Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18145

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18135 and BWI76_RS18140 overlap by 1 nucleotidesBWI76_RS18140 and BWI76_RS18145 are separated by 198 nucleotidesBWI76_RS18145 and BWI76_RS18150 are separated by 8 nucleotidesBWI76_RS18150 and BWI76_RS18155 are separated by 81 nucleotides BWI76_RS18135: BWI76_RS18135 - zinc ABC transporter ATP-binding protein ZnuC, at 3,769,674 to 3,770,426 _RS18135 BWI76_RS18140: BWI76_RS18140 - zinc ABC transporter permease, at 3,770,426 to 3,771,211 _RS18140 BWI76_RS18145: BWI76_RS18145 - Holliday junction branch migration DNA helicase RuvB, at 3,771,410 to 3,772,420 _RS18145 BWI76_RS18150: BWI76_RS18150 - Holliday junction branch migration protein RuvA, at 3,772,429 to 3,773,040 _RS18150 BWI76_RS18155: BWI76_RS18155 - crossover junction endodeoxyribonuclease RuvC, at 3,773,122 to 3,773,643 _RS18155 Position (kb) 3771 3772 3773Strain fitness (log2 ratio) -2 -1 0 1at 3770.542 kb on - strand, within BWI76_RS18140at 3770.578 kb on + strand, within BWI76_RS18140at 3770.611 kb on - strand, within BWI76_RS18140at 3771.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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3,770,542 - BWI76_RS18140 0.15 -2.1
3,770,578 + BWI76_RS18140 0.19 +0.5
3,770,611 - BWI76_RS18140 0.24 -1.1
3,771,435 - -0.4

Or see this region's nucleotide sequence