Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10630

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
2,243,538	-		BWI76_RS10620	0.87	-2.8
2,243,595	+				-0.3
2,243,599	+				+1.0
2,243,608	+				-0.7
2,243,608	+				+2.0
2,243,618	-				-1.8
2,243,618	-				-2.7
2,243,629	+				-1.7
2,243,655	-				-0.2
2,243,710	-				-0.6
2,243,726	-				+0.8
2,243,734	+				+1.5
2,243,740	-				-0.7
2,243,742	-				-0.8
2,243,888	-		BWI76_RS10625	0.29	-1.5
2,243,956	+		BWI76_RS10625	0.41	-1.8
2,243,956	+		BWI76_RS10625	0.41	-1.5
2,243,966	+		BWI76_RS10625	0.43	-1.3
2,243,966	+		BWI76_RS10625	0.43	-0.3
2,243,966	+		BWI76_RS10625	0.43	+0.7
2,243,966	+		BWI76_RS10625	0.43	-0.4
2,243,966	+		BWI76_RS10625	0.43	-1.9
2,243,966	+		BWI76_RS10625	0.43	+1.0
2,243,966	+				+3.0
2,243,974	-		BWI76_RS10625	0.44	+1.5
2,243,974	-		BWI76_RS10625	0.44	-0.4
2,243,974	-		BWI76_RS10625	0.44	+0.2
2,243,974	-		BWI76_RS10625	0.44	+6.4
2,243,974	-		BWI76_RS10625	0.44	-1.8
2,243,974	-		BWI76_RS10625	0.44	+0.7
2,243,974	-		BWI76_RS10625	0.44	-2.0
2,244,023	-		BWI76_RS10625	0.53	-2.7
2,244,024	-		BWI76_RS10625	0.53	-1.4
2,244,024	-		BWI76_RS10625	0.53	-0.1
2,244,031	+		BWI76_RS10625	0.54	-0.4
2,244,031	+		BWI76_RS10625	0.54	-0.7
2,244,032	-		BWI76_RS10625	0.54	+1.9
2,244,039	-				+1.5
2,244,039	-		BWI76_RS10625	0.55	-1.5
2,244,039	-		BWI76_RS10625	0.55	+0.3
2,244,039	-		BWI76_RS10625	0.55	-0.1
2,244,047	-		BWI76_RS10625	0.57	-2.6
2,244,082	+		BWI76_RS10625	0.63	+2.0
2,244,087	+		BWI76_RS10625	0.64	+2.0
2,244,090	-		BWI76_RS10625	0.64	+0.0
2,244,090	-		BWI76_RS10625	0.64	-0.3
2,244,090	-		BWI76_RS10625	0.64	+0.2
2,244,090	-		BWI76_RS10625	0.64	+0.0
2,244,144	-		BWI76_RS10625	0.74	-0.1
2,244,188	+		BWI76_RS10625	0.82	+2.0
2,244,201	-		BWI76_RS10625	0.84	+0.0
2,244,212	+		BWI76_RS10625	0.86	+1.8
2,244,348	-				+3.0
2,244,387	+				-1.3
2,244,387	+				-0.8
2,244,387	+				-0.7
2,244,387	+				-0.8
2,244,387	+				-2.0
2,244,387	+				-0.4
2,244,388	+				-0.1
2,244,395	-				-1.9
2,244,395	-				+0.7
2,244,395	-				+3.0
2,244,396	-				+1.1
2,244,400	+				-0.8
2,244,400	+				-1.2
2,244,400	+				-0.1
2,244,400	+				-1.7
2,244,400	+				+2.0
2,244,400	+				-1.1
2,244,400	+				+4.6
2,244,400	+				-1.6
2,244,400	+				-0.1
2,244,400	+				+1.2
2,244,400	+				-0.3
2,244,400	+				-1.0
2,244,400	+				-1.5
2,244,400	+				-0.8
2,244,400	+				-2.1
2,244,400	+				-1.0
2,244,400	+				+0.5
2,244,400	+				-1.3
2,244,400	+				-1.4
2,244,400	+				-1.5
2,244,400	+				-1.5
2,244,400	+				+1.0
2,244,400	+				-1.8
2,244,400	+				-0.5
2,244,400	+				-3.8
2,244,400	+				-1.5
2,244,400	+				-0.4
2,244,400	+				+0.5
2,244,400	+				-0.9
2,244,400	+				+0.7
2,244,400	+				-2.6
2,244,400	+				-2.4
2,244,400	+				-2.3
2,244,400	+				-2.2
2,244,400	+				+0.0
2,244,400	+				-2.5
2,244,408	-				+0.2
2,244,408	-				-0.3
2,244,408	-				+0.7
2,244,408	-				+0.2
2,244,408	-				-1.8
2,244,408	-				-1.1
2,244,408	-				+0.2
2,244,408	-				+0.5
2,244,408	-				+3.0
2,244,408	-				+0.0
2,244,408	-				-0.3
2,244,408	-				+0.0
2,244,408	-				-0.8
2,244,408	-				+1.5
2,244,408	-				+1.5
2,244,408	-				+2.0
2,244,408	-				+3.0
2,244,408	-				-1.5
2,244,408	-				+3.0
2,244,408	-				-1.1
2,244,408	-				-1.8
2,244,408	-				+1.5
2,244,408	-				+1.5
2,244,432	+				+1.5
2,244,432	+				-1.1
2,244,432	+				+3.0
2,244,432	-				+0.0
2,244,432	-				-2.0
2,244,437	+				-0.8
2,244,437	+				+1.3
2,244,437	+				-1.4
2,244,437	+				+0.0
2,244,437	+				+0.5
2,244,437	+				-1.0
2,244,437	+				-0.7
2,244,437	+				-2.2
2,244,440	-				+1.1
2,244,442	+				+1.9
2,244,445	-				-0.1
2,244,445	-				-1.9
2,244,445	-				-0.1
2,244,445	-				+1.0
2,244,445	-				-1.2
2,244,445	-				+1.0
2,244,445	-				-1.0
2,244,445	-				-3.1
2,244,445	-				-0.1
2,244,445	-				+0.2
2,244,445	-				+0.7
2,244,445	-				+2.0
2,244,445	-				+0.6
2,244,445	-				-1.2
2,244,445	-				-1.6
2,244,445	-				-2.1
2,244,445	-				-0.7
2,244,445	-				-1.7
2,244,445	-				-1.0
2,244,445	-				-0.1
2,244,445	-				-0.8
2,244,445	-				+0.2
2,244,450	-				+3.0
2,244,450	-				-0.8
2,244,455	+				-3.1
2,244,502	+				+1.6
2,244,526	+				+1.9
2,244,535	+				+0.4
2,244,535	+				-0.8
2,244,541	+				+0.6
2,244,541	+				-1.9
2,244,542	+				+0.2
2,244,542	+				-3.2
2,244,552	+				-2.3
2,244,558	-				+1.5
2,244,564	+				-0.5
2,244,564	+				-0.8
2,244,566	+				+0.9
2,244,576	+				-3.5
2,244,600	+				-0.3
2,244,600	+				-1.3
2,244,610	+		BWI76_RS10630	0.11	-1.0
2,244,618	-		BWI76_RS10630	0.12	-2.2
2,244,619	+		BWI76_RS10630	0.12	-0.5
2,244,633	+		BWI76_RS10630	0.13	-0.8
2,244,633	+		BWI76_RS10630	0.13	-0.5
2,244,641	-				-0.3
2,244,688	+		BWI76_RS10630	0.18	-0.9
2,244,722	+		BWI76_RS10630	0.21	-3.1
2,244,800	+		BWI76_RS10630	0.28	-0.7
2,244,800	+		BWI76_RS10630	0.28	-2.8
2,244,800	+		BWI76_RS10630	0.28	-3.3
2,244,800	+		BWI76_RS10630	0.28	-1.9
2,244,800	+		BWI76_RS10630	0.28	-1.7
2,244,823	+		BWI76_RS10630	0.31	-3.4
2,244,849	-		BWI76_RS10630	0.33	-1.1
2,244,880	+		BWI76_RS10630	0.36	-1.2
2,244,880	+		BWI76_RS10630	0.36	+0.5
2,244,880	+				+0.0
2,244,883	-		BWI76_RS10630	0.36	-0.4
2,244,888	-		BWI76_RS10630	0.37	-2.1
2,244,888	-		BWI76_RS10630	0.37	+0.0
2,244,897	-		BWI76_RS10630	0.38	-0.8
2,244,897	-				+3.0
2,245,002	-		BWI76_RS10630	0.47	-2.4
2,245,002	-		BWI76_RS10630	0.47	+1.5
2,245,045	+		BWI76_RS10630	0.51	+2.0
2,245,045	+		BWI76_RS10630	0.51	-0.2
2,245,046	-		BWI76_RS10630	0.51	-0.5
2,245,056	-		BWI76_RS10630	0.52	+0.2
2,245,056	-		BWI76_RS10630	0.52	-1.5
2,245,123	+		BWI76_RS10630	0.59	-2.0
2,245,123	+		BWI76_RS10630	0.59	+0.7
2,245,131	-		BWI76_RS10630	0.59	+1.0
2,245,131	-		BWI76_RS10630	0.59	+0.5
2,245,176	+		BWI76_RS10630	0.64	-0.5
2,245,192	+		BWI76_RS10630	0.65	+0.5
2,245,200	-		BWI76_RS10630	0.66	-0.5
2,245,295	-		BWI76_RS10630	0.75	+3.0
2,245,298	-		BWI76_RS10630	0.75	+0.7
2,245,298	-		BWI76_RS10630	0.75	-1.1
2,245,298	-		BWI76_RS10630	0.75	-0.1
2,245,298	-				+0.2
2,245,298	-		BWI76_RS10630	0.75	+0.8
2,245,298	-		BWI76_RS10630	0.75	+0.2
2,245,298	-		BWI76_RS10630	0.75	-0.5
2,245,298	-		BWI76_RS10630	0.75	+0.0
2,245,298	-		BWI76_RS10630	0.75	+1.0
2,245,298	-		BWI76_RS10630	0.75	-1.3
2,245,298	-		BWI76_RS10630	0.75	+4.5
2,245,298	-		BWI76_RS10630	0.75	+0.0
2,245,300	-		BWI76_RS10630	0.75	-1.0
2,245,398	-		BWI76_RS10630	0.84	+0.0
2,245,400	+		BWI76_RS10630	0.84	-0.4
2,245,441	-		BWI76_RS10630	0.88	-1.0
2,245,441	-		BWI76_RS10630	0.88	-0.8
2,245,448	+		BWI76_RS10630	0.89	+3.0
2,245,456	-		BWI76_RS10630	0.90	-0.5
2,245,456	-		BWI76_RS10630	0.90	+2.0
2,245,522	-				-3.0
2,245,522	-				-1.2
2,245,600	+				-0.7
2,245,600	+				-1.1
2,245,601	-				+1.5
2,245,608	-				-0.3
2,245,608	-				-0.4
2,245,608	-				-2.9
2,245,608	-				+0.2
2,245,608	-				+0.1
2,245,608	-				-2.5
2,245,608	-				+0.7
2,245,613	-				-0.7
2,245,613	-				+0.6
2,245,613	-				-0.9
2,245,613	-				-0.5
2,245,613	-				-4.2
2,245,615	+				+1.5
2,245,615	+				+3.0
2,245,615	+				+0.0
2,245,615	+				+0.0
2,245,615	+				+1.5
2,245,618	-				+0.5
2,245,623	-				-2.6
2,245,623	-				-2.8
2,245,623	-				-2.8
2,245,623	-				-0.0
2,245,623	-				-0.9
2,245,623	-				+1.2
2,245,623	-				-3.8
2,245,623	-				-1.9
2,245,629	+				-3.1
2,245,629	+				-1.5
2,245,637	-				-1.1
2,245,637	-				-1.0
2,245,637	-				+1.9
2,245,637	-				+0.8
2,245,637	-				-0.4
2,245,637	-				-1.7
2,245,637	-				-3.2
2,245,670	-				+1.5
2,245,808	-				-1.9
2,245,814	-				+0.0
2,245,838	-				-1.8
2,245,883	-				-0.7
2,245,893	-				-2.5
2,245,908	+				-0.4
2,245,908	+				-0.8
2,245,914	-				+0.4
2,245,916	-				-3.1
2,245,916	-				-1.7
2,245,916	-				-0.8
2,245,916	-				-1.7
2,245,916	-				+1.6
2,245,916	-				-1.6
2,245,916	-				-0.3
2,245,916	-				-3.3
2,245,916	-				+0.7
2,245,965	+				-0.3
2,245,974	+				+0.7
2,245,977	-				-0.1
2,245,982	-				-3.1
2,246,074	+		BWI76_RS10635	0.10	+1.6