Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22910

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22905 and BWI76_RS22910 are separated by 97 nucleotidesBWI76_RS22910 and BWI76_RS22915 are separated by 220 nucleotides BWI76_RS22905: BWI76_RS22905 - ATPase AAA, at 4,781,106 to 4,783,049 _RS22905 BWI76_RS22910: BWI76_RS22910 - flap endonuclease Xni, at 4,783,147 to 4,783,902 _RS22910 BWI76_RS22915: BWI76_RS22915 - L-fuculose phosphate aldolase (EC 4.1.2.17) (from data), at 4,784,123 to 4,784,770 _RS22915 Position (kb) 4783 4784Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4782.193 kb on + strand, within BWI76_RS22905at 4782.368 kb on + strand, within BWI76_RS22905at 4782.484 kb on - strandat 4782.554 kb on + strand, within BWI76_RS22905at 4782.653 kb on - strand, within BWI76_RS22905at 4782.655 kb on - strand, within BWI76_RS22905at 4782.666 kb on - strand, within BWI76_RS22905at 4782.855 kb on + strandat 4782.855 kb on + strandat 4783.183 kb on - strandat 4783.241 kb on + strand, within BWI76_RS22910at 4783.414 kb on - strand, within BWI76_RS22910at 4783.414 kb on - strand, within BWI76_RS22910at 4783.553 kb on - strand, within BWI76_RS22910at 4783.673 kb on + strand, within BWI76_RS22910at 4783.681 kb on - strand, within BWI76_RS22910at 4783.819 kb on + strand, within BWI76_RS22910at 4784.108 kb on + strandat 4784.356 kb on + strand, within BWI76_RS22915at 4784.409 kb on - strand, within BWI76_RS22915at 4784.409 kb on - strand, within BWI76_RS22915at 4784.419 kb on - strand, within BWI76_RS22915at 4784.495 kb on + strand, within BWI76_RS22915at 4784.512 kb on + strandat 4784.558 kb on + strand, within BWI76_RS22915at 4784.605 kb on - strand, within BWI76_RS22915at 4784.605 kb on - strand, within BWI76_RS22915at 4784.624 kb on - strand, within BWI76_RS22915at 4784.641 kb on + strand, within BWI76_RS22915at 4784.651 kb on + strand, within BWI76_RS22915at 4784.664 kb on - strand, within BWI76_RS22915at 4784.664 kb on - strand, within BWI76_RS22915at 4784.670 kb on - strand, within BWI76_RS22915at 4784.684 kb on - strand, within BWI76_RS22915at 4784.684 kb on - strand, within BWI76_RS22915at 4784.691 kb on + strand, within BWI76_RS22915at 4784.699 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.704 kb on - strand, within BWI76_RS22915at 4784.709 kb on - strandat 4784.709 kb on - strandat 4784.709 kb on - strandat 4784.709 kb on - strandat 4784.730 kb on - strandat 4784.730 kb on - strandat 4784.730 kb on - strandat 4784.730 kb on - strandat 4784.732 kb on + strandat 4784.740 kb on - strandat 4784.740 kb on - strandat 4784.740 kb on - strandat 4784.753 kb on - strandat 4784.762 kb on - strandat 4784.762 kb on - strandat 4784.762 kb on - strandat 4784.763 kb on - strandat 4784.763 kb on - strandat 4784.763 kb on - strandat 4784.767 kb on - strandat 4784.794 kb on - strandat 4784.827 kb on - strandat 4784.835 kb on + strandat 4784.835 kb on + strandat 4784.837 kb on + strandat 4784.843 kb on - strandat 4784.866 kb on - strandat 4784.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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4,782,193 + BWI76_RS22905 0.56 +2.2
4,782,368 + BWI76_RS22905 0.65 -1.9
4,782,484 - -0.0
4,782,554 + BWI76_RS22905 0.74 +0.5
4,782,653 - BWI76_RS22905 0.80 +0.9
4,782,655 - BWI76_RS22905 0.80 -1.1
4,782,666 - BWI76_RS22905 0.80 +0.6
4,782,855 + -0.6
4,782,855 + -0.7
4,783,183 - +1.5
4,783,241 + BWI76_RS22910 0.12 +0.6
4,783,414 - BWI76_RS22910 0.35 -1.6
4,783,414 - BWI76_RS22910 0.35 +1.2
4,783,553 - BWI76_RS22910 0.54 -0.0
4,783,673 + BWI76_RS22910 0.70 -1.4
4,783,681 - BWI76_RS22910 0.71 +0.3
4,783,819 + BWI76_RS22910 0.89 +1.4
4,784,108 + -0.8
4,784,356 + BWI76_RS22915 0.36 -1.2
4,784,409 - BWI76_RS22915 0.44 -0.2
4,784,409 - BWI76_RS22915 0.44 -0.4
4,784,419 - BWI76_RS22915 0.46 +0.0
4,784,495 + BWI76_RS22915 0.57 +0.2
4,784,512 + +2.8
4,784,558 + BWI76_RS22915 0.67 -1.5
4,784,605 - BWI76_RS22915 0.74 -2.0
4,784,605 - BWI76_RS22915 0.74 -1.0
4,784,624 - BWI76_RS22915 0.77 -3.3
4,784,641 + BWI76_RS22915 0.80 -2.0
4,784,651 + BWI76_RS22915 0.81 -0.6
4,784,664 - BWI76_RS22915 0.83 +0.6
4,784,664 - BWI76_RS22915 0.83 -1.6
4,784,670 - BWI76_RS22915 0.84 -2.2
4,784,684 - BWI76_RS22915 0.87 -1.3
4,784,684 - BWI76_RS22915 0.87 -1.4
4,784,691 + BWI76_RS22915 0.88 -2.9
4,784,699 - BWI76_RS22915 0.89 -1.1
4,784,704 - BWI76_RS22915 0.90 -1.8
4,784,704 - BWI76_RS22915 0.90 -0.8
4,784,704 - BWI76_RS22915 0.90 -0.1
4,784,704 - BWI76_RS22915 0.90 +0.1
4,784,704 - BWI76_RS22915 0.90 -1.2
4,784,704 - BWI76_RS22915 0.90 -1.1
4,784,709 - +0.6
4,784,709 - -0.3
4,784,709 - -1.1
4,784,709 - -0.2
4,784,730 - -0.4
4,784,730 - -3.3
4,784,730 - -2.8
4,784,730 - -1.5
4,784,732 + -1.1
4,784,740 - +0.7
4,784,740 - -1.0
4,784,740 - -2.8
4,784,753 - -0.4
4,784,762 - -0.0
4,784,762 - -0.9
4,784,762 - -1.1
4,784,763 - -0.2
4,784,763 - -0.2
4,784,763 - +2.8
4,784,767 - -1.4
4,784,794 - +1.6
4,784,827 - -3.7
4,784,835 + -0.2
4,784,835 + +0.5
4,784,837 + +1.8
4,784,843 - +1.2
4,784,866 - -2.2
4,784,887 - -2.4

Or see this region's nucleotide sequence