Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10605

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
2,239,140	+		BWI76_RS10600	0.51	+0.1
2,239,218	-		BWI76_RS10600	0.55	-1.5
2,239,396	+		BWI76_RS10600	0.66	+0.2
2,239,495	+		BWI76_RS10600	0.71	+1.8
2,239,604	+		BWI76_RS10600	0.78	-0.2
2,239,611	+		BWI76_RS10600	0.78	+1.0
2,239,612	-		BWI76_RS10600	0.78	-0.5
2,239,710	-		BWI76_RS10600	0.84	-1.6
2,239,710	-		BWI76_RS10600	0.84	-1.4
2,239,747	+		BWI76_RS10600	0.86	+1.6
2,239,747	-		BWI76_RS10600	0.86	-1.2
2,239,763	+		BWI76_RS10600	0.87	-0.2
2,239,809	+		BWI76_RS10600	0.90	+0.5
2,239,817	-				+2.3
2,239,827	+				-0.7
2,239,830	+				-0.7
2,239,830	+				+1.5
2,239,837	+				-0.4
2,239,872	-				-1.8
2,239,887	+				+0.7
2,239,887	+				+0.7
2,239,887	+				-0.7
2,239,887	+				-2.1
2,239,887	+				+1.2
2,239,887	+				+1.5
2,239,887	+				-1.1
2,239,887	+				+0.2
2,239,887	+				-0.0
2,239,887	+				-0.7
2,239,887	+				-0.5
2,239,887	+				+0.8
2,239,887	+				-2.9
2,239,887	+				+0.0
2,239,887	+				+0.1
2,239,887	+				+0.1
2,239,887	+				-1.8
2,239,887	+				-0.5
2,239,895	-				-1.5
2,239,895	-				-0.6
2,239,895	-				-0.5
2,239,895	-				-0.4
2,239,895	-				+2.3
2,239,895	-				+0.2
2,239,895	-				-0.1
2,239,895	-				-0.8
2,239,895	-				-0.7
2,239,895	-				-0.6
2,239,895	-				-1.4
2,239,895	-				-0.4
2,239,895	-				+1.8
2,239,895	-				+0.6
2,239,897	+				-0.2
2,239,897	+				+0.6
2,239,897	+				-3.5
2,239,897	+				+0.2
2,239,897	+				+0.9
2,239,897	+				-1.1
2,239,897	+				-0.2
2,239,897	+				-2.7
2,239,897	+				-0.9
2,239,897	+				-0.4
2,239,897	+				+0.8
2,239,897	+				-1.3
2,239,897	+				+0.1
2,239,897	+				+0.2
2,239,897	+				-0.3
2,239,897	+				-0.2
2,239,897	+				+0.3
2,239,897	+				-0.3
2,239,905	-				-0.8
2,239,905	-				+0.9
2,239,905	-				-0.1
2,239,905	-				-0.9
2,239,905	-				-0.8
2,239,905	-				-1.7
2,239,905	-				-1.8
2,239,905	-				-1.2
2,239,905	-				-0.9
2,239,905	-				-1.2
2,239,905	-				-0.3
2,239,905	-				+1.0
2,239,907	+				+0.7
2,239,912	+				-0.2
2,239,915	-				-1.1
2,239,920	+				-0.0
2,239,922	-				-0.1
2,239,937	+				-0.9
2,239,940	-				-0.7
2,239,952	+				+2.0
2,239,952	+				-0.3
2,239,952	+				-0.8
2,239,952	+				+0.3
2,239,952	+				+0.3
2,239,952	+				+0.9
2,239,960	-				-1.0
2,239,960	-				-1.0
2,239,960	-				-0.8
2,240,001	+				+0.2
2,240,016	-				-1.2
2,240,029	+				-2.2
2,240,051	-				+1.0
2,240,067	+				-2.0
2,240,086	-				-0.1
2,240,086	-				+0.3
2,240,088	+				+3.0
2,240,096	-				-3.6
2,240,096	-				+0.3
2,240,096	-				+1.4
2,240,096	-				-0.4
2,240,096	-				+0.3
2,240,104	-				-0.1
2,240,131	-		BWI76_RS10605	0.11	-0.1
2,240,182	-		BWI76_RS10605	0.18	-2.6
2,240,200	-		BWI76_RS10605	0.21	-2.3
2,240,291	+		BWI76_RS10605	0.34	+3.0
2,240,291	+		BWI76_RS10605	0.34	-1.1
2,240,299	-		BWI76_RS10605	0.35	+3.0
2,240,299	-		BWI76_RS10605	0.35	-1.2
2,240,301	+		BWI76_RS10605	0.35	+0.2
2,240,306	+		BWI76_RS10605	0.36	-2.9
2,240,306	+		BWI76_RS10605	0.36	-0.7
2,240,306	+		BWI76_RS10605	0.36	+3.0
2,240,306	+		BWI76_RS10605	0.36	+0.0
2,240,306	+		BWI76_RS10605	0.36	+1.5
2,240,306	+		BWI76_RS10605	0.36	-1.0
2,240,314	-		BWI76_RS10605	0.37	+0.5
2,240,314	-		BWI76_RS10605	0.37	-0.3
2,240,314	-		BWI76_RS10605	0.37	-0.8
2,240,314	-		BWI76_RS10605	0.37	+0.2
2,240,314	-		BWI76_RS10605	0.37	+1.5
2,240,314	-		BWI76_RS10605	0.37	-2.1
2,240,314	-		BWI76_RS10605	0.37	+0.8
2,240,314	-		BWI76_RS10605	0.37	+1.0
2,240,314	-		BWI76_RS10605	0.37	-0.4
2,240,314	-		BWI76_RS10605	0.37	+1.5
2,240,314	-		BWI76_RS10605	0.37	-0.1
2,240,314	-		BWI76_RS10605	0.37	+0.0
2,240,314	-		BWI76_RS10605	0.37	-1.7
2,240,314	-		BWI76_RS10605	0.37	-0.7
2,240,314	-		BWI76_RS10605	0.37	+0.4
2,240,314	-		BWI76_RS10605	0.37	-1.6
2,240,314	-		BWI76_RS10605	0.37	-1.7
2,240,314	-		BWI76_RS10605	0.37	-1.1
2,240,314	-		BWI76_RS10605	0.37	+0.5
2,240,314	-		BWI76_RS10605	0.37	-0.4
2,240,314	-		BWI76_RS10605	0.37	-1.8
2,240,328	+		BWI76_RS10605	0.39	-1.8
2,240,330	+		BWI76_RS10605	0.39	-1.4
2,240,330	+		BWI76_RS10605	0.39	+3.0
2,240,336	-		BWI76_RS10605	0.40	-1.5
2,240,336	-		BWI76_RS10605	0.40	+0.7
2,240,336	-		BWI76_RS10605	0.40	+0.0
2,240,336	-		BWI76_RS10605	0.40	+3.0
2,240,338	-		BWI76_RS10605	0.40	-2.9
2,240,338	-		BWI76_RS10605	0.40	-0.7
2,240,338	-		BWI76_RS10605	0.40	-1.7
2,240,338	-		BWI76_RS10605	0.40	-1.0
2,240,338	-		BWI76_RS10605	0.40	-1.0
2,240,382	-		BWI76_RS10605	0.47	-0.5
2,240,384	+				+2.0
2,240,389	-		BWI76_RS10605	0.48	-1.5
2,240,392	-		BWI76_RS10605	0.48	+0.2
2,240,392	-				+3.0
2,240,392	-		BWI76_RS10605	0.48	+0.7
2,240,397	-		BWI76_RS10605	0.49	-0.7
2,240,397	-		BWI76_RS10605	0.49	-7.6
2,240,404	-		BWI76_RS10605	0.50	+1.0
2,240,413	+		BWI76_RS10605	0.51	-1.0
2,240,426	+		BWI76_RS10605	0.53	-0.8
2,240,426	+				-0.1
2,240,426	+		BWI76_RS10605	0.53	+1.2
2,240,426	+		BWI76_RS10605	0.53	-0.3
2,240,426	+		BWI76_RS10605	0.53	+0.5
2,240,434	-		BWI76_RS10605	0.54	-3.2
2,240,434	-		BWI76_RS10605	0.54	+0.5
2,240,434	-		BWI76_RS10605	0.54	-2.4
2,240,442	+		BWI76_RS10605	0.55	+3.0
2,240,462	+		BWI76_RS10605	0.58	-1.2
2,240,462	+		BWI76_RS10605	0.58	+0.9
2,240,467	-		BWI76_RS10605	0.59	+2.0
2,240,470	-		BWI76_RS10605	0.59	-2.2
2,240,471	+		BWI76_RS10605	0.59	+0.5
2,240,471	+		BWI76_RS10605	0.59	-0.8
2,240,471	+		BWI76_RS10605	0.59	-0.7
2,240,479	-		BWI76_RS10605	0.60	-1.9
2,240,525	+		BWI76_RS10605	0.67	-3.8
2,240,525	+		BWI76_RS10605	0.67	+3.0
2,240,525	+		BWI76_RS10605	0.67	+3.0
2,240,525	+		BWI76_RS10605	0.67	+0.5
2,240,525	+		BWI76_RS10605	0.67	+1.5
2,240,525	+		BWI76_RS10605	0.67	-0.1
2,240,533	-		BWI76_RS10605	0.68	+1.5
2,240,578	+		BWI76_RS10605	0.75	+2.0
2,240,603	+				+1.5
2,240,603	+		BWI76_RS10605	0.78	+2.0
2,240,611	+		BWI76_RS10605	0.79	+3.0
2,240,637	-		BWI76_RS10605	0.83	-1.0
2,240,639	-		BWI76_RS10605	0.83	-0.3
2,240,643	+		BWI76_RS10605	0.84	+2.0
2,240,687	+				-0.6
2,240,687	+				+0.1
2,240,687	+				-1.3
2,240,687	+				-2.3
2,240,687	+				-2.1
2,240,687	+				+3.0
2,240,687	+				-2.2
2,240,695	+				+1.4
2,240,716	-				+0.3
2,240,813	-				+0.4
2,240,813	-				+0.1
2,240,817	-				+2.8
2,240,846	+				+3.0
2,240,846	+				-1.0
2,240,856	+				-0.3
2,240,856	+				+3.0
2,240,857	-				-0.0
2,240,872	-				-1.3
2,240,895	-				+0.2
2,240,918	+				+0.7
2,240,924	+				-0.3
2,240,938	-				+2.0
2,240,938	-				-1.5
2,240,951	+				+3.0
2,240,953	+				+1.0
2,240,953	+				-0.1
2,240,953	+				+0.2
2,240,953	+				-1.0
2,240,953	+				-0.4
2,240,953	+				+2.0
2,240,953	+				-1.2
2,240,961	-				+0.0
2,240,961	-				-1.4
2,240,961	-				-0.4
2,240,981	-				-0.2
2,240,997	+				-0.8
2,241,296	+				+0.2
2,241,314	+				-0.5
2,241,323	+				-2.8
2,241,331	-				+1.5
2,241,331	-				-0.3
2,241,353	+				-1.7
2,241,373	-				-0.8
2,241,379	+				+0.7
2,241,402	+				-2.0
2,241,435	+				-1.4
2,241,435	+				-0.0
2,241,525	+				+1.5
2,241,525	+		BWI76_RS10610	0.14	-0.1
2,241,525	+		BWI76_RS10610	0.14	+1.0
2,241,531	+		BWI76_RS10610	0.15	-0.9
2,241,531	+		BWI76_RS10610	0.15	-0.9
2,241,531	+		BWI76_RS10610	0.15	+0.6
2,241,578	+		BWI76_RS10610	0.23	-0.0
2,241,586	-		BWI76_RS10610	0.25	+3.0
2,241,611	+		BWI76_RS10610	0.29	-2.8
2,241,616	+		BWI76_RS10610	0.30	+0.2
2,241,725	+		BWI76_RS10610	0.50	+0.5