Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20180 and BWI76_RS20185 are separated by 98 nucleotides BWI76_RS20185 and BWI76_RS20190 are separated by 15 nucleotides BWI76_RS20190 and BWI76_RS20195 overlap by 23 nucleotides BWI76_RS20195 and BWI76_RS20200 are separated by 463 nucleotides
BWI76_RS20180: BWI76_RS20180 - NADH-quinone oxidoreductase subunit C/D, at 4,228,967 to 4,230,763
_RS20180
BWI76_RS20185: BWI76_RS20185 - NADH-quinone oxidoreductase subunit B, at 4,230,862 to 4,231,536
_RS20185
BWI76_RS20190: BWI76_RS20190 - NADH-quinone oxidoreductase subunit A, at 4,231,552 to 4,231,998
_RS20190
BWI76_RS20195: BWI76_RS20195 - hypothetical protein, at 4,231,976 to 4,232,186
_RS20195
BWI76_RS20200: BWI76_RS20200 - transcriptional regulator LrhA, at 4,232,650 to 4,233,576
_RS20200
Position (kb) 4231
4232 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 4230.870 kb on + strand at 4231.087 kb on + strand, within BWI76_RS20185 at 4231.302 kb on - strand at 4231.557 kb on + strand at 4231.565 kb on - strand at 4231.591 kb on - strand at 4231.657 kb on - strand, within BWI76_RS20190 at 4231.908 kb on + strand, within BWI76_RS20190 at 4231.926 kb on - strand, within BWI76_RS20190 at 4232.281 kb on - strand at 4232.334 kb on - strand at 4232.434 kb on - strand at 4232.691 kb on - strand at 4232.705 kb on - strand at 4232.874 kb on + strand, within BWI76_RS20200 at 4232.962 kb on - strand, within BWI76_RS20200 at 4232.962 kb on - strand, within BWI76_RS20200
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 4,230,870 + -1.2 4,231,087 + BWI76_RS20185 0.33 -0.4 4,231,302 - -1.0 4,231,557 + -4.6 4,231,565 - -3.4 4,231,591 - +2.0 4,231,657 - BWI76_RS20190 0.23 -6.0 4,231,908 + BWI76_RS20190 0.80 -5.3 4,231,926 - BWI76_RS20190 0.84 -5.3 4,232,281 - +1.0 4,232,334 - -0.3 4,232,434 - +1.3 4,232,691 - +0.7 4,232,705 - +0.9 4,232,874 + BWI76_RS20200 0.24 +0.3 4,232,962 - BWI76_RS20200 0.34 +0.9 4,232,962 - BWI76_RS20200 0.34 +0.4
Or see this region's nucleotide sequence