Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08890

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,870,610	-		BWI76_RS08880	0.90	+0.6
1,870,685	+				+0.5
1,870,722	-				+0.9
1,870,960	-		BWI76_RS08885	0.37	+1.5
1,870,960	-		BWI76_RS08885	0.37	+0.6
1,871,089	+		BWI76_RS08885	0.56	+0.5
1,871,272	-		BWI76_RS08885	0.83	-3.7
1,871,297	-		BWI76_RS08885	0.87	+0.4
1,871,431	+				-0.8
1,871,431	+				+0.5
1,871,431	+				-0.1
1,871,439	-				-1.8
1,871,439	-				+0.2
1,871,568	-		BWI76_RS08890	0.12	+0.1
1,871,587	+		BWI76_RS08890	0.14	-3.2
1,871,593	-		BWI76_RS08890	0.15	-1.0
1,871,597	+		BWI76_RS08890	0.15	-2.9
1,871,597	+				+3.1
1,871,605	-		BWI76_RS08890	0.16	-1.3
1,871,736	+		BWI76_RS08890	0.30	-0.1
1,871,736	+		BWI76_RS08890	0.30	-0.0
1,871,736	-		BWI76_RS08890	0.30	-0.6
1,871,741	+		BWI76_RS08890	0.31	+0.8
1,871,766	-		BWI76_RS08890	0.33	-2.6
1,871,777	-		BWI76_RS08890	0.35	+2.5
1,871,853	+		BWI76_RS08890	0.43	-0.5
1,871,862	-		BWI76_RS08890	0.44	-2.5
1,871,863	-		BWI76_RS08890	0.44	-1.8
1,871,863	-		BWI76_RS08890	0.44	-1.4
1,871,869	-		BWI76_RS08890	0.44	+0.5
1,871,885	+		BWI76_RS08890	0.46	-0.7
1,871,885	+		BWI76_RS08890	0.46	+0.3
1,871,885	+		BWI76_RS08890	0.46	+1.0
1,871,893	+		BWI76_RS08890	0.47	+0.3
1,871,893	-		BWI76_RS08890	0.47	-2.9
1,871,893	-		BWI76_RS08890	0.47	+2.7
1,871,898	+		BWI76_RS08890	0.48	-1.7
1,871,898	+		BWI76_RS08890	0.48	+3.4
1,871,898	+		BWI76_RS08890	0.48	-2.4
1,871,898	+		BWI76_RS08890	0.48	-1.6
1,871,898	+		BWI76_RS08890	0.48	-1.2
1,871,898	+		BWI76_RS08890	0.48	+1.9
1,871,898	+		BWI76_RS08890	0.48	+2.3
1,871,898	+		BWI76_RS08890	0.48	-3.4
1,871,898	+		BWI76_RS08890	0.48	+1.0
1,871,898	+		BWI76_RS08890	0.48	-2.6
1,871,900	-		BWI76_RS08890	0.48	-0.8
1,871,906	-		BWI76_RS08890	0.48	-0.7
1,871,906	-		BWI76_RS08890	0.48	-1.7
1,871,906	-		BWI76_RS08890	0.48	-2.4
1,871,906	-		BWI76_RS08890	0.48	-1.2
1,871,906	-		BWI76_RS08890	0.48	-0.1
1,871,906	-		BWI76_RS08890	0.48	-3.3
1,871,906	-		BWI76_RS08890	0.48	+0.6
1,871,906	-		BWI76_RS08890	0.48	-0.8
1,871,906	-		BWI76_RS08890	0.48	+1.1
1,871,906	-		BWI76_RS08890	0.48	+3.1
1,871,906	-		BWI76_RS08890	0.48	-0.7
1,871,906	-		BWI76_RS08890	0.48	-0.1
1,871,908	+		BWI76_RS08890	0.49	-2.6
1,871,908	+		BWI76_RS08890	0.49	-1.6
1,871,908	-		BWI76_RS08890	0.49	-1.0
1,871,910	+		BWI76_RS08890	0.49	+0.5
1,871,910	+		BWI76_RS08890	0.49	+0.2
1,871,910	+		BWI76_RS08890	0.49	-1.0
1,871,910	+		BWI76_RS08890	0.49	-1.3
1,871,916	-		BWI76_RS08890	0.50	+1.1
1,871,916	-		BWI76_RS08890	0.50	-0.9
1,871,916	-		BWI76_RS08890	0.50	-2.3
1,871,916	-		BWI76_RS08890	0.50	-0.9
1,871,916	-		BWI76_RS08890	0.50	-1.9
1,871,918	-		BWI76_RS08890	0.50	-0.7
1,871,918	-		BWI76_RS08890	0.50	-2.5
1,871,918	-		BWI76_RS08890	0.50	-0.6
1,871,918	-		BWI76_RS08890	0.50	-3.6
1,871,961	-		BWI76_RS08890	0.54	-0.4
1,871,963	-		BWI76_RS08890	0.55	-0.3
1,871,967	+		BWI76_RS08890	0.55	-0.7
1,871,967	+		BWI76_RS08890	0.55	+1.7
1,871,967	+		BWI76_RS08890	0.55	+0.2
1,871,967	+		BWI76_RS08890	0.55	-0.4
1,871,975	-		BWI76_RS08890	0.56	+3.1
1,871,985	-		BWI76_RS08890	0.57	+2.1
1,871,987	+		BWI76_RS08890	0.57	-0.1
1,871,999	+		BWI76_RS08890	0.59	-0.4
1,871,999	+		BWI76_RS08890	0.59	-2.3
1,871,999	+		BWI76_RS08890	0.59	-1.0
1,871,999	+		BWI76_RS08890	0.59	-1.6
1,871,999	+		BWI76_RS08890	0.59	-3.6
1,871,999	+		BWI76_RS08890	0.59	-0.7
1,872,004	+		BWI76_RS08890	0.59	-0.5
1,872,007	-		BWI76_RS08890	0.59	-0.8
1,872,007	-		BWI76_RS08890	0.59	-2.4
1,872,007	-		BWI76_RS08890	0.59	+1.7
1,872,007	-		BWI76_RS08890	0.59	+2.1
1,872,009	+		BWI76_RS08890	0.60	+1.1
1,872,045	+		BWI76_RS08890	0.64	+0.5
1,872,045	+		BWI76_RS08890	0.64	-1.1
1,872,045	+		BWI76_RS08890	0.64	+3.1
1,872,046	+		BWI76_RS08890	0.64	-0.9
1,872,053	-		BWI76_RS08890	0.64	-2.6
1,872,053	-		BWI76_RS08890	0.64	-3.1
1,872,079	+		BWI76_RS08890	0.67	+3.1
1,872,088	-		BWI76_RS08890	0.68	+0.3
1,872,100	-		BWI76_RS08890	0.69	-1.6
1,872,172	+		BWI76_RS08890	0.77	+0.3
1,872,180	-		BWI76_RS08890	0.78	-0.4
1,872,180	-		BWI76_RS08890	0.78	+1.5
1,872,191	-		BWI76_RS08890	0.79	+0.1
1,872,223	-		BWI76_RS08890	0.83	+3.1
1,872,225	+				+3.1
1,872,225	+		BWI76_RS08890	0.83	-0.5
1,872,225	+		BWI76_RS08890	0.83	+3.1
1,872,225	+		BWI76_RS08890	0.83	-0.4
1,872,225	+				+1.1
1,872,225	+		BWI76_RS08890	0.83	+3.1
1,872,233	-		BWI76_RS08890	0.84	+1.5
1,872,233	-		BWI76_RS08890	0.84	+1.5
1,872,233	-		BWI76_RS08890	0.84	+3.1
1,872,233	-		BWI76_RS08890	0.84	+3.1
1,872,233	-		BWI76_RS08890	0.84	-1.0
1,872,233	-		BWI76_RS08890	0.84	-1.4
1,872,233	-		BWI76_RS08890	0.84	-2.1
1,872,233	-		BWI76_RS08890	0.84	-1.8
1,872,233	-		BWI76_RS08890	0.84	-2.4
1,872,233	-		BWI76_RS08890	0.84	+1.4
1,872,248	-		BWI76_RS08890	0.85	-3.0
1,872,263	+		BWI76_RS08890	0.87	-0.1
1,872,279	+				+3.1
1,872,296	-				+3.1
1,872,302	+				+1.5
1,872,306	-				+0.3
1,872,397	+				-2.8
1,872,400	+				+0.7
1,872,400	+				-0.1
1,872,408	-				+0.1
1,872,473	+				-0.4
1,872,473	-				-1.3
1,872,473	-				-2.4
1,872,473	-				+3.1
1,872,478	-				-0.3
1,872,478	-				+0.3
1,872,514	+				+3.1
1,872,636	+				-1.8
1,872,636	+				-2.3
1,872,636	+				-1.9
1,872,636	+				-2.0
1,872,648	+				+1.1
1,872,648	+				-0.7
1,872,648	+				-2.6
1,872,648	+				-3.4
1,872,653	+				-4.0
1,872,655	+				-0.0
1,872,655	+				+2.3
1,872,655	+				-1.9
1,872,655	+				-3.9
1,872,655	+				-2.2
1,872,655	+				-0.9
1,872,655	+				-1.8
1,872,655	+				-1.0
1,872,655	+				-2.0
1,872,655	+				-2.5
1,872,655	+				+2.1
1,872,655	+				-0.1
1,872,656	-				-1.2
1,872,656	-				-3.0
1,872,659	+				-1.1
1,872,674	+				-1.0
1,872,674	+				+3.1
1,872,674	+				-1.5
1,872,674	+				-2.1
1,872,674	+				+2.1
1,872,682	-				+3.1
1,872,710	+				-1.0
1,872,723	+				-1.6
1,872,723	+				-3.0
1,872,727	+				-1.4
1,872,729	-				-1.1
1,872,734	+				-1.5
1,872,734	+				-0.4
1,872,736	+				+1.9
1,872,741	+				-0.9
1,872,741	+				-0.5
1,872,741	+				-0.1
1,872,741	+				+3.6
1,872,742	-				-0.6
1,872,746	+				-1.8
1,872,746	+				+0.4
1,872,746	+				-1.8
1,872,746	+				-0.1
1,872,746	+				-1.3
1,872,746	+				-0.9
1,872,746	+				-0.5
1,872,746	+				-0.7
1,872,746	+				+0.9
1,872,746	+				+0.2
1,872,746	+				-1.7
1,872,749	-				+0.7
1,872,754	-				+3.1
1,872,754	-				-1.8
1,872,842	+				-0.6
1,872,844	+				-1.4
1,872,844	+				-0.7
1,872,844	+				-0.5
1,872,844	+				+0.8
1,872,844	+				+0.7
1,872,844	+				+0.3
1,872,852	-				-2.6
1,872,852	-				+0.3
1,872,903	-		BWI76_RS08895	0.14	-0.6
1,872,913	+		BWI76_RS08895	0.14	-0.6
1,872,920	+		BWI76_RS08895	0.15	-2.3
1,872,920	+		BWI76_RS08895	0.15	-1.1
1,872,932	+		BWI76_RS08895	0.16	+0.1
1,872,940	-		BWI76_RS08895	0.16	-0.3
1,872,971	+		BWI76_RS08895	0.19	-0.6
1,872,971	+		BWI76_RS08895	0.19	+1.0
1,872,971	+		BWI76_RS08895	0.19	-0.0
1,872,971	+		BWI76_RS08895	0.19	-4.2
1,872,979	-		BWI76_RS08895	0.19	-2.5
1,873,036	+		BWI76_RS08895	0.24	-1.4
1,873,037	+		BWI76_RS08895	0.24	-0.4
1,873,039	-		BWI76_RS08895	0.24	-1.0
1,873,045	-		BWI76_RS08895	0.24	-1.9
1,873,070	+		BWI76_RS08895	0.26	+1.7
1,873,070	+		BWI76_RS08895	0.26	-1.0
1,873,078	-		BWI76_RS08895	0.27	+0.5
1,873,088	+		BWI76_RS08895	0.28	+0.6
1,873,088	+		BWI76_RS08895	0.28	+0.9
1,873,092	+		BWI76_RS08895	0.28	-0.1
1,873,102	+		BWI76_RS08895	0.29	+1.1
1,873,103	+		BWI76_RS08895	0.29	+0.7
1,873,174	+		BWI76_RS08895	0.34	-1.7
1,873,230	-		BWI76_RS08895	0.38	-0.8
1,873,235	-		BWI76_RS08895	0.39	+2.1
1,873,254	-		BWI76_RS08895	0.40	-0.4
1,873,254	-		BWI76_RS08895	0.40	-1.4
1,873,297	-		BWI76_RS08895	0.43	-1.1
1,873,308	+		BWI76_RS08895	0.44	-2.9
1,873,308	+		BWI76_RS08895	0.44	-1.0
1,873,308	+		BWI76_RS08895	0.44	-0.5
1,873,310	-		BWI76_RS08895	0.44	+1.6
1,873,313	+		BWI76_RS08895	0.44	+0.7
1,873,315	+		BWI76_RS08895	0.45	+0.1
1,873,315	+		BWI76_RS08895	0.45	-0.4
1,873,315	-		BWI76_RS08895	0.45	-2.0
1,873,315	-		BWI76_RS08895	0.45	-1.1
1,873,316	-		BWI76_RS08895	0.45	+0.1
1,873,316	-		BWI76_RS08895	0.45	-0.1
1,873,321	-		BWI76_RS08895	0.45	-3.6
1,873,346	+		BWI76_RS08895	0.47	+2.1
1,873,354	-		BWI76_RS08895	0.48	-1.3
1,873,354	-		BWI76_RS08895	0.48	-0.3
1,873,356	+		BWI76_RS08895	0.48	-2.9
1,873,356	+				+0.7
1,873,356	+		BWI76_RS08895	0.48	+3.1
1,873,356	+		BWI76_RS08895	0.48	-1.6
1,873,356	+		BWI76_RS08895	0.48	+3.1
1,873,356	+		BWI76_RS08895	0.48	+0.1
1,873,356	+		BWI76_RS08895	0.48	-2.6
1,873,364	-		BWI76_RS08895	0.48	-0.6
1,873,364	-		BWI76_RS08895	0.48	-1.6
1,873,364	-		BWI76_RS08895	0.48	-2.0
1,873,364	-		BWI76_RS08895	0.48	-1.9
1,873,364	-		BWI76_RS08895	0.48	+2.1
1,873,364	-		BWI76_RS08895	0.48	-3.3
1,873,364	-		BWI76_RS08895	0.48	-0.1
1,873,364	-		BWI76_RS08895	0.48	-1.6
1,873,364	-		BWI76_RS08895	0.48	-0.5
1,873,364	-		BWI76_RS08895	0.48	-2.8
1,873,364	-		BWI76_RS08895	0.48	-0.7
1,873,364	-		BWI76_RS08895	0.48	+3.3
1,873,364	-		BWI76_RS08895	0.48	-0.4
1,873,364	-		BWI76_RS08895	0.48	+0.7
1,873,364	-		BWI76_RS08895	0.48	-2.4
1,873,364	-		BWI76_RS08895	0.48	+0.1
1,873,364	-		BWI76_RS08895	0.48	-1.8
1,873,364	-		BWI76_RS08895	0.48	-2.0
1,873,364	-		BWI76_RS08895	0.48	-1.0
1,873,364	-		BWI76_RS08895	0.48	-2.5
1,873,364	-		BWI76_RS08895	0.48	-1.1
1,873,364	-		BWI76_RS08895	0.48	-1.0
1,873,364	-		BWI76_RS08895	0.48	-0.5
1,873,364	-		BWI76_RS08895	0.48	-0.9
1,873,364	-		BWI76_RS08895	0.48	+1.0
1,873,364	-		BWI76_RS08895	0.48	-3.8
1,873,364	-		BWI76_RS08895	0.48	-0.1
1,873,364	-		BWI76_RS08895	0.48	-3.3
1,873,364	-		BWI76_RS08895	0.48	-1.6
1,873,364	-		BWI76_RS08895	0.48	-1.3
1,873,364	-		BWI76_RS08895	0.48	-2.2
1,873,364	-		BWI76_RS08895	0.48	-2.2
1,873,364	-		BWI76_RS08895	0.48	-2.0
1,873,364	-		BWI76_RS08895	0.48	-0.9
1,873,364	-		BWI76_RS08895	0.48	-1.2
1,873,364	-		BWI76_RS08895	0.48	-2.5