand, within BWI76_RS22915 at 4784.495 kb on + strand, within BWI76_RS22915 at 4784.512 kb on + strand at 4784.558 kb on + strand, within BWI76_RS22915 at 4784.605 kb on - strand, within BWI76_RS22915 at 4784.605 kb on - strand, within BWI76_RS22915 at 4784.624 kb on - strand, within BWI76_RS22915 at 4784.641 kb on + strand, within BWI76_RS22915 at 4784.651 kb on + strand, within BWI76_RS22915 at 4784.664 kb on - strand, within BWI76_RS22915 at 4784.664 kb on - strand, within BWI76_RS22915 at 4784.670 kb on - strand, within BWI76_RS22915 at 4784.684 kb on - strand, within BWI76_RS22915 at 4784.684 kb on - strand, within BWI76_RS22915 at 4784.691 kb on + strand, within BWI76_RS22915 at 4784.699 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.704 kb on - strand, within BWI76_RS22915 at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.709 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.730 kb on - strand at 4784.732 kb on + strand at 4784.740 kb on - strand at 4784.740 kb on - strand at 4784.740 kb on - strand at 4784.753 kb on - strand at 4784.762 kb on - strand at 4784.762 kb on - strand at 4784.762 kb on - strand at 4784.763 kb on - strand at 4784.763 kb on - strand at 4784.763 kb on - strand at 4784.767 kb on - strand at 4784.794 kb on - strand at 4784.827 kb on - strand at 4784.835 kb on + strand at 4784.835 kb on + strand at 4784.837 kb on + strand at 4784.843 kb on - strand at 4784.866 kb on - strand at 4784.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 4,782,193 + BWI76_RS22905 0.56 +2.2 4,782,368 + BWI76_RS22905 0.65 -1.9 4,782,484 - -0.0 4,782,554 + BWI76_RS22905 0.74 +0.5 4,782,653 - BWI76_RS22905 0.80 +0.9 4,782,655 - BWI76_RS22905 0.80 -1.1 4,782,666 - BWI76_RS22905 0.80 +0.6 4,782,855 + -0.6 4,782,855 + -0.7 4,783,183 - +1.5 4,783,241 + BWI76_RS22910 0.12 +0.6 4,783,414 - BWI76_RS22910 0.35 -1.6 4,783,414 - BWI76_RS22910 0.35 +1.2 4,783,553 - BWI76_RS22910 0.54 -0.0 4,783,673 + BWI76_RS22910 0.70 -1.4 4,783,681 - BWI76_RS22910 0.71 +0.3 4,783,819 + BWI76_RS22910 0.89 +1.4 4,784,108 + -0.8 4,784,356 + BWI76_RS22915 0.36 -1.2 4,784,409 - BWI76_RS22915 0.44 -0.2 4,784,409 - BWI76_RS22915 0.44 -0.4 4,784,419 - BWI76_RS22915 0.46 +0.0 4,784,495 + BWI76_RS22915 0.57 +0.2 4,784,512 + +2.8 4,784,558 + BWI76_RS22915 0.67 -1.5 4,784,605 - BWI76_RS22915 0.74 -2.0 4,784,605 - BWI76_RS22915 0.74 -1.0 4,784,624 - BWI76_RS22915 0.77 -3.3 4,784,641 + BWI76_RS22915 0.80 -2.0 4,784,651 + BWI76_RS22915 0.81 -0.6 4,784,664 - BWI76_RS22915 0.83 +0.6 4,784,664 - BWI76_RS22915 0.83 -1.6 4,784,670 - BWI76_RS22915 0.84 -2.2 4,784,684 - BWI76_RS22915 0.87 -1.3 4,784,684 - BWI76_RS22915 0.87 -1.4 4,784,691 + BWI76_RS22915 0.88 -2.9 4,784,699 - BWI76_RS22915 0.89 -1.1 4,784,704 - BWI76_RS22915 0.90 -1.8 4,784,704 - BWI76_RS22915 0.90 -0.8 4,784,704 - BWI76_RS22915 0.90 -0.1 4,784,704 - BWI76_RS22915 0.90 +0.1 4,784,704 - BWI76_RS22915 0.90 -1.2 4,784,704 - BWI76_RS22915 0.90 -1.1 4,784,709 - +0.6 4,784,709 - -0.3 4,784,709 - -1.1 4,784,709 - -0.2 4,784,730 - -0.4 4,784,730 - -3.3 4,784,730 - -2.8 4,784,730 - -1.5 4,784,732 + -1.1 4,784,740 - +0.7 4,784,740 - -1.0 4,784,740 - -2.8 4,784,753 - -0.4 4,784,762 - -0.0 4,784,762 - -0.9 4,784,762 - -1.1 4,784,763 - -0.2 4,784,763 - -0.2 4,784,763 - +2.8 4,784,767 - -1.4 4,784,794 - +1.6 4,784,827 - -3.7 4,784,835 + -0.2 4,784,835 + +0.5 4,784,837 + +1.8 4,784,843 - +1.2 4,784,866 - -2.2 4,784,887 - -2.4
Or see this region's nucleotide sequence