Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16265

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16260 and BWI76_RS16265 are separated by 74 nucleotidesBWI76_RS16265 and BWI76_RS16270 overlap by 11 nucleotides BWI76_RS16260: BWI76_RS16260 - two-component sensor histidine kinase, at 3,372,842 to 3,374,143 _RS16260 BWI76_RS16265: BWI76_RS16265 - DNA replication terminus site-binding protein, at 3,374,218 to 3,375,150 _RS16265 BWI76_RS16270: BWI76_RS16270 - fumarate hydratase, class II, at 3,375,140 to 3,376,540 _RS16270 Position (kb) 3374 3375 3376Strain fitness (log2 ratio) -3 -2 -1 0 1at 3373.360 kb on - strand, within BWI76_RS16260at 3374.038 kb on + strandat 3374.965 kb on + strand, within BWI76_RS16265at 3375.238 kb on + strandat 3375.706 kb on + strand, within BWI76_RS16270at 3376.030 kb on + strand, within BWI76_RS16270at 3376.146 kb on + strand, within BWI76_RS16270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
remove
3,373,360 - BWI76_RS16260 0.40 +0.7
3,374,038 + +1.0
3,374,965 + BWI76_RS16265 0.80 +0.1
3,375,238 + -1.7
3,375,706 + BWI76_RS16270 0.40 -1.1
3,376,030 + BWI76_RS16270 0.64 -0.6
3,376,146 + BWI76_RS16270 0.72 -3.1

Or see this region's nucleotide sequence