Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09350

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,960,366	+		BWI76_RS09340	0.56	+0.2
1,960,416	+		BWI76_RS09340	0.62	-0.8
1,960,429	-		BWI76_RS09340	0.63	-2.0
1,960,434	-		BWI76_RS09340	0.64	+0.3
1,960,554	-		BWI76_RS09340	0.77	-0.0
1,960,618	-		BWI76_RS09340	0.84	-0.4
1,960,701	-				-2.0
1,960,815	-		BWI76_RS09345	0.11	+0.4
1,960,950	+		BWI76_RS09345	0.33	+1.8
1,960,955	+		BWI76_RS09345	0.33	-2.2
1,960,969	+		BWI76_RS09345	0.36	+0.9
1,960,977	-		BWI76_RS09345	0.37	-1.1
1,960,979	+		BWI76_RS09345	0.37	-0.4
1,960,987	-		BWI76_RS09345	0.39	-0.5
1,960,987	-		BWI76_RS09345	0.39	+0.5
1,961,024	+		BWI76_RS09345	0.45	-3.7
1,961,032	-		BWI76_RS09345	0.46	+0.4
1,961,037	-		BWI76_RS09345	0.47	+0.5
1,961,037	-		BWI76_RS09345	0.47	-2.0
1,961,043	+		BWI76_RS09345	0.48	+0.5
1,961,043	+		BWI76_RS09345	0.48	+1.1
1,961,043	+		BWI76_RS09345	0.48	+1.5
1,961,043	+		BWI76_RS09345	0.48	-2.4
1,961,043	+		BWI76_RS09345	0.48	-0.8
1,961,044	-		BWI76_RS09345	0.48	+0.8
1,961,051	-		BWI76_RS09345	0.49	-3.0
1,961,051	-		BWI76_RS09345	0.49	+0.6
1,961,060	-		BWI76_RS09345	0.51	-2.8
1,961,063	+		BWI76_RS09345	0.51	-0.5
1,961,071	-		BWI76_RS09345	0.53	-2.1
1,961,101	+		BWI76_RS09345	0.57	+3.1
1,961,115	+		BWI76_RS09345	0.60	-0.5
1,961,115	+		BWI76_RS09345	0.60	-0.0
1,961,115	+		BWI76_RS09345	0.60	-3.3
1,961,115	+		BWI76_RS09345	0.60	-1.8
1,961,118	+		BWI76_RS09345	0.60	-0.9
1,961,121	-		BWI76_RS09345	0.61	+0.1
1,961,123	-		BWI76_RS09345	0.61	-1.6
1,961,125	+		BWI76_RS09345	0.61	-2.3
1,961,126	-		BWI76_RS09345	0.62	-0.3
1,961,149	+		BWI76_RS09345	0.65	-2.6
1,961,196	+		BWI76_RS09345	0.73	-3.3
1,961,196	+		BWI76_RS09345	0.73	-2.1
1,961,196	+		BWI76_RS09345	0.73	-1.6
1,961,201	+		BWI76_RS09345	0.74	-1.5
1,961,204	-		BWI76_RS09345	0.74	-0.7
1,961,204	-		BWI76_RS09345	0.74	+0.5
1,961,208	+		BWI76_RS09345	0.75	-2.7
1,961,208	+		BWI76_RS09345	0.75	-1.7
1,961,208	+				+3.1
1,961,208	+		BWI76_RS09345	0.75	+1.0
1,961,208	+		BWI76_RS09345	0.75	+0.3
1,961,209	+		BWI76_RS09345	0.75	-0.2
1,961,216	-		BWI76_RS09345	0.76	+1.5
1,961,216	-				+2.4
1,961,216	-		BWI76_RS09345	0.76	-1.8
1,961,216	-		BWI76_RS09345	0.76	-0.7
1,961,216	-		BWI76_RS09345	0.76	-1.7
1,961,240	+		BWI76_RS09345	0.80	-1.5
1,961,276	+		BWI76_RS09345	0.86	-0.3
1,961,277	+		BWI76_RS09345	0.86	+0.8
1,961,277	+		BWI76_RS09345	0.86	-0.2
1,961,277	+		BWI76_RS09345	0.86	-0.7
1,961,277	+		BWI76_RS09345	0.86	+0.1
1,961,278	+		BWI76_RS09345	0.87	+1.8
1,961,448	+				+1.5
1,961,503	+				-1.7
1,961,503	+				-1.3
1,961,503	+				-3.6
1,961,503	+				-2.3
1,961,517	+				-2.2
1,961,522	+				-1.7
1,961,525	-				+0.3
1,961,556	+				-2.4
1,961,564	-				-0.1
1,961,615	+		BWI76_RS09350	0.12	-1.5
1,961,621	+		BWI76_RS09350	0.12	+1.7
1,961,629	-		BWI76_RS09350	0.13	-0.4
1,961,633	+		BWI76_RS09350	0.13	-3.2
1,961,633	+		BWI76_RS09350	0.13	-0.1
1,961,633	+		BWI76_RS09350	0.13	-2.5
1,961,635	+		BWI76_RS09350	0.13	-0.3
1,961,635	+		BWI76_RS09350	0.13	-0.9
1,961,641	-		BWI76_RS09350	0.13	-1.0
1,961,641	-		BWI76_RS09350	0.13	+1.0
1,961,643	-		BWI76_RS09350	0.13	-3.0
1,961,643	-		BWI76_RS09350	0.13	+3.1
1,961,643	-		BWI76_RS09350	0.13	-1.1
1,961,668	+		BWI76_RS09350	0.14	-1.0
1,961,675	-		BWI76_RS09350	0.15	+1.7
1,961,700	+		BWI76_RS09350	0.16	-2.4
1,961,708	-		BWI76_RS09350	0.16	+0.8
1,961,716	+		BWI76_RS09350	0.17	-0.7
1,961,721	+		BWI76_RS09350	0.17	+0.7
1,961,724	-		BWI76_RS09350	0.17	+2.1
1,961,736	+		BWI76_RS09350	0.17	+0.2
1,961,743	+		BWI76_RS09350	0.18	-1.2
1,961,760	+		BWI76_RS09350	0.19	-1.4
1,961,798	+		BWI76_RS09350	0.20	+0.6
1,961,816	+		BWI76_RS09350	0.21	+0.5
1,961,869	+		BWI76_RS09350	0.24	-1.9
1,961,893	+		BWI76_RS09350	0.25	-0.3
1,962,034	+		BWI76_RS09350	0.31	+0.0
1,962,093	-		BWI76_RS09350	0.34	-0.3
1,962,100	+		BWI76_RS09350	0.34	+0.1
1,962,217	+		BWI76_RS09350	0.40	-0.1
1,962,308	-		BWI76_RS09350	0.44	-1.8
1,962,395	+		BWI76_RS09350	0.48	+0.1
1,962,424	-		BWI76_RS09350	0.49	-1.5
1,962,530	+		BWI76_RS09350	0.54	+0.4
1,962,601	+		BWI76_RS09350	0.57	-0.4
1,962,790	-		BWI76_RS09350	0.66	-1.6
1,962,792	+		BWI76_RS09350	0.66	+0.2
1,962,813	+		BWI76_RS09350	0.67	-0.3
1,962,834	-		BWI76_RS09350	0.68	+0.1
1,962,895	+		BWI76_RS09350	0.71	+0.5
1,962,895	+		BWI76_RS09350	0.71	-0.3
1,962,907	+		BWI76_RS09350	0.71	+1.0
1,962,971	+		BWI76_RS09350	0.74	-1.0
1,962,981	+		BWI76_RS09350	0.75	-2.7
1,962,981	+		BWI76_RS09350	0.75	-1.8
1,962,981	+		BWI76_RS09350	0.75	-0.9
1,962,981	+		BWI76_RS09350	0.75	-1.9
1,962,981	+		BWI76_RS09350	0.75	-1.6
1,962,981	+		BWI76_RS09350	0.75	-2.7
1,962,988	+		BWI76_RS09350	0.75	-1.1
1,962,989	-		BWI76_RS09350	0.75	-0.7
1,962,989	-		BWI76_RS09350	0.75	-1.3
1,962,989	-		BWI76_RS09350	0.75	+2.1
1,963,005	+		BWI76_RS09350	0.76	-0.6
1,963,007	+		BWI76_RS09350	0.76	-0.8
1,963,012	+		BWI76_RS09350	0.76	-0.9
1,963,015	-		BWI76_RS09350	0.76	-0.2
1,963,015	-		BWI76_RS09350	0.76	-2.7
1,963,017	+		BWI76_RS09350	0.76	-1.8
1,963,026	-		BWI76_RS09350	0.77	-1.7
1,963,039	+		BWI76_RS09350	0.77	-0.5
1,963,047	-		BWI76_RS09350	0.78	-1.5
1,963,047	-		BWI76_RS09350	0.78	-2.2
1,963,059	+		BWI76_RS09350	0.78	-0.7
1,963,059	+		BWI76_RS09350	0.78	-1.9
1,963,059	+		BWI76_RS09350	0.78	+1.5
1,963,067	-		BWI76_RS09350	0.79	-0.8
1,963,145	+		BWI76_RS09350	0.82	-0.0
1,963,145	+		BWI76_RS09350	0.82	-2.6
1,963,153	-		BWI76_RS09350	0.83	-0.8
1,963,160	-		BWI76_RS09350	0.83	+0.3
1,963,163	-		BWI76_RS09350	0.83	-0.2
1,963,191	+		BWI76_RS09350	0.84	-1.1
1,963,191	+		BWI76_RS09350	0.84	-0.6
1,963,191	+		BWI76_RS09350	0.84	+0.8
1,963,191	+		BWI76_RS09350	0.84	-1.3
1,963,202	+		BWI76_RS09350	0.85	+1.8
1,963,204	-		BWI76_RS09350	0.85	+3.1
1,963,206	+		BWI76_RS09350	0.85	-1.8
1,963,214	-		BWI76_RS09350	0.85	-1.4
1,963,329	+				-3.5
1,963,336	+				-0.0
1,963,351	+				-1.5
1,963,407	+				+2.3
1,963,407	+				-0.9
1,963,407	+				+0.2
1,963,407	+				+1.2
1,963,417	-				-2.4
1,963,474	+				-0.8
1,963,489	+				-1.4
1,963,489	+				-1.4
1,963,489	+				-0.1
1,963,489	+				-1.7
1,963,567	+				-1.1
1,963,567	+				+0.4
1,963,575	-				-1.7
1,963,597	+				-2.3
1,963,598	+				+0.2
1,963,604	+				+0.7
1,963,609	+				-0.3
1,963,610	+				-0.2
1,963,610	+				-1.3
1,963,630	-		BWI76_RS09355	0.10	-0.1
1,963,636	+				+2.6
1,963,639	-		BWI76_RS09355	0.11	+3.1
1,963,668	+		BWI76_RS09355	0.16	-0.3
1,963,668	+		BWI76_RS09355	0.16	-1.8
1,963,668	+		BWI76_RS09355	0.16	-0.3
1,963,676	-		BWI76_RS09355	0.17	+0.3
1,963,676	-		BWI76_RS09355	0.17	-1.4
1,963,676	-		BWI76_RS09355	0.17	+0.3
1,963,676	-		BWI76_RS09355	0.17	-1.0
1,963,686	+		BWI76_RS09355	0.18	-0.5
1,963,690	+		BWI76_RS09355	0.19	-2.1
1,963,690	+		BWI76_RS09355	0.19	-1.7
1,963,697	+		BWI76_RS09355	0.20	+0.5
1,963,707	-		BWI76_RS09355	0.21	-1.8
1,963,712	+		BWI76_RS09355	0.22	-1.4
1,963,713	+		BWI76_RS09355	0.22	-1.2
1,963,720	-		BWI76_RS09355	0.23	-0.2
1,963,733	+		BWI76_RS09355	0.25	-0.1
1,963,733	+		BWI76_RS09355	0.25	-0.2
1,963,735	+		BWI76_RS09355	0.25	-1.7
1,963,735	+		BWI76_RS09355	0.25	-1.8
1,963,743	+		BWI76_RS09355	0.26	-1.3
1,963,759	+		BWI76_RS09355	0.29	+1.2
1,963,787	-		BWI76_RS09355	0.33	-0.3
1,963,792	+		BWI76_RS09355	0.33	-0.5
1,963,792	+		BWI76_RS09355	0.33	+0.3
1,963,800	-		BWI76_RS09355	0.34	-1.6
1,963,800	-		BWI76_RS09355	0.34	+1.3
1,963,800	-		BWI76_RS09355	0.34	+0.3
1,963,854	-		BWI76_RS09355	0.42	-1.1
1,963,856	+		BWI76_RS09355	0.42	-0.7
1,963,877	+		BWI76_RS09355	0.45	-1.7
1,963,890	+		BWI76_RS09355	0.47	-0.2
1,963,940	+		BWI76_RS09355	0.55	+0.5
1,964,165	+		BWI76_RS09355	0.87	-0.3
1,964,167	+		BWI76_RS09355	0.87	-0.7
1,964,173	-		BWI76_RS09355	0.88	-2.1
1,964,177	+		BWI76_RS09355	0.88	-1.0
1,964,177	+		BWI76_RS09355	0.88	+0.3
1,964,182	+		BWI76_RS09355	0.89	+0.6
1,964,196	+				+1.4
1,964,289	+				-0.4
1,964,297	-				+0.9
1,964,518	-		BWI76_RS09360	0.23	-1.5
1,964,518	-		BWI76_RS09360	0.23	+0.1