Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21775

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
4,549,733	-		BWI76_RS21765	0.84	-1.4
4,549,812	+				+0.2
4,549,819	+				+0.1
4,549,822	-				-0.8
4,550,019	-		BWI76_RS21770	0.11	-1.4
4,550,022	+		BWI76_RS21770	0.11	+0.5
4,550,029	-		BWI76_RS21770	0.13	-4.2
4,550,056	+		BWI76_RS21770	0.20	-0.8
4,550,056	+		BWI76_RS21770	0.20	-5.1
4,550,056	+		BWI76_RS21770	0.20	-1.6
4,550,064	-		BWI76_RS21770	0.21	-1.6
4,550,064	-		BWI76_RS21770	0.21	-2.3
4,550,102	+		BWI76_RS21770	0.31	-0.3
4,550,156	+		BWI76_RS21770	0.44	-1.1
4,550,166	+		BWI76_RS21770	0.46	-0.7
4,550,169	-		BWI76_RS21770	0.47	+0.6
4,550,183	+		BWI76_RS21770	0.50	-0.7
4,550,183	+		BWI76_RS21770	0.50	-1.4
4,550,183	+		BWI76_RS21770	0.50	+0.7
4,550,183	+		BWI76_RS21770	0.50	-0.2
4,550,183	+		BWI76_RS21770	0.50	+1.0
4,550,183	+		BWI76_RS21770	0.50	-1.2
4,550,183	+		BWI76_RS21770	0.50	-2.1
4,550,191	-		BWI76_RS21770	0.52	-1.3
4,550,201	-		BWI76_RS21770	0.55	-2.9
4,550,209	+		BWI76_RS21770	0.57	-1.8
4,550,224	+		BWI76_RS21770	0.60	-1.8
4,550,256	+		BWI76_RS21770	0.68	-2.5
4,550,262	+				+1.3
4,550,262	+		BWI76_RS21770	0.69	-2.3
4,550,270	-		BWI76_RS21770	0.71	-1.6
4,550,270	-		BWI76_RS21770	0.71	+0.1
4,550,272	+		BWI76_RS21770	0.72	-0.8
4,550,272	+		BWI76_RS21770	0.72	-0.6
4,550,272	+		BWI76_RS21770	0.72	-0.2
4,550,272	+		BWI76_RS21770	0.72	+0.1
4,550,272	+		BWI76_RS21770	0.72	-0.1
4,550,272	+		BWI76_RS21770	0.72	-0.2
4,550,272	+		BWI76_RS21770	0.72	-2.0
4,550,272	+		BWI76_RS21770	0.72	-1.0
4,550,280	-		BWI76_RS21770	0.74	-0.9
4,550,280	-		BWI76_RS21770	0.74	-1.7
4,550,280	-		BWI76_RS21770	0.74	-1.0
4,550,280	-		BWI76_RS21770	0.74	-1.1
4,550,287	+		BWI76_RS21770	0.75	-0.1
4,550,292	+		BWI76_RS21770	0.77	-0.6
4,550,307	+		BWI76_RS21770	0.80	+2.8
4,550,384	-				+2.3
4,550,429	+				+0.3
4,550,438	+				-2.2
4,550,457	+				+2.9
4,550,469	+				+0.3
4,550,471	+				-1.6
4,550,479	+				-2.2
4,550,479	+				+1.1
4,550,479	+				-2.2
4,550,483	+				+2.9
4,550,493	+				-1.8
4,550,503	+				+0.3
4,550,503	+				-2.2
4,550,503	+				-1.1
4,550,841	+		BWI76_RS21775	0.13	-1.3
4,550,849	-		BWI76_RS21775	0.14	+0.4
4,550,938	-		BWI76_RS21775	0.23	-2.2
4,550,949	+		BWI76_RS21775	0.24	-0.7
4,550,951	+		BWI76_RS21775	0.24	-2.6
4,550,951	+		BWI76_RS21775	0.24	+1.3
4,550,951	+		BWI76_RS21775	0.24	-1.0
4,550,951	+		BWI76_RS21775	0.24	+1.3
4,550,951	+		BWI76_RS21775	0.24	-1.8
4,550,951	+		BWI76_RS21775	0.24	+1.9
4,550,959	-		BWI76_RS21775	0.25	-0.3
4,550,959	-		BWI76_RS21775	0.25	+2.9
4,550,959	-		BWI76_RS21775	0.25	+1.3
4,550,959	-		BWI76_RS21775	0.25	-0.4
4,550,959	-		BWI76_RS21775	0.25	-1.1
4,550,959	-		BWI76_RS21775	0.25	+2.9
4,550,959	-		BWI76_RS21775	0.25	-0.2
4,550,994	+		BWI76_RS21775	0.29	-0.4
4,551,018	-		BWI76_RS21775	0.31	-3.6
4,551,018	-		BWI76_RS21775	0.31	+0.1
4,551,027	+		BWI76_RS21775	0.32	+1.1
4,551,035	-		BWI76_RS21775	0.33	-0.5
4,551,035	-		BWI76_RS21775	0.33	+0.4
4,551,035	-		BWI76_RS21775	0.33	+0.8
4,551,035	-		BWI76_RS21775	0.33	-1.7
4,551,074	+		BWI76_RS21775	0.37	+1.9
4,551,082	-		BWI76_RS21775	0.38	-1.2
4,551,082	-				-0.4
4,551,084	+		BWI76_RS21775	0.38	-0.7
4,551,084	+		BWI76_RS21775	0.38	-2.0
4,551,092	-		BWI76_RS21775	0.39	+0.9
4,551,095	-		BWI76_RS21775	0.39	-0.2
4,551,158	+		BWI76_RS21775	0.46	-1.9
4,551,166	-		BWI76_RS21775	0.47	+2.9
4,551,166	-		BWI76_RS21775	0.47	-0.1
4,551,173	+		BWI76_RS21775	0.48	-0.1
4,551,176	-		BWI76_RS21775	0.48	-1.8
4,551,235	+		BWI76_RS21775	0.54	+0.1
4,551,237	+		BWI76_RS21775	0.54	-1.7
4,551,283	+		BWI76_RS21775	0.59	-0.2
4,551,291	-		BWI76_RS21775	0.60	+0.3
4,551,331	+		BWI76_RS21775	0.64	-1.9
4,551,331	+		BWI76_RS21775	0.64	-3.0
4,551,339	-		BWI76_RS21775	0.65	-3.2
4,551,358	+		BWI76_RS21775	0.67	-0.7
4,551,366	+		BWI76_RS21775	0.68	-0.6
4,551,366	+		BWI76_RS21775	0.68	-0.2
4,551,374	-				+0.9
4,551,397	+		BWI76_RS21775	0.71	-2.9
4,551,397	+		BWI76_RS21775	0.71	-2.1
4,551,400	+		BWI76_RS21775	0.71	-0.7
4,551,402	+		BWI76_RS21775	0.72	+0.4
4,551,402	+		BWI76_RS21775	0.72	+2.9
4,551,402	+		BWI76_RS21775	0.72	-2.0
4,551,402	+		BWI76_RS21775	0.72	-1.2
4,551,402	+		BWI76_RS21775	0.72	-1.6
4,551,410	-		BWI76_RS21775	0.72	+0.2
4,551,410	-		BWI76_RS21775	0.72	-1.4
4,551,435	+		BWI76_RS21775	0.75	-1.3
4,551,435	+		BWI76_RS21775	0.75	-1.4
4,551,435	+		BWI76_RS21775	0.75	-0.5
4,551,443	-		BWI76_RS21775	0.76	-0.2
4,551,443	-		BWI76_RS21775	0.76	+0.1
4,551,443	-		BWI76_RS21775	0.76	-0.9
4,551,445	+		BWI76_RS21775	0.76	-1.5
4,551,452	-		BWI76_RS21775	0.77	-0.5
4,551,453	-		BWI76_RS21775	0.77	-0.1
4,551,453	-		BWI76_RS21775	0.77	-0.8
4,551,454	-		BWI76_RS21775	0.77	-2.6
4,551,464	-		BWI76_RS21775	0.78	-0.5
4,551,498	-		BWI76_RS21775	0.82	-0.1
4,551,504	+		BWI76_RS21775	0.82	-0.8
4,551,504	+		BWI76_RS21775	0.82	-0.0
4,551,504	+		BWI76_RS21775	0.82	-0.1
4,551,504	+		BWI76_RS21775	0.82	-1.7
4,551,504	+				+0.6
4,551,504	+		BWI76_RS21775	0.82	-0.7
4,551,504	+		BWI76_RS21775	0.82	-0.3
4,551,504	+		BWI76_RS21775	0.82	-1.8
4,551,504	+		BWI76_RS21775	0.82	-0.5
4,551,504	+		BWI76_RS21775	0.82	-0.4
4,551,504	+		BWI76_RS21775	0.82	-0.2
4,551,504	+		BWI76_RS21775	0.82	+1.4
4,551,504	+		BWI76_RS21775	0.82	+0.8
4,551,504	+		BWI76_RS21775	0.82	-1.8
4,551,504	+		BWI76_RS21775	0.82	-2.7
4,551,504	+		BWI76_RS21775	0.82	+0.2
4,551,504	+		BWI76_RS21775	0.82	-1.5
4,551,504	+		BWI76_RS21775	0.82	-1.1
4,551,504	+		BWI76_RS21775	0.82	+0.5
4,551,504	+		BWI76_RS21775	0.82	-1.0
4,551,506	+		BWI76_RS21775	0.82	-1.8
4,551,506	+		BWI76_RS21775	0.82	-1.9
4,551,512	-		BWI76_RS21775	0.83	+0.9
4,551,512	-		BWI76_RS21775	0.83	-1.4
4,551,512	-		BWI76_RS21775	0.83	-3.0
4,551,512	-		BWI76_RS21775	0.83	-0.3
4,551,512	-		BWI76_RS21775	0.83	-1.6
4,551,512	-		BWI76_RS21775	0.83	-2.0
4,551,512	-		BWI76_RS21775	0.83	-2.1
4,551,512	-		BWI76_RS21775	0.83	+0.1
4,551,512	-		BWI76_RS21775	0.83	-2.4
4,551,512	-		BWI76_RS21775	0.83	+0.1
4,551,512	-		BWI76_RS21775	0.83	-0.1
4,551,514	+		BWI76_RS21775	0.83	-2.4
4,551,514	-		BWI76_RS21775	0.83	-1.1
4,551,514	-		BWI76_RS21775	0.83	-0.9
4,551,522	-		BWI76_RS21775	0.84	-3.7
4,551,522	-		BWI76_RS21775	0.84	-2.7
4,551,524	-		BWI76_RS21775	0.84	-0.4
4,551,579	+				-0.5
4,551,579	+				-1.6
4,551,584	+				-1.5
4,551,587	-				-0.3
4,551,593	+				-2.2
4,551,599	-				-1.2
4,551,599	-				-1.4
4,551,601	-				-0.8
4,551,613	-				-0.7
4,551,635	+				+0.4
4,551,650	+				+0.3
4,551,675	+				-0.1
4,551,675	+				-0.2
4,551,685	+				+0.5
4,551,685	+				+0.1
4,551,701	-				-2.9
4,551,704	+				-1.3
4,551,704	+				-2.1
4,551,704	+				-0.7
4,551,704	+				+1.6
4,551,704	+				+0.2
4,551,712	-				-1.5
4,551,712	-				+2.9
4,551,716	+				-1.1
4,551,716	+				+0.8
4,551,716	+				+2.4
4,551,716	+				+0.8
4,551,724	-				+0.4
4,551,724	-				-1.8
4,551,740	-				+2.9
4,551,747	+				+0.6
4,551,776	-				-0.9
4,551,808	+				-1.6
4,551,808	+				+0.3
4,551,808	+				+0.0
4,551,809	+				-1.6
4,551,822	-				+2.9
4,551,832	+				+0.5
4,551,832	+				+0.1
4,551,832	+				-2.1
4,551,837	+				-0.6
4,551,840	-				-1.2
4,551,868	+				+0.1
4,551,868	+				+1.9
4,551,868	+				-1.3
4,551,868	+				-1.5
4,551,883	+				-1.2
4,551,890	-				+0.4
4,551,890	-				-1.3
4,551,890	-				-0.8
4,551,890	-				-1.1
4,551,963	-				-1.2
4,551,968	-		BWI76_RS21780	0.12	+0.4
4,551,970	+		BWI76_RS21780	0.14	-1.6
4,551,978	+		BWI76_RS21780	0.21	-0.4
4,552,031	-		BWI76_RS21780	0.65	+1.9
4,552,038	+		BWI76_RS21780	0.71	+1.9
4,552,038	+		BWI76_RS21780	0.71	+0.6
4,552,038	+		BWI76_RS21780	0.71	-2.7
4,552,038	+		BWI76_RS21780	0.71	+1.9
4,552,043	+				+0.4
4,552,043	+				+1.4
4,552,046	-		BWI76_RS21780	0.78	-1.1
4,552,046	-		BWI76_RS21780	0.78	+0.1
4,552,051	-		BWI76_RS21780	0.82	-0.8
4,552,060	-				+2.9
4,552,088	+				+1.5
4,552,128	-				-0.7
4,552,148	+				-1.6
4,552,155	+				-2.1
4,552,155	+				-0.1
4,552,160	+				-3.1
4,552,160	+				-1.8
4,552,163	-				+0.3
4,552,163	-				+0.4
4,552,163	-				+0.3
4,552,168	-				-0.5
4,552,205	+		BWI76_RS21785	0.12	-1.4
4,552,205	+		BWI76_RS21785	0.12	-0.6
4,552,213	+		BWI76_RS21785	0.13	-0.8
4,552,221	-		BWI76_RS21785	0.14	-0.2
4,552,238	+		BWI76_RS21785	0.17	-0.1
4,552,238	+		BWI76_RS21785	0.17	-1.9
4,552,238	+		BWI76_RS21785	0.17	+0.9
4,552,246	-		BWI76_RS21785	0.19	-0.0
4,552,261	+		BWI76_RS21785	0.21	-0.3
4,552,261	-		BWI76_RS21785	0.21	+0.8
4,552,290	+		BWI76_RS21785	0.26	-2.4
4,552,298	+		BWI76_RS21785	0.27	-0.4
4,552,298	-		BWI76_RS21785	0.27	+0.5
4,552,306	-		BWI76_RS21785	0.29	-1.0
4,552,316	-		BWI76_RS21785	0.30	-1.1
4,552,331	+		BWI76_RS21785	0.33	-0.9
4,552,331	+		BWI76_RS21785	0.33	-0.1
4,552,331	+				+1.9
4,552,331	+		BWI76_RS21785	0.33	-2.6
4,552,336	+		BWI76_RS21785	0.33	-0.7
4,552,336	+		BWI76_RS21785	0.33	-1.1
4,552,340	-		BWI76_RS21785	0.34	+0.5
4,552,381	+		BWI76_RS21785	0.41	-1.0
4,552,484	-		BWI76_RS21785	0.58	-2.4
4,552,497	+		BWI76_RS21785	0.60	-0.4
4,552,516	+		BWI76_RS21785	0.63	-3.6
4,552,524	-		BWI76_RS21785	0.65	-1.7
4,552,565	+		BWI76_RS21785	0.71	-1.9
4,552,566	+		BWI76_RS21785	0.72	+3.7
4,552,568	-		BWI76_RS21785	0.72	+1.9
4,552,573	-		BWI76_RS21785	0.73	-2.3
4,552,578	-		BWI76_RS21785	0.74	-0.2