Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17035

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
3,532,395	+				+0.0
3,532,452	+				+2.0
3,532,462	-				+0.0
3,532,580	+		BWI76_RS17030	0.27	+3.0
3,532,585	+		BWI76_RS17030	0.28	-1.1
3,532,595	+		BWI76_RS17030	0.30	-0.6
3,532,595	+		BWI76_RS17030	0.30	-2.7
3,532,669	+		BWI76_RS17030	0.41	+2.9
3,532,669	+		BWI76_RS17030	0.41	-1.3
3,532,697	+		BWI76_RS17030	0.45	-1.9
3,532,705	-		BWI76_RS17030	0.46	+3.0
3,532,740	-		BWI76_RS17030	0.52	+1.5
3,532,759	+		BWI76_RS17030	0.54	-2.6
3,532,792	+		BWI76_RS17030	0.59	-1.0
3,532,792	+		BWI76_RS17030	0.59	-0.7
3,532,792	+		BWI76_RS17030	0.59	+0.3
3,532,803	+		BWI76_RS17030	0.61	-1.2
3,532,810	+		BWI76_RS17030	0.62	-1.5
3,532,812	+		BWI76_RS17030	0.62	-0.2
3,532,820	-		BWI76_RS17030	0.64	-0.3
3,532,820	-		BWI76_RS17030	0.64	+2.0
3,532,863	+		BWI76_RS17030	0.70	-1.1
3,532,925	+		BWI76_RS17030	0.80	-1.6
3,532,931	+		BWI76_RS17030	0.80	-1.2
3,532,971	+		BWI76_RS17030	0.87	+0.5
3,532,992	-		BWI76_RS17030	0.90	+1.1
3,532,992	-		BWI76_RS17030	0.90	+2.2
3,532,999	+				-0.5
3,533,017	+				-1.1
3,533,072	+				-1.3
3,533,072	+				-0.4
3,533,079	+				-0.3
3,533,082	+				-1.8
3,533,094	+				+1.4
3,533,094	+				+3.0
3,533,102	-				-1.9
3,533,102	-				-1.3
3,533,102	-				+2.0
3,533,102	-				-0.6
3,533,102	-				-1.2
3,533,110	+				-2.0
3,533,159	-				+0.0
3,533,171	+				+2.0
3,533,179	-				-0.2
3,533,204	+		BWI76_RS17035	0.10	-1.6
3,533,209	+		BWI76_RS17035	0.11	+0.3
3,533,214	+		BWI76_RS17035	0.12	-0.6
3,533,214	+		BWI76_RS17035	0.12	+0.2
3,533,214	+		BWI76_RS17035	0.12	+0.2
3,533,214	+				+3.0
3,533,214	+		BWI76_RS17035	0.12	+0.2
3,533,215	-		BWI76_RS17035	0.12	+1.0
3,533,215	-		BWI76_RS17035	0.12	+0.2
3,533,217	+		BWI76_RS17035	0.12	-3.0
3,533,219	+		BWI76_RS17035	0.13	-0.2
3,533,219	+		BWI76_RS17035	0.13	-2.2
3,533,219	+		BWI76_RS17035	0.13	-1.6
3,533,219	+		BWI76_RS17035	0.13	-0.9
3,533,219	+		BWI76_RS17035	0.13	-1.4
3,533,219	+				+2.0
3,533,219	+		BWI76_RS17035	0.13	+2.0
3,533,219	+		BWI76_RS17035	0.13	-2.4
3,533,219	+		BWI76_RS17035	0.13	+0.7
3,533,219	+		BWI76_RS17035	0.13	-2.5
3,533,219	+		BWI76_RS17035	0.13	-0.8
3,533,219	+		BWI76_RS17035	0.13	+0.1
3,533,219	+		BWI76_RS17035	0.13	-2.9
3,533,219	+		BWI76_RS17035	0.13	+0.3
3,533,219	+		BWI76_RS17035	0.13	-3.8
3,533,219	+		BWI76_RS17035	0.13	-2.8
3,533,219	+		BWI76_RS17035	0.13	-2.7
3,533,219	+		BWI76_RS17035	0.13	+0.9
3,533,219	+		BWI76_RS17035	0.13	-0.4
3,533,219	+		BWI76_RS17035	0.13	-3.1
3,533,219	+		BWI76_RS17035	0.13	-1.2
3,533,222	-		BWI76_RS17035	0.13	-2.0
3,533,222	-		BWI76_RS17035	0.13	+3.0
3,533,222	-		BWI76_RS17035	0.13	+0.4
3,533,222	-		BWI76_RS17035	0.13	+0.0
3,533,224	+		BWI76_RS17035	0.13	-0.1
3,533,224	+		BWI76_RS17035	0.13	+3.0
3,533,224	+		BWI76_RS17035	0.13	-2.6
3,533,224	+		BWI76_RS17035	0.13	-0.5
3,533,224	+		BWI76_RS17035	0.13	-2.4
3,533,224	+		BWI76_RS17035	0.13	-2.0
3,533,224	+		BWI76_RS17035	0.13	-0.7
3,533,224	+		BWI76_RS17035	0.13	-1.2
3,533,224	+		BWI76_RS17035	0.13	-3.5
3,533,224	+		BWI76_RS17035	0.13	-2.3
3,533,224	+		BWI76_RS17035	0.13	-0.6
3,533,224	+		BWI76_RS17035	0.13	-0.1
3,533,224	+		BWI76_RS17035	0.13	-0.4
3,533,224	+		BWI76_RS17035	0.13	-1.3
3,533,224	+		BWI76_RS17035	0.13	-0.3
3,533,224	+		BWI76_RS17035	0.13	+3.6
3,533,224	+		BWI76_RS17035	0.13	+0.2
3,533,224	+		BWI76_RS17035	0.13	-2.3
3,533,225	-		BWI76_RS17035	0.14	-1.1
3,533,225	-		BWI76_RS17035	0.14	-3.0
3,533,225	-		BWI76_RS17035	0.14	+1.0
3,533,225	-				+3.0
3,533,227	-		BWI76_RS17035	0.14	-1.2
3,533,227	-		BWI76_RS17035	0.14	-1.5
3,533,232	-		BWI76_RS17035	0.15	-3.5
3,533,232	-		BWI76_RS17035	0.15	-2.1
3,533,232	-		BWI76_RS17035	0.15	-0.3
3,533,232	-		BWI76_RS17035	0.15	-1.5
3,533,232	-		BWI76_RS17035	0.15	-1.5
3,533,232	-		BWI76_RS17035	0.15	+3.0
3,533,255	+		BWI76_RS17035	0.18	-2.0
3,533,255	+		BWI76_RS17035	0.18	-1.1
3,533,255	+		BWI76_RS17035	0.18	-1.7
3,533,261	+		BWI76_RS17035	0.19	-2.4
3,533,262	+		BWI76_RS17035	0.20	+0.6
3,533,263	-		BWI76_RS17035	0.20	+3.0
3,533,268	+		BWI76_RS17035	0.20	-2.0
3,533,268	+		BWI76_RS17035	0.20	+0.0
3,533,281	-		BWI76_RS17035	0.23	-2.7
3,533,294	+				+3.0
3,533,309	-		BWI76_RS17035	0.27	+1.0
3,533,309	-		BWI76_RS17035	0.27	-0.6
3,533,309	-		BWI76_RS17035	0.27	-0.5
3,533,350	-		BWI76_RS17035	0.33	+0.4
3,533,365	+		BWI76_RS17035	0.36	-1.8
3,533,365	+		BWI76_RS17035	0.36	-1.0
3,533,373	-		BWI76_RS17035	0.37	-0.0
3,533,498	+		BWI76_RS17035	0.57	-3.2
3,533,545	-				-0.3
3,533,577	+		BWI76_RS17035	0.70	-3.5
3,533,582	+		BWI76_RS17035	0.70	+0.0
3,533,582	+		BWI76_RS17035	0.70	-1.6
3,533,595	-		BWI76_RS17035	0.72	-1.6
3,533,691	+		BWI76_RS17035	0.88	-1.0
3,533,762	+				-1.4
3,533,783	+				-0.1
3,533,820	-				+0.4
3,533,885	+				-0.1
3,533,898	-				-0.8
3,533,903	+				-0.3
3,533,971	-				-1.3
3,533,972	-				+3.0
3,533,974	+				-0.5
3,533,974	+				-1.7
3,533,974	+				+0.5
3,533,979	+				-0.6
3,533,982	-				-0.3
3,533,982	-				+0.4
3,533,987	-				-1.6
3,533,987	-				+0.3
3,533,987	-				+3.0
3,533,987	-				-1.1
3,533,999	+				-0.4
3,534,025	+				+1.5
3,534,026	-				-0.2
3,534,026	-				-0.2
3,534,054	+				-0.9
3,534,054	+				-0.1
3,534,056	+				-0.9
3,534,064	-				-0.3
3,534,128	+				+0.1
3,534,128	+				-0.7
3,534,128	+				-1.5
3,534,136	-				-1.3
3,534,136	-				-3.0
3,534,152	-				+0.5
3,534,176	+				+0.0
3,534,183	-				+0.2
3,534,204	+				+0.2
3,534,212	-				-0.7
3,534,256	+				-1.1
3,534,264	-				+1.5
3,534,264	-				+0.2
3,534,322	-		BWI76_RS17040	0.14	+1.8
3,534,334	-		BWI76_RS17040	0.19	-0.1
3,534,342	+		BWI76_RS17040	0.22	-0.2
3,534,392	+		BWI76_RS17040	0.43	-1.2
3,534,392	+		BWI76_RS17040	0.43	-0.2
3,534,400	-		BWI76_RS17040	0.46	+1.8
3,534,400	-		BWI76_RS17040	0.46	+1.0
3,534,400	-		BWI76_RS17040	0.46	+0.7
3,534,414	-		BWI76_RS17040	0.51	+1.2
3,534,414	-		BWI76_RS17040	0.51	-0.5
3,534,424	-		BWI76_RS17040	0.55	+0.8
3,534,471	+		BWI76_RS17040	0.74	-1.7
3,534,654	+				+0.3
3,534,654	+				-0.2
3,534,654	+				+0.3
3,534,654	+				+0.9
3,534,662	-				-1.4
3,534,708	-				+0.3