Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11105

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11100 and BWI76_RS11105 are separated by 143 nucleotidesBWI76_RS11105 and BWI76_RS11110 are separated by 2 nucleotides BWI76_RS11100: BWI76_RS11100 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 2,340,607 to 2,341,848 _RS11100 BWI76_RS11105: BWI76_RS11105 - aminodeoxychorismate lyase, at 2,341,992 to 2,342,801 _RS11105 BWI76_RS11110: BWI76_RS11110 - cell division protein YceG, at 2,342,804 to 2,343,826 _RS11110 Position (kb) 2341 2342 2343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2341.302 kb on + strand, within BWI76_RS11100at 2341.592 kb on + strand, within BWI76_RS11100at 2341.637 kb on + strand, within BWI76_RS11100at 2341.781 kb on + strandat 2341.842 kb on + strandat 2342.422 kb on - strand, within BWI76_RS11105at 2342.551 kb on + strand, within BWI76_RS11105at 2342.551 kb on + strand, within BWI76_RS11105at 2343.218 kb on + strand, within BWI76_RS11110at 2343.252 kb on - strand, within BWI76_RS11110

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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2,341,302 + BWI76_RS11100 0.56 -0.3
2,341,592 + BWI76_RS11100 0.79 -0.2
2,341,637 + BWI76_RS11100 0.83 -0.5
2,341,781 + -0.3
2,341,842 + +0.4
2,342,422 - BWI76_RS11105 0.53 -0.4
2,342,551 + BWI76_RS11105 0.69 -1.1
2,342,551 + BWI76_RS11105 0.69 +2.6
2,343,218 + BWI76_RS11110 0.40 -4.6
2,343,252 - BWI76_RS11110 0.44 -3.4

Or see this region's nucleotide sequence