Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17695

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
3,677,196	-		BWI76_RS17690	0.43	+1.0
3,677,241	-		BWI76_RS17690	0.47	-0.6
3,677,390	-		BWI76_RS17690	0.57	-1.3
3,677,412	-		BWI76_RS17690	0.59	-0.8
3,677,457	-		BWI76_RS17690	0.62	-0.1
3,677,606	-		BWI76_RS17690	0.73	-3.3
3,677,645	-		BWI76_RS17690	0.76	-2.4
3,677,740	-		BWI76_RS17690	0.82	+2.5
3,677,768	+		BWI76_RS17690	0.84	-3.3
3,677,776	-		BWI76_RS17690	0.85	+2.0
3,677,817	+		BWI76_RS17690	0.88	+0.3
3,677,825	-		BWI76_RS17690	0.89	-2.1
3,677,847	+				-1.8
3,677,852	+				-0.3
3,677,855	-				-1.7
3,677,855	-				-1.8
3,677,863	+				+0.4
3,677,873	+				+0.1
3,677,882	+				+0.2
3,677,882	+				-0.1
3,677,883	+				-0.6
3,677,936	-				-2.1
3,677,938	+				+0.3
3,677,953	+				-0.0
3,677,961	-				-0.7
3,677,961	-				-0.4
3,678,017	+				-1.5
3,678,048	-				-0.1
3,678,074	-				+0.8
3,678,084	-				+0.3
3,678,084	-				+0.1
3,678,104	-				+0.3
3,678,104	-				-0.8
3,678,119	-				+0.4
3,678,119	-				-0.6
3,678,119	-				+0.1
3,678,119	-				+0.4
3,678,125	-				-0.1
3,678,208	-				+1.3
3,678,208	-				+2.1
3,678,208	-				+0.5
3,678,208	-				+1.2
3,678,221	-				-0.1
3,678,226	+		BWI76_RS17695	0.10	-0.7
3,678,228	-		BWI76_RS17695	0.10	-0.8
3,678,233	-		BWI76_RS17695	0.11	+0.1
3,678,233	-		BWI76_RS17695	0.11	+1.2
3,678,235	+		BWI76_RS17695	0.11	+3.1
3,678,243	-				+3.1
3,678,243	-		BWI76_RS17695	0.11	-0.6
3,678,243	-		BWI76_RS17695	0.11	-1.3
3,678,243	-		BWI76_RS17695	0.11	+3.1
3,678,243	-		BWI76_RS17695	0.11	-1.1
3,678,250	+		BWI76_RS17695	0.12	-1.6
3,678,251	-		BWI76_RS17695	0.12	-2.8
3,678,279	+		BWI76_RS17695	0.14	+1.5
3,678,280	+		BWI76_RS17695	0.14	-1.7
3,678,284	+		BWI76_RS17695	0.14	-1.2
3,678,287	-		BWI76_RS17695	0.15	-1.6
3,678,287	-		BWI76_RS17695	0.15	-2.4
3,678,287	-		BWI76_RS17695	0.15	-1.5
3,678,287	-		BWI76_RS17695	0.15	-1.7
3,678,287	-		BWI76_RS17695	0.15	+0.2
3,678,287	-		BWI76_RS17695	0.15	-0.9
3,678,287	-				+2.1
3,678,291	+		BWI76_RS17695	0.15	+1.3
3,678,291	+		BWI76_RS17695	0.15	+3.1
3,678,291	+		BWI76_RS17695	0.15	-0.3
3,678,299	-		BWI76_RS17695	0.16	-3.2
3,678,299	-		BWI76_RS17695	0.16	-0.2
3,678,299	-		BWI76_RS17695	0.16	+0.7
3,678,299	-		BWI76_RS17695	0.16	+1.6
3,678,299	-		BWI76_RS17695	0.16	-1.1
3,678,299	-		BWI76_RS17695	0.16	-2.9
3,678,299	-		BWI76_RS17695	0.16	-1.3
3,678,299	-		BWI76_RS17695	0.16	-2.8
3,678,301	+		BWI76_RS17695	0.16	-0.9
3,678,324	-				+1.7
3,678,359	-		BWI76_RS17695	0.20	+1.5
3,678,360	+		BWI76_RS17695	0.20	+1.5
3,678,369	-		BWI76_RS17695	0.21	-1.5
3,678,369	-		BWI76_RS17695	0.21	-0.1
3,678,369	-		BWI76_RS17695	0.21	-1.3
3,678,369	-		BWI76_RS17695	0.21	-0.8
3,678,401	-		BWI76_RS17695	0.23	-1.3
3,678,418	-		BWI76_RS17695	0.24	-0.6
3,678,418	-		BWI76_RS17695	0.24	-0.5
3,678,420	+		BWI76_RS17695	0.25	+3.1
3,678,423	-		BWI76_RS17695	0.25	-0.7
3,678,425	-		BWI76_RS17695	0.25	+1.6
3,678,428	-		BWI76_RS17695	0.25	-0.3
3,678,428	-		BWI76_RS17695	0.25	+1.6
3,678,508	-		BWI76_RS17695	0.31	+0.7
3,678,508	-				+0.1
3,678,521	+		BWI76_RS17695	0.32	+0.5
3,678,521	+		BWI76_RS17695	0.32	-1.5
3,678,521	+		BWI76_RS17695	0.32	+0.7
3,678,529	-		BWI76_RS17695	0.33	-0.9
3,678,529	-		BWI76_RS17695	0.33	-2.7
3,678,529	-		BWI76_RS17695	0.33	-1.6
3,678,529	-		BWI76_RS17695	0.33	-1.1
3,678,529	-		BWI76_RS17695	0.33	+0.3
3,678,529	-		BWI76_RS17695	0.33	-2.4
3,678,529	-		BWI76_RS17695	0.33	-0.0
3,678,529	-		BWI76_RS17695	0.33	+1.1
3,678,529	-		BWI76_RS17695	0.33	+0.3
3,678,529	-		BWI76_RS17695	0.33	+1.7
3,678,534	-		BWI76_RS17695	0.33	-1.8
3,678,534	-		BWI76_RS17695	0.33	-0.8
3,678,534	-		BWI76_RS17695	0.33	-2.2
3,678,544	-		BWI76_RS17695	0.34	-1.4
3,678,544	-		BWI76_RS17695	0.34	-1.4
3,678,544	-		BWI76_RS17695	0.34	-0.7
3,678,544	-		BWI76_RS17695	0.34	-1.9
3,678,544	-		BWI76_RS17695	0.34	-0.7
3,678,561	-		BWI76_RS17695	0.35	-0.8
3,678,561	-		BWI76_RS17695	0.35	+0.1
3,678,588	+				+0.1
3,678,588	+		BWI76_RS17695	0.37	+2.3
3,678,596	-		BWI76_RS17695	0.37	+1.2
3,678,596	-		BWI76_RS17695	0.37	-0.8
3,678,596	-		BWI76_RS17695	0.37	+0.0
3,678,596	-		BWI76_RS17695	0.37	-1.2
3,678,596	-		BWI76_RS17695	0.37	-0.4
3,678,601	-		BWI76_RS17695	0.38	-1.3
3,678,608	-		BWI76_RS17695	0.38	-0.4
3,678,608	-		BWI76_RS17695	0.38	-0.6
3,678,655	-		BWI76_RS17695	0.42	+0.3
3,678,663	-		BWI76_RS17695	0.42	-0.8
3,678,684	-		BWI76_RS17695	0.44	-1.0
3,678,687	-		BWI76_RS17695	0.44	+3.1
3,678,687	-		BWI76_RS17695	0.44	-1.5
3,678,689	-		BWI76_RS17695	0.44	-2.1
3,678,689	-		BWI76_RS17695	0.44	+1.6
3,678,751	-		BWI76_RS17695	0.49	+1.6
3,678,758	-		BWI76_RS17695	0.49	+0.3
3,678,790	+		BWI76_RS17695	0.52	-1.9
3,678,835	-		BWI76_RS17695	0.55	-1.3
3,678,884	-		BWI76_RS17695	0.59	-0.8
3,678,891	+				+1.5
3,678,893	+		BWI76_RS17695	0.59	-0.7
3,678,901	-		BWI76_RS17695	0.60	-1.3
3,678,922	-		BWI76_RS17695	0.61	+3.1
3,678,922	-		BWI76_RS17695	0.61	+0.1
3,678,996	+		BWI76_RS17695	0.67	+0.0
3,679,011	+		BWI76_RS17695	0.68	-3.6
3,679,022	+		BWI76_RS17695	0.69	-2.3
3,679,022	+		BWI76_RS17695	0.69	-0.1
3,679,022	+		BWI76_RS17695	0.69	+3.1
3,679,022	+		BWI76_RS17695	0.69	-0.5
3,679,027	+		BWI76_RS17695	0.69	-1.1
3,679,029	+		BWI76_RS17695	0.69	-0.1
3,679,029	+		BWI76_RS17695	0.69	+0.3
3,679,029	+		BWI76_RS17695	0.69	+1.1
3,679,029	+		BWI76_RS17695	0.69	-1.6
3,679,029	+		BWI76_RS17695	0.69	-2.1
3,679,029	+		BWI76_RS17695	0.69	-2.3
3,679,029	+		BWI76_RS17695	0.69	-0.1
3,679,029	+		BWI76_RS17695	0.69	-1.1
3,679,029	+		BWI76_RS17695	0.69	-1.3
3,679,029	+		BWI76_RS17695	0.69	+1.5
3,679,029	+		BWI76_RS17695	0.69	+0.7
3,679,029	+		BWI76_RS17695	0.69	+0.5
3,679,029	+		BWI76_RS17695	0.69	-0.5
3,679,029	+		BWI76_RS17695	0.69	-0.7
3,679,029	+		BWI76_RS17695	0.69	+1.2
3,679,029	+				+3.1
3,679,029	+		BWI76_RS17695	0.69	-1.5
3,679,029	+		BWI76_RS17695	0.69	-1.7
3,679,029	+		BWI76_RS17695	0.69	-0.6
3,679,029	+		BWI76_RS17695	0.69	-1.4
3,679,029	+				+3.1
3,679,029	+		BWI76_RS17695	0.69	-1.5
3,679,029	+		BWI76_RS17695	0.69	-0.5
3,679,029	+		BWI76_RS17695	0.69	-0.9
3,679,029	+		BWI76_RS17695	0.69	-1.1
3,679,029	+		BWI76_RS17695	0.69	-0.1
3,679,029	+		BWI76_RS17695	0.69	+0.3
3,679,029	+		BWI76_RS17695	0.69	+3.1
3,679,029	+		BWI76_RS17695	0.69	+0.5
3,679,029	+		BWI76_RS17695	0.69	-2.6
3,679,029	+		BWI76_RS17695	0.69	-1.0
3,679,029	+		BWI76_RS17695	0.69	+0.7
3,679,029	+		BWI76_RS17695	0.69	-1.8
3,679,029	+		BWI76_RS17695	0.69	-1.3
3,679,029	+		BWI76_RS17695	0.69	-0.8
3,679,029	+		BWI76_RS17695	0.69	-1.9
3,679,029	+		BWI76_RS17695	0.69	-0.1
3,679,029	+		BWI76_RS17695	0.69	+1.5
3,679,030	-		BWI76_RS17695	0.69	-1.7
3,679,037	-		BWI76_RS17695	0.70	+0.7
3,679,037	-		BWI76_RS17695	0.70	-3.0
3,679,037	-		BWI76_RS17695	0.70	+3.1
3,679,037	-		BWI76_RS17695	0.70	+3.1
3,679,037	-		BWI76_RS17695	0.70	-0.1
3,679,037	-		BWI76_RS17695	0.70	+1.3
3,679,037	-		BWI76_RS17695	0.70	-0.3
3,679,037	-		BWI76_RS17695	0.70	-0.7
3,679,037	-		BWI76_RS17695	0.70	-1.0
3,679,037	-		BWI76_RS17695	0.70	-0.8
3,679,037	-		BWI76_RS17695	0.70	-1.0
3,679,037	-		BWI76_RS17695	0.70	-0.2
3,679,037	-				+1.5
3,679,037	-		BWI76_RS17695	0.70	+1.1
3,679,037	-		BWI76_RS17695	0.70	-2.9
3,679,037	-		BWI76_RS17695	0.70	+0.3
3,679,037	-		BWI76_RS17695	0.70	-1.4
3,679,037	-		BWI76_RS17695	0.70	-1.3
3,679,037	-		BWI76_RS17695	0.70	-1.5
3,679,037	-		BWI76_RS17695	0.70	-1.9
3,679,037	-		BWI76_RS17695	0.70	-2.0
3,679,037	-		BWI76_RS17695	0.70	-3.0
3,679,037	-		BWI76_RS17695	0.70	+0.7
3,679,037	-		BWI76_RS17695	0.70	+1.5
3,679,044	-		BWI76_RS17695	0.70	-1.0
3,679,077	+		BWI76_RS17695	0.73	-1.5
3,679,082	-		BWI76_RS17695	0.73	+0.0
3,679,100	+		BWI76_RS17695	0.75	-1.0
3,679,127	+		BWI76_RS17695	0.77	-0.3
3,679,142	+		BWI76_RS17695	0.78	+3.1
3,679,177	-		BWI76_RS17695	0.80	+0.3
3,679,193	-		BWI76_RS17695	0.81	+0.3
3,679,204	-		BWI76_RS17695	0.82	-1.7
3,679,214	-		BWI76_RS17695	0.83	+0.7
3,679,218	+		BWI76_RS17695	0.83	-2.5
3,679,221	+		BWI76_RS17695	0.83	+0.7
3,679,238	-		BWI76_RS17695	0.85	-1.5
3,679,254	-		BWI76_RS17695	0.86	-1.6
3,679,364	+				+0.7
3,679,441	+				-1.3
3,679,441	+				-0.8
3,679,441	+				+2.1
3,679,441	+				+1.1
3,679,441	+				-0.9
3,679,441	+				+0.3
3,679,449	+				-0.8
3,679,449	+				+1.1
3,679,449	-				-3.4
3,679,449	-				+3.1
3,679,457	-				+0.7
3,679,457	-				+3.1
3,679,513	-				+0.1
3,679,793	+				-3.2
3,679,793	+				-1.7
3,679,798	+				-1.5
3,679,803	+				-1.5
3,679,803	+				-1.7
3,679,803	+				-1.3
3,679,803	+				+0.3
3,679,803	+				-1.6
3,679,803	+				-0.4
3,679,803	+				-1.7
3,679,803	+				-1.9
3,679,803	+				-2.9
3,679,803	+				-2.4
3,679,803	+				-1.3
3,679,803	+				-1.2
3,679,803	+				-3.0
3,679,803	+				-3.3
3,679,803	+				-1.9
3,679,803	+				-1.3
3,679,803	+				-1.3
3,679,803	+				-0.3
3,679,803	+				+1.5
3,679,803	+				-0.4
3,679,803	+				-2.0
3,679,803	+				-3.0
3,679,803	+				-1.3
3,679,803	+				+1.0
3,679,803	+				-3.6
3,679,803	+				-1.3
3,679,803	+				-1.5
3,679,803	+				-0.5
3,679,803	+				+1.1
3,679,803	+				-3.0
3,679,803	+				-0.5
3,679,803	+				-2.7
3,679,803	+				-1.1
3,679,803	+				-2.2
3,679,803	+				-0.3
3,679,803	+				+1.6
3,679,803	+				-1.6
3,679,803	+				-2.8
3,679,803	+				-2.6
3,679,803	+				+1.9
3,679,803	+				-2.9
3,679,803	+				-0.1
3,679,803	+				-0.5
3,679,803	+				-1.4
3,679,803	+				-0.4
3,679,803	+				-1.5
3,679,808	+				-1.1
3,679,808	+				-0.5
3,679,811	-				+1.6
3,679,811	-				+0.2
3,679,811	-				-1.0
3,679,811	-				+2.1
3,679,811	-				-1.4
3,679,811	-				-6.1
3,679,811	-				-1.0
3,679,811	-				-0.6
3,679,811	-				-0.6
3,679,811	-				+3.1
3,679,811	-				-0.7
3,679,811	-				-1.4
3,679,811	-				-0.3
3,679,819	+				-1.5
3,679,826	-				-0.1
3,679,827	-				+0.7
3,679,831	-				-3.0
3,679,839	+				-1.2
3,679,839	+				-1.5
3,679,847	-				-0.3
3,679,897	+				+0.3
3,679,897	+				+0.1
3,679,916	+				-1.6
3,679,916	+				-0.2
3,679,916	+				-1.3
3,679,930	+				+0.2
3,679,936	+				-4.5
3,679,956	-				-0.1
3,679,966	-				-1.5
3,679,985	+				-0.3
3,679,997	+				-0.1
3,679,997	+				-1.6
3,679,997	+				-2.3
3,679,997	+				-0.9
3,680,000	-				-0.1
3,680,005	-				-2.6
3,680,005	-				-2.1
3,680,005	-				-2.0
3,680,005	-				+0.9
3,680,005	-				-3.2
3,680,166	-				+0.3
3,680,205	-		BWI76_RS17700	0.14	-2.1
3,680,263	+		BWI76_RS17700	0.17	-0.3
3,680,263	+		BWI76_RS17700	0.17	+1.1
3,680,271	-		BWI76_RS17700	0.18	-2.4
3,680,283	+		BWI76_RS17700	0.18	+0.0
3,680,316	-		BWI76_RS17700	0.20	-2.0