Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17705

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
3,680,942	+		BWI76_RS17700	0.56	-1.2
3,681,046	+		BWI76_RS17700	0.62	-0.7
3,681,062	+		BWI76_RS17700	0.63	-0.5
3,681,062	+		BWI76_RS17700	0.63	-0.5
3,681,077	-		BWI76_RS17700	0.64	-0.6
3,681,162	-		BWI76_RS17700	0.69	-3.2
3,681,284	-		BWI76_RS17700	0.76	-1.8
3,681,308	+		BWI76_RS17700	0.77	+0.8
3,681,316	-		BWI76_RS17700	0.77	+0.2
3,681,316	-		BWI76_RS17700	0.77	-2.6
3,681,421	+		BWI76_RS17700	0.83	-0.4
3,681,432	+		BWI76_RS17700	0.84	+0.6
3,681,432	+		BWI76_RS17700	0.84	-0.2
3,681,561	+				-1.5
3,681,569	-				-0.9
3,681,600	-				+1.1
3,681,705	+				+0.7
3,681,705	+				+0.2
3,681,705	+				-2.1
3,681,705	+				+0.7
3,681,707	+				+0.2
3,681,713	-				+0.5
3,681,715	-				+2.6
3,681,725	+				-0.7
3,681,733	-				-0.8
3,681,733	-				-0.7
3,681,733	-				+0.3
3,681,733	-				-0.3
3,681,804	-				-0.7
3,681,813	+				+1.5
3,681,820	-				+0.1
3,681,820	-				+1.2
3,681,826	-				+0.4
3,681,826	-				-1.4
3,681,826	-				-0.4
3,681,826	-				-0.3
3,681,831	-				+0.3
3,681,842	-				+0.1
3,681,844	-				-1.4
3,681,847	-				-0.4
3,681,884	-				-1.0
3,681,909	-				+0.6
3,681,909	-				-1.2
3,681,940	+				+0.7
3,681,948	-				+0.5
3,681,948	-				-1.8
3,681,988	-		BWI76_RS17705	0.14	-0.2
3,681,988	-		BWI76_RS17705	0.14	-0.7
3,681,993	-		BWI76_RS17705	0.15	-1.0
3,681,993	-		BWI76_RS17705	0.15	-1.7
3,682,016	+		BWI76_RS17705	0.18	+1.5
3,682,019	-		BWI76_RS17705	0.18	-0.1
3,682,041	-		BWI76_RS17705	0.21	-2.1
3,682,064	+		BWI76_RS17705	0.23	-1.1
3,682,072	-		BWI76_RS17705	0.24	-1.3
3,682,072	-		BWI76_RS17705	0.24	-0.2
3,682,072	-				+0.5
3,682,126	+		BWI76_RS17705	0.31	-1.1
3,682,126	+		BWI76_RS17705	0.31	-1.9
3,682,126	+		BWI76_RS17705	0.31	+2.1
3,682,126	+		BWI76_RS17705	0.31	-0.4
3,682,126	+		BWI76_RS17705	0.31	-0.3
3,682,133	+		BWI76_RS17705	0.31	+1.5
3,682,134	-		BWI76_RS17705	0.32	-0.8
3,682,134	-		BWI76_RS17705	0.32	-1.1
3,682,134	-		BWI76_RS17705	0.32	-0.6
3,682,134	-		BWI76_RS17705	0.32	-1.0
3,682,134	-		BWI76_RS17705	0.32	-3.6
3,682,134	-		BWI76_RS17705	0.32	-2.3
3,682,134	-		BWI76_RS17705	0.32	-0.8
3,682,134	-		BWI76_RS17705	0.32	-1.8
3,682,134	-		BWI76_RS17705	0.32	-1.2
3,682,134	-		BWI76_RS17705	0.32	-1.7
3,682,134	-		BWI76_RS17705	0.32	-0.3
3,682,134	-		BWI76_RS17705	0.32	-3.2
3,682,134	-		BWI76_RS17705	0.32	-3.2
3,682,139	-		BWI76_RS17705	0.32	-1.8
3,682,141	-		BWI76_RS17705	0.32	-2.6
3,682,141	-		BWI76_RS17705	0.32	-0.5
3,682,141	-		BWI76_RS17705	0.32	-1.4
3,682,141	-		BWI76_RS17705	0.32	+0.6
3,682,141	-		BWI76_RS17705	0.32	-1.6
3,682,141	-		BWI76_RS17705	0.32	-2.0
3,682,141	-		BWI76_RS17705	0.32	-1.5
3,682,150	+		BWI76_RS17705	0.33	-0.5
3,682,150	+		BWI76_RS17705	0.33	-0.1
3,682,150	+		BWI76_RS17705	0.33	-0.1
3,682,150	+				+0.3
3,682,158	-		BWI76_RS17705	0.34	-1.6
3,682,158	-		BWI76_RS17705	0.34	+0.6
3,682,158	-		BWI76_RS17705	0.34	-1.3
3,682,158	-		BWI76_RS17705	0.34	-1.9
3,682,158	-		BWI76_RS17705	0.34	+2.2
3,682,158	-		BWI76_RS17705	0.34	-1.3
3,682,158	-		BWI76_RS17705	0.34	-1.5
3,682,158	-		BWI76_RS17705	0.34	-0.4
3,682,158	-		BWI76_RS17705	0.34	-2.4
3,682,167	+		BWI76_RS17705	0.35	+0.3
3,682,175	-		BWI76_RS17705	0.36	-1.5
3,682,175	-		BWI76_RS17705	0.36	+2.1
3,682,175	-		BWI76_RS17705	0.36	-3.4
3,682,179	-		BWI76_RS17705	0.37	-1.9
3,682,241	-		BWI76_RS17705	0.44	-1.8
3,682,248	+		BWI76_RS17705	0.45	-1.9
3,682,282	+		BWI76_RS17705	0.49	-0.6
3,682,282	-		BWI76_RS17705	0.49	-1.1
3,682,297	+		BWI76_RS17705	0.51	-0.6
3,682,297	+		BWI76_RS17705	0.51	+3.1
3,682,300	-		BWI76_RS17705	0.51	-2.1
3,682,300	-		BWI76_RS17705	0.51	+1.1
3,682,300	-		BWI76_RS17705	0.51	-0.4
3,682,300	-		BWI76_RS17705	0.51	-1.7
3,682,300	-		BWI76_RS17705	0.51	-1.7
3,682,303	+				+0.5
3,682,305	+		BWI76_RS17705	0.52	-2.6
3,682,305	-		BWI76_RS17705	0.52	+0.1
3,682,305	-		BWI76_RS17705	0.52	-1.2
3,682,310	+				+3.1
3,682,313	-		BWI76_RS17705	0.53	-0.9
3,682,318	-		BWI76_RS17705	0.53	-0.9
3,682,318	-				-0.3
3,682,318	-		BWI76_RS17705	0.53	-1.7
3,682,318	-		BWI76_RS17705	0.53	+2.1
3,682,423	+		BWI76_RS17705	0.65	-1.1
3,682,451	+		BWI76_RS17705	0.69	-2.7
3,682,459	-		BWI76_RS17705	0.70	+1.1
3,682,468	+		BWI76_RS17705	0.71	-0.1
3,682,487	+		BWI76_RS17705	0.73	-1.4
3,682,487	+		BWI76_RS17705	0.73	+1.1
3,682,487	+		BWI76_RS17705	0.73	+1.1
3,682,487	+		BWI76_RS17705	0.73	-0.7
3,682,487	+		BWI76_RS17705	0.73	+2.1
3,682,487	+		BWI76_RS17705	0.73	+0.1
3,682,495	-		BWI76_RS17705	0.74	-2.8
3,682,495	-		BWI76_RS17705	0.74	+1.5
3,682,495	-		BWI76_RS17705	0.74	-1.3
3,682,495	-		BWI76_RS17705	0.74	+1.1
3,682,514	-		BWI76_RS17705	0.76	-0.8
3,682,515	-		BWI76_RS17705	0.76	+1.1
3,682,624	+		BWI76_RS17705	0.89	-2.1
3,682,636	-				-0.7
3,682,649	-				+1.4
3,682,652	+				-1.9
3,682,716	+				-3.5
3,682,723	+				-1.2
3,682,723	+				-0.6
3,682,738	+				+0.5
3,682,739	-				+0.8
3,682,754	+				-2.4
3,682,762	-				-0.6
3,682,790	-		BWI76_RS17710	0.21	+2.1
3,682,810	+		BWI76_RS17710	0.30	+0.5
3,682,826	-		BWI76_RS17710	0.37	-0.5
3,682,851	+		BWI76_RS17710	0.49	-0.6
3,682,851	+		BWI76_RS17710	0.49	-0.8
3,682,856	+				+1.1
3,682,859	-		BWI76_RS17710	0.52	-1.6
3,682,859	-		BWI76_RS17710	0.52	-0.2
3,682,859	-		BWI76_RS17710	0.52	-1.8
3,682,859	-		BWI76_RS17710	0.52	-0.1
3,682,861	+		BWI76_RS17710	0.53	-1.1
3,682,861	+		BWI76_RS17710	0.53	-0.8
3,682,861	+				+3.1
3,682,861	+		BWI76_RS17710	0.53	+0.0
3,682,861	+		BWI76_RS17710	0.53	-1.0
3,682,861	+		BWI76_RS17710	0.53	-1.4
3,682,861	+		BWI76_RS17710	0.53	+1.5
3,682,861	+		BWI76_RS17710	0.53	+0.5
3,682,861	+		BWI76_RS17710	0.53	+2.1
3,682,861	+		BWI76_RS17710	0.53	-0.6
3,682,861	+		BWI76_RS17710	0.53	-1.2
3,682,864	-		BWI76_RS17710	0.55	+0.3
3,682,864	-		BWI76_RS17710	0.55	-1.2
3,682,869	-		BWI76_RS17710	0.57	-0.6
3,682,869	-		BWI76_RS17710	0.57	+2.1
3,682,869	-				+3.1
3,682,869	-		BWI76_RS17710	0.57	+0.5
3,682,869	-		BWI76_RS17710	0.57	-0.2
3,682,933	+		BWI76_RS17710	0.86	-0.9
3,682,933	+		BWI76_RS17710	0.86	-1.2
3,682,933	+		BWI76_RS17710	0.86	+0.4
3,682,933	+		BWI76_RS17710	0.86	-1.5
3,682,934	+		BWI76_RS17710	0.86	+0.5
3,682,942	-				+0.1
3,682,970	+				+0.4
3,682,977	+				+0.8
3,682,993	+				-1.2
3,682,993	+				+1.8
3,683,187	-		BWI76_RS17715	0.27	+0.1
3,683,192	+		BWI76_RS17715	0.28	-0.4
3,683,193	+		BWI76_RS17715	0.28	+1.4
3,683,199	-		BWI76_RS17715	0.29	+0.1
3,683,336	+		BWI76_RS17715	0.51	+0.9