Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22230 and BWI76_RS22235 are separated by 133 nucleotides BWI76_RS22235 and BWI76_RS22240 are separated by 68 nucleotides BWI76_RS22240 and BWI76_RS22245 overlap by 8 nucleotides BWI76_RS22245 and BWI76_RS22250 overlap by 38 nucleotides
BWI76_RS22230: BWI76_RS22230 - Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) <small>(from data)</small>, at 4,634,055 to 4,634,834
_RS22230
BWI76_RS22235: BWI76_RS22235 - transcriptional regulator GutM, at 4,634,968 to 4,635,327
_RS22235
BWI76_RS22240: BWI76_RS22240 - transcriptional regulator, at 4,635,396 to 4,636,169
_RS22240
BWI76_RS22245: BWI76_RS22245 - arabinose 5-phosphate isomerase GutQ, at 4,636,162 to 4,637,127
_RS22245
BWI76_RS22250: BWI76_RS22250 - nitric oxide reductase transcription regulator, at 4,637,090 to 4,638,634
_RS22250
Position (kb) 4635
4636
4637 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 4634.454 kb on - strand, within BWI76_RS22230 at 4634.508 kb on + strand, within BWI76_RS22230 at 4634.581 kb on + strand, within BWI76_RS22230 at 4634.664 kb on - strand, within BWI76_RS22230 at 4634.679 kb on - strand, within BWI76_RS22230 at 4635.182 kb on - strand, within BWI76_RS22235 at 4635.467 kb on - strand at 4635.495 kb on - strand, within BWI76_RS22240 at 4635.583 kb on - strand, within BWI76_RS22240 at 4635.705 kb on + strand, within BWI76_RS22240 at 4635.964 kb on - strand, within BWI76_RS22240 at 4636.176 kb on + strand at 4636.196 kb on + strand at 4636.356 kb on - strand, within BWI76_RS22245 at 4636.472 kb on - strand, within BWI76_RS22245 at 4636.513 kb on - strand, within BWI76_RS22245 at 4636.622 kb on + strand, within BWI76_RS22245 at 4636.623 kb on + strand, within BWI76_RS22245 at 4636.835 kb on - strand, within BWI76_RS22245 at 4636.847 kb on + strand, within BWI76_RS22245 at 4637.022 kb on - strand, within BWI76_RS22245 at 4637.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 4,634,454 - BWI76_RS22230 0.51 +0.8 4,634,508 + BWI76_RS22230 0.58 -0.4 4,634,581 + BWI76_RS22230 0.67 +0.8 4,634,664 - BWI76_RS22230 0.78 -1.1 4,634,679 - BWI76_RS22230 0.80 -0.4 4,635,182 - BWI76_RS22235 0.59 +0.8 4,635,467 - -2.1 4,635,495 - BWI76_RS22240 0.13 -5.2 4,635,583 - BWI76_RS22240 0.24 -4.8 4,635,705 + BWI76_RS22240 0.40 -4.2 4,635,964 - BWI76_RS22240 0.73 -7.5 4,636,176 + -0.2 4,636,196 + -1.3 4,636,356 - BWI76_RS22245 0.20 -1.1 4,636,472 - BWI76_RS22245 0.32 -0.1 4,636,513 - BWI76_RS22245 0.36 -3.2 4,636,622 + BWI76_RS22245 0.48 +0.0 4,636,623 + BWI76_RS22245 0.48 +0.1 4,636,835 - BWI76_RS22245 0.70 +0.9 4,636,847 + BWI76_RS22245 0.71 +0.6 4,637,022 - BWI76_RS22245 0.89 -2.3 4,637,163 - -0.2
Or see this region's nucleotide sequence