Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08450

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08440 and BWI76_RS08445 are separated by 185 nucleotidesBWI76_RS08445 and BWI76_RS08450 are separated by 9 nucleotidesBWI76_RS08450 and BWI76_RS08455 are separated by 11 nucleotides BWI76_RS08440: BWI76_RS08440 - hypothetical protein, at 1,786,734 to 1,787,636 _RS08440 BWI76_RS08445: BWI76_RS08445 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,787,822 to 1,788,424 _RS08445 BWI76_RS08450: BWI76_RS08450 - fumarate hydratase, at 1,788,434 to 1,790,086 _RS08450 BWI76_RS08455: BWI76_RS08455 - glutaminase, at 1,790,098 to 1,791,099 _RS08455 Position (kb) 1788 1789 1790 1791Strain fitness (log2 ratio) -2 -1 0 1 2at 1787.614 kb on + strandat 1787.792 kb on - strandat 1787.913 kb on - strand, within BWI76_RS08445at 1788.016 kb on + strand, within BWI76_RS08445at 1788.018 kb on + strand, within BWI76_RS08445at 1788.026 kb on - strand, within BWI76_RS08445at 1788.186 kb on + strand, within BWI76_RS08445at 1788.221 kb on - strand, within BWI76_RS08445at 1788.280 kb on - strand, within BWI76_RS08445at 1788.432 kb on + strandat 1788.585 kb on - strandat 1788.646 kb on + strand, within BWI76_RS08450at 1788.761 kb on - strand, within BWI76_RS08450at 1789.050 kb on + strand, within BWI76_RS08450at 1789.139 kb on + strand, within BWI76_RS08450at 1789.254 kb on + strandat 1789.254 kb on + strand, within BWI76_RS08450at 1789.496 kb on - strand, within BWI76_RS08450at 1789.680 kb on + strand, within BWI76_RS08450at 1790.600 kb on + strand, within BWI76_RS08455at 1790.609 kb on - strand, within BWI76_RS08455at 1790.811 kb on + strand, within BWI76_RS08455at 1790.930 kb on - strand, within BWI76_RS08455at 1790.942 kb on + strand, within BWI76_RS08455at 1791.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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1,787,614 + +1.2
1,787,792 - +0.1
1,787,913 - BWI76_RS08445 0.15 +1.2
1,788,016 + BWI76_RS08445 0.32 -1.1
1,788,018 + BWI76_RS08445 0.33 +1.5
1,788,026 - BWI76_RS08445 0.34 +2.5
1,788,186 + BWI76_RS08445 0.60 +0.5
1,788,221 - BWI76_RS08445 0.66 +0.3
1,788,280 - BWI76_RS08445 0.76 -0.1
1,788,432 + -2.1
1,788,585 - +0.6
1,788,646 + BWI76_RS08450 0.13 -0.4
1,788,761 - BWI76_RS08450 0.20 +0.2
1,789,050 + BWI76_RS08450 0.37 +0.4
1,789,139 + BWI76_RS08450 0.43 +0.9
1,789,254 + +0.2
1,789,254 + BWI76_RS08450 0.50 +0.2
1,789,496 - BWI76_RS08450 0.64 -0.2
1,789,680 + BWI76_RS08450 0.75 -1.9
1,790,600 + BWI76_RS08455 0.50 -0.2
1,790,609 - BWI76_RS08455 0.51 -0.4
1,790,811 + BWI76_RS08455 0.71 +0.7
1,790,930 - BWI76_RS08455 0.83 -2.0
1,790,942 + BWI76_RS08455 0.84 +0.1
1,791,044 + -0.2

Or see this region's nucleotide sequence