Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22495

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
4,688,934	+		BWI76_RS22485	0.72	-1.7
4,688,934	+		BWI76_RS22485	0.72	+0.0
4,688,934	+		BWI76_RS22485	0.72	+0.8
4,688,934	+		BWI76_RS22485	0.72	-1.1
4,688,934	+		BWI76_RS22485	0.72	+1.2
4,688,942	-		BWI76_RS22485	0.74	-0.6
4,688,959	+		BWI76_RS22485	0.79	+0.2
4,688,959	+		BWI76_RS22485	0.79	-1.4
4,688,968	-		BWI76_RS22485	0.82	-0.2
4,689,027	+				-2.2
4,689,034	-				+2.8
4,689,034	-				+2.8
4,689,034	-				+2.8
4,689,048	+				-2.5
4,689,048	+				-1.3
4,689,048	+				-3.3
4,689,053	+				+0.8
4,689,056	-				+2.8
4,689,056	-				+1.2
4,689,056	-				+2.8
4,689,056	-				-0.2
4,689,058	+				+0.2
4,689,067	+				+0.5
4,689,239	+				-1.9
4,689,242	-				+0.2
4,689,244	+				+0.8
4,689,244	+				+0.2
4,689,244	+				+0.8
4,689,244	+				+0.2
4,689,244	+				-2.6
4,689,247	-				-0.5
4,689,249	+				+1.6
4,689,258	+				-2.4
4,689,272	+		BWI76_RS22490	0.10	-0.5
4,689,272	+		BWI76_RS22490	0.10	-0.3
4,689,272	+		BWI76_RS22490	0.10	-1.6
4,689,272	+		BWI76_RS22490	0.10	-1.1
4,689,297	-		BWI76_RS22490	0.14	+2.8
4,689,300	+		BWI76_RS22490	0.14	-2.1
4,689,300	+		BWI76_RS22490	0.14	+0.8
4,689,300	+		BWI76_RS22490	0.14	-0.5
4,689,300	+		BWI76_RS22490	0.14	-2.3
4,689,308	-		BWI76_RS22490	0.15	+0.0
4,689,308	-		BWI76_RS22490	0.15	+0.8
4,689,414	+		BWI76_RS22490	0.29	+0.8
4,689,416	+		BWI76_RS22490	0.30	-2.3
4,689,416	+		BWI76_RS22490	0.30	-1.5
4,689,422	-		BWI76_RS22490	0.30	-2.2
4,689,424	-		BWI76_RS22490	0.31	-0.0
4,689,424	-		BWI76_RS22490	0.31	+0.2
4,689,424	-		BWI76_RS22490	0.31	-0.3
4,689,434	+		BWI76_RS22490	0.32	-2.3
4,689,442	-		BWI76_RS22490	0.33	-1.3
4,689,516	-		BWI76_RS22490	0.43	+0.8
4,689,542	+		BWI76_RS22490	0.47	-0.5
4,689,542	+		BWI76_RS22490	0.47	-1.7
4,689,577	-		BWI76_RS22490	0.51	+0.3
4,689,577	-		BWI76_RS22490	0.51	+2.8
4,689,577	-		BWI76_RS22490	0.51	-0.6
4,689,577	-		BWI76_RS22490	0.51	+2.8
4,689,710	-		BWI76_RS22490	0.69	+2.8
4,689,715	+		BWI76_RS22490	0.70	+2.8
4,689,715	+		BWI76_RS22490	0.70	+0.8
4,689,723	-		BWI76_RS22490	0.71	+2.8
4,689,723	-		BWI76_RS22490	0.71	+2.2
4,689,723	-		BWI76_RS22490	0.71	-1.3
4,689,723	-		BWI76_RS22490	0.71	+1.8
4,689,723	-		BWI76_RS22490	0.71	-1.3
4,689,723	-		BWI76_RS22490	0.71	-1.0
4,689,723	-		BWI76_RS22490	0.71	-0.6
4,689,723	-		BWI76_RS22490	0.71	+0.5
4,689,768	+		BWI76_RS22490	0.77	-1.8
4,689,773	+		BWI76_RS22490	0.78	-0.6
4,689,776	-		BWI76_RS22490	0.78	-3.2
4,689,781	-		BWI76_RS22490	0.79	+3.2
4,689,781	-		BWI76_RS22490	0.79	-1.6
4,689,781	-		BWI76_RS22490	0.79	+2.8
4,689,781	-		BWI76_RS22490	0.79	+0.8
4,689,888	+				-1.2
4,689,897	+				-1.1
4,689,897	+				+1.8
4,689,897	-				+1.8
4,689,897	-				+2.8
4,689,905	-				-1.3
4,689,905	-				+1.3
4,689,962	+				+0.8
4,689,962	+				-1.3
4,689,963	+				-1.8
4,689,965	-				+1.8
4,689,965	-				-1.5
4,689,970	-				+1.8
4,689,983	+		BWI76_RS22495	0.11	-1.9
4,689,988	+		BWI76_RS22495	0.12	-2.2
4,689,996	-		BWI76_RS22495	0.14	+2.8
4,690,001	-		BWI76_RS22495	0.15	+1.8
4,690,006	-		BWI76_RS22495	0.16	-2.3
4,690,049	-		BWI76_RS22495	0.25	-2.1
4,690,049	-		BWI76_RS22495	0.25	+2.8
4,690,089	-		BWI76_RS22495	0.33	-1.6
4,690,092	+		BWI76_RS22495	0.33	-1.3
4,690,100	-		BWI76_RS22495	0.35	+2.8
4,690,115	+		BWI76_RS22495	0.38	-0.6
4,690,123	-		BWI76_RS22495	0.40	+1.2
4,690,125	+		BWI76_RS22495	0.40	+2.0
4,690,125	+		BWI76_RS22495	0.40	+0.0
4,690,125	+		BWI76_RS22495	0.40	+0.5
4,690,125	+		BWI76_RS22495	0.40	-0.9
4,690,125	+		BWI76_RS22495	0.40	+2.8
4,690,125	+		BWI76_RS22495	0.40	+2.8
4,690,125	+		BWI76_RS22495	0.40	-0.6
4,690,125	+		BWI76_RS22495	0.40	+0.5
4,690,125	+		BWI76_RS22495	0.40	+2.8
4,690,133	-		BWI76_RS22495	0.42	+0.5
4,690,133	-		BWI76_RS22495	0.42	-1.7
4,690,133	-		BWI76_RS22495	0.42	-0.6
4,690,133	-		BWI76_RS22495	0.42	+1.2
4,690,133	-		BWI76_RS22495	0.42	-3.4
4,690,133	-		BWI76_RS22495	0.42	-1.7
4,690,133	-		BWI76_RS22495	0.42	-1.4
4,690,133	-		BWI76_RS22495	0.42	+1.2
4,690,133	-		BWI76_RS22495	0.42	-0.5
4,690,133	-		BWI76_RS22495	0.42	+1.2
4,690,133	-		BWI76_RS22495	0.42	-1.6
4,690,168	+		BWI76_RS22495	0.49	-1.8
4,690,205	-		BWI76_RS22495	0.56	-3.1
4,690,212	+		BWI76_RS22495	0.58	-5.5
4,690,227	-		BWI76_RS22495	0.61	+0.5
4,690,249	+		BWI76_RS22495	0.65	+0.2
4,690,309	-		BWI76_RS22495	0.78	-1.4
4,690,336	+		BWI76_RS22495	0.83	+0.5
4,690,394	+				+0.2
4,690,394	+				-0.6
4,690,417	+				-0.6
4,690,425	-				+0.5
4,690,467	+				+0.0
4,690,470	-				-1.1
4,690,473	+				+1.2
4,690,473	+				-0.5
4,690,473	+				-2.4
4,690,473	+				-0.8
4,690,473	+				-0.9
4,690,473	+				-0.8
4,690,473	+				+0.3
4,690,473	+				+0.1
4,690,473	+				-0.5
4,690,473	+				+1.8
4,690,473	+				-0.8
4,690,473	+				+2.6
4,690,473	+				-1.6
4,690,473	+				-1.0
4,690,473	+				-0.3
4,690,473	+				-0.1
4,690,473	+				+0.8
4,690,473	+				-3.1
4,690,473	+				-1.3
4,690,473	+				+1.4
4,690,473	+				-2.6
4,690,473	+				-1.9
4,690,473	+				-2.6
4,690,473	+				-2.3
4,690,473	+				-3.8
4,690,473	+				-1.2
4,690,473	+				-1.4
4,690,473	+				-0.2
4,690,473	+				-0.6
4,690,473	+				-2.3
4,690,473	+				+0.0
4,690,473	+				-0.3
4,690,473	+				+0.0
4,690,473	+				+2.8
4,690,473	+				-4.0
4,690,473	+				-3.6
4,690,473	+				-1.7
4,690,473	+				-1.0
4,690,474	+				-2.9
4,690,474	+				-1.9
4,690,474	+				+2.8
4,690,481	-				+2.8
4,690,481	-				-0.3
4,690,481	-				+0.8
4,690,481	-				+0.2
4,690,481	-				+2.8
4,690,481	-				+0.8
4,690,481	-				+0.8
4,690,481	-				-0.6
4,690,481	-				+0.0
4,690,481	-				+2.8
4,690,481	-				-1.7
4,690,481	-				-1.6
4,690,481	-				-0.2
4,690,481	-				-1.7
4,690,481	-				-0.5
4,690,481	-				+0.8
4,690,481	-				+2.8
4,690,481	-				-1.0
4,690,481	-				+0.5
4,690,481	-				-1.5
4,690,481	-				-0.9
4,690,481	-				-1.3
4,690,510	+		BWI76_RS22500	0.10	-0.9
4,690,519	-		BWI76_RS22500	0.11	-0.2
4,690,521	+		BWI76_RS22500	0.11	-0.6
4,690,521	+		BWI76_RS22500	0.11	-3.5
4,690,529	+		BWI76_RS22500	0.12	-1.1
4,690,530	-		BWI76_RS22500	0.12	-0.9
4,690,532	+		BWI76_RS22500	0.12	+1.2
4,690,532	+		BWI76_RS22500	0.12	+0.6
4,690,532	+		BWI76_RS22500	0.12	-2.6
4,690,540	-		BWI76_RS22500	0.12	-1.1
4,690,540	-		BWI76_RS22500	0.12	+0.1
4,690,540	-		BWI76_RS22500	0.12	+0.0
4,690,540	-		BWI76_RS22500	0.12	+0.5
4,690,542	+		BWI76_RS22500	0.13	+1.5
4,690,552	+				+0.2
4,690,552	+		BWI76_RS22500	0.13	-1.6
4,690,562	+		BWI76_RS22500	0.14	-1.4
4,690,600	+		BWI76_RS22500	0.17	+0.2
4,690,603	-		BWI76_RS22500	0.17	-0.8
4,690,603	-		BWI76_RS22500	0.17	-2.1
4,690,610	+		BWI76_RS22500	0.18	-0.5
4,690,621	+		BWI76_RS22500	0.19	+1.2
4,690,621	+		BWI76_RS22500	0.19	-0.1
4,690,621	+		BWI76_RS22500	0.19	-0.9
4,690,621	+		BWI76_RS22500	0.19	-2.6
4,690,627	-		BWI76_RS22500	0.19	-0.7
4,690,627	-		BWI76_RS22500	0.19	-1.9
4,690,629	-		BWI76_RS22500	0.19	-1.8
4,690,629	-		BWI76_RS22500	0.19	+0.5
4,690,662	-		BWI76_RS22500	0.22	-0.2
4,690,690	+		BWI76_RS22500	0.24	-1.2
4,690,690	+		BWI76_RS22500	0.24	-1.1
4,690,694	-		BWI76_RS22500	0.25	-0.5
4,690,696	-		BWI76_RS22500	0.25	-2.7
4,690,698	-		BWI76_RS22500	0.25	-1.6
4,690,698	-		BWI76_RS22500	0.25	-1.3
4,690,698	-		BWI76_RS22500	0.25	-4.2
4,690,701	+		BWI76_RS22500	0.25	+0.5
4,690,701	-		BWI76_RS22500	0.25	+2.3
4,690,709	-		BWI76_RS22500	0.26	-1.5
4,690,711	+		BWI76_RS22500	0.26	-2.3
4,690,711	-		BWI76_RS22500	0.26	-1.4
4,690,753	-		BWI76_RS22500	0.29	+1.8
4,690,768	+		BWI76_RS22500	0.30	-0.8
4,690,769	+		BWI76_RS22500	0.30	-0.8
4,690,776	-		BWI76_RS22500	0.31	-2.1
4,690,776	-		BWI76_RS22500	0.31	+0.5
4,690,776	-		BWI76_RS22500	0.31	-1.1
4,690,781	+		BWI76_RS22500	0.31	+0.3
4,690,789	-		BWI76_RS22500	0.32	+0.2
4,690,797	-		BWI76_RS22500	0.33	-2.2
4,690,797	-		BWI76_RS22500	0.33	-0.6
4,690,804	-		BWI76_RS22500	0.33	-0.5
4,690,863	-		BWI76_RS22500	0.38	+1.2
4,690,868	+		BWI76_RS22500	0.38	-4.0
4,690,868	+		BWI76_RS22500	0.38	-0.2
4,690,871	-		BWI76_RS22500	0.39	-2.2
4,690,871	-		BWI76_RS22500	0.39	+0.5
4,690,871	-		BWI76_RS22500	0.39	-0.5
4,690,882	+		BWI76_RS22500	0.39	+2.8
4,690,890	-		BWI76_RS22500	0.40	-2.3
4,690,890	-		BWI76_RS22500	0.40	-0.8
4,690,890	-		BWI76_RS22500	0.40	+1.1
4,690,914	-		BWI76_RS22500	0.42	-1.1
4,690,947	-				+1.8
4,690,957	-		BWI76_RS22500	0.45	-1.1
4,690,957	-		BWI76_RS22500	0.45	-1.8
4,690,983	-		BWI76_RS22500	0.47	-2.2
4,691,010	+		BWI76_RS22500	0.50	-1.0
4,691,018	-		BWI76_RS22500	0.50	-0.3
4,691,020	+		BWI76_RS22500	0.50	-1.2
4,691,039	+				+2.8
4,691,058	+		BWI76_RS22500	0.53	+0.0
4,691,058	+		BWI76_RS22500	0.53	+0.8
4,691,088	-		BWI76_RS22500	0.56	-2.5
4,691,116	-		BWI76_RS22500	0.58	-0.3
4,691,143	-		BWI76_RS22500	0.60	-0.1
4,691,145	+		BWI76_RS22500	0.60	-2.3
4,691,145	+		BWI76_RS22500	0.60	-0.6
4,691,145	+		BWI76_RS22500	0.60	-0.2
4,691,145	+		BWI76_RS22500	0.60	-3.3
4,691,145	+		BWI76_RS22500	0.60	+0.9
4,691,151	-		BWI76_RS22500	0.61	+0.7
4,691,153	-		BWI76_RS22500	0.61	-2.5
4,691,153	-		BWI76_RS22500	0.61	-0.1
4,691,153	-		BWI76_RS22500	0.61	+0.2
4,691,153	-		BWI76_RS22500	0.61	-1.9
4,691,153	-		BWI76_RS22500	0.61	+0.7
4,691,153	-		BWI76_RS22500	0.61	-0.8
4,691,153	-		BWI76_RS22500	0.61	+0.8
4,691,153	-		BWI76_RS22500	0.61	-1.8
4,691,153	-		BWI76_RS22500	0.61	-1.3
4,691,153	-		BWI76_RS22500	0.61	-1.3
4,691,161	-		BWI76_RS22500	0.61	+1.1
4,691,214	-		BWI76_RS22500	0.66	+0.6
4,691,236	+		BWI76_RS22500	0.67	-0.0
4,691,270	-		BWI76_RS22500	0.70	+0.2
4,691,285	-		BWI76_RS22500	0.71	-0.2
4,691,287	-				-0.5
4,691,287	-		BWI76_RS22500	0.71	+0.8
4,691,292	+		BWI76_RS22500	0.72	-1.0
4,691,299	-		BWI76_RS22500	0.72	-1.1
4,691,308	-		BWI76_RS22500	0.73	-1.9
4,691,309	-		BWI76_RS22500	0.73	-3.4
4,691,320	-		BWI76_RS22500	0.74	+0.6
4,691,411	+		BWI76_RS22500	0.81	-1.6