Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08090

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,713,500	+		BWI76_RS08085	0.58	+0.5
1,713,500	+		BWI76_RS08085	0.58	-3.0
1,713,535	+		BWI76_RS08085	0.60	-0.1
1,713,535	+		BWI76_RS08085	0.60	+1.0
1,713,560	+		BWI76_RS08085	0.61	-0.7
1,713,562	+		BWI76_RS08085	0.61	+0.5
1,713,588	+		BWI76_RS08085	0.63	+0.1
1,713,588	+		BWI76_RS08085	0.63	-0.2
1,713,588	+		BWI76_RS08085	0.63	+1.3
1,713,590	+		BWI76_RS08085	0.63	+0.7
1,713,596	-		BWI76_RS08085	0.63	-0.7
1,713,596	-		BWI76_RS08085	0.63	-0.5
1,713,596	-		BWI76_RS08085	0.63	+0.3
1,713,631	+		BWI76_RS08085	0.65	-1.3
1,713,636	+		BWI76_RS08085	0.66	-0.2
1,713,639	-		BWI76_RS08085	0.66	-1.0
1,713,679	+		BWI76_RS08085	0.68	+0.6
1,713,693	+		BWI76_RS08085	0.69	-1.1
1,713,727	-		BWI76_RS08085	0.71	-2.1
1,713,729	+		BWI76_RS08085	0.71	-1.1
1,713,773	-		BWI76_RS08085	0.73	+0.7
1,713,780	-		BWI76_RS08085	0.74	-2.1
1,713,789	+		BWI76_RS08085	0.74	-0.3
1,713,797	-		BWI76_RS08085	0.75	-1.3
1,713,808	-		BWI76_RS08085	0.75	+0.9
1,713,831	+		BWI76_RS08085	0.76	-0.2
1,713,831	+		BWI76_RS08085	0.76	+1.1
1,713,831	+		BWI76_RS08085	0.76	-3.5
1,713,831	+		BWI76_RS08085	0.76	-0.2
1,713,831	+		BWI76_RS08085	0.76	-3.7
1,713,839	-		BWI76_RS08085	0.77	+0.1
1,713,839	-		BWI76_RS08085	0.77	-2.3
1,713,839	-		BWI76_RS08085	0.77	+0.3
1,713,839	-		BWI76_RS08085	0.77	-1.3
1,713,839	-		BWI76_RS08085	0.77	+0.1
1,713,854	+		BWI76_RS08085	0.78	+0.1
1,713,861	+		BWI76_RS08085	0.78	+0.3
1,713,866	+		BWI76_RS08085	0.78	-0.3
1,713,879	-		BWI76_RS08085	0.79	-0.8
1,713,898	-		BWI76_RS08085	0.80	+0.1
1,714,025	+		BWI76_RS08085	0.87	-1.9
1,714,026	+		BWI76_RS08085	0.87	-0.4
1,714,033	-				-0.6
1,714,034	-		BWI76_RS08085	0.88	-2.9
1,714,065	-		BWI76_RS08085	0.89	-0.4
1,714,077	-				-0.8
1,714,080	+				-0.1
1,714,087	+				-0.1
1,714,098	+				-1.5
1,714,101	+				-0.5
1,714,126	+				+0.5
1,714,126	+				-1.5
1,714,126	+				-1.0
1,714,126	+				-2.6
1,714,126	+				-1.1
1,714,126	+				+1.1
1,714,126	+				+0.9
1,714,126	-				-3.2
1,714,133	-				-1.8
1,714,134	-				-0.5
1,714,134	-				-0.5
1,714,134	-				-0.8
1,714,134	-				+0.6
1,714,146	+				-2.4
1,714,146	+				-0.9
1,714,154	-				-1.7
1,714,157	+				-1.5
1,714,157	+				-1.0
1,714,163	-				-0.1
1,714,165	-				-1.9
1,714,165	-				-3.7
1,714,165	-				-0.2
1,714,166	+				-1.7
1,714,166	+				+3.0
1,714,170	+				-0.8
1,714,170	+				-3.3
1,714,170	+				-1.0
1,714,170	+				-0.3
1,714,170	+				-0.0
1,714,170	+				-0.7
1,714,170	+				-1.7
1,714,170	+				-0.3
1,714,170	+				+1.0
1,714,170	+				-0.7
1,714,170	+				-2.5
1,714,170	+				-0.9
1,714,170	+				+0.4
1,714,170	+				-2.1
1,714,170	+				-2.1
1,714,170	+				-2.4
1,714,170	+				-1.2
1,714,170	+				-0.8
1,714,170	+				-0.1
1,714,170	+				+1.1
1,714,170	+				+0.5
1,714,170	+				-0.0
1,714,170	+				+2.6
1,714,170	+				-1.9
1,714,170	+				-1.9
1,714,171	+				+0.9
1,714,171	+				-2.9
1,714,174	-				-1.3
1,714,174	-				-0.5
1,714,174	-				+1.3
1,714,174	-				-1.3
1,714,174	-				+0.1
1,714,174	-				-0.1
1,714,178	-				-2.8
1,714,178	-				-1.8
1,714,178	-				+1.0
1,714,178	-				-1.6
1,714,178	-				-0.8
1,714,178	-				-0.4
1,714,178	-				-0.2
1,714,178	-				-0.3
1,714,178	-				+0.8
1,714,178	-				+0.0
1,714,178	-				+0.5
1,714,178	-				-0.6
1,714,178	-				-0.3
1,714,178	-				-1.6
1,714,178	-				-2.7
1,714,178	-				-0.3
1,714,178	-				+1.3
1,714,178	-				+0.3
1,714,178	-				-0.6
1,714,178	-				-1.1
1,714,178	-				+0.1
1,714,178	-				-1.1
1,714,178	-				-1.0
1,714,178	-				-3.3
1,714,178	-				+1.8
1,714,178	-				-1.4
1,714,178	-				-4.0
1,714,178	-				-0.8
1,714,178	-				+1.0
1,714,178	-				-2.0
1,714,178	-				-0.0
1,714,179	-				-1.7
1,714,179	-				-2.7
1,714,179	-				-0.4
1,714,189	+				-0.5
1,714,189	+				-0.3
1,714,189	+				-0.2
1,714,189	+				-1.2
1,714,189	+				-0.6
1,714,194	+				-0.0
1,714,194	+				+1.0
1,714,195	+				+0.7
1,714,197	-				-2.2
1,714,197	-				+1.4
1,714,197	-				-0.6
1,714,197	-				-0.7
1,714,197	-				-1.1
1,714,197	-				+1.4
1,714,197	-				-0.7
1,714,197	-				-0.3
1,714,197	-				-0.2
1,714,197	-				+0.2
1,714,197	-				+0.7
1,714,202	-				+0.7
1,714,203	-				-0.2
1,714,203	-				+0.1
1,714,206	+				+0.9
1,714,206	+				-2.1
1,714,209	-				+0.4
1,714,212	-				-0.8
1,714,213	+				-2.6
1,714,213	+				+1.2
1,714,214	-				-1.0
1,714,324	+				-1.3
1,714,325	-				+0.1
1,714,326	+				-0.8
1,714,326	+				+2.1
1,714,333	-				+0.4
1,714,334	-				+0.2
1,714,347	+				-0.3
1,714,377	+				+0.4
1,714,377	+				+0.3
1,714,385	-				+0.1
1,714,390	-				-1.7
1,714,419	+				+0.7
1,714,461	+				-1.3
1,714,475	+				-0.6
1,714,480	-				-0.3
1,714,483	-				+3.0
1,714,568	+		BWI76_RS08090	0.15	+1.4
1,714,572	+		BWI76_RS08090	0.15	-0.6
1,714,576	-		BWI76_RS08090	0.15	-2.5
1,714,610	+		BWI76_RS08090	0.17	-2.0
1,714,618	-		BWI76_RS08090	0.18	+2.0
1,714,620	+		BWI76_RS08090	0.18	+1.4
1,714,628	-				-0.6
1,714,629	-		BWI76_RS08090	0.19	-1.1
1,714,676	-		BWI76_RS08090	0.21	-2.4
1,714,700	+		BWI76_RS08090	0.23	+0.7
1,714,765	+		BWI76_RS08090	0.27	-1.9
1,714,765	+		BWI76_RS08090	0.27	+3.0
1,714,770	+		BWI76_RS08090	0.27	-2.3
1,714,773	-		BWI76_RS08090	0.27	+0.4
1,714,775	+		BWI76_RS08090	0.27	-2.5
1,714,775	+		BWI76_RS08090	0.27	-0.4
1,714,785	+		BWI76_RS08090	0.28	-1.5
1,714,792	+		BWI76_RS08090	0.28	+1.0
1,714,792	+		BWI76_RS08090	0.28	+0.4
1,714,800	-		BWI76_RS08090	0.29	+3.0
1,714,807	-		BWI76_RS08090	0.29	-0.9
1,714,807	-		BWI76_RS08090	0.29	-0.2
1,714,809	+		BWI76_RS08090	0.29	+0.7
1,714,809	+		BWI76_RS08090	0.29	-0.6
1,714,809	+		BWI76_RS08090	0.29	-2.9
1,714,809	+		BWI76_RS08090	0.29	+2.0
1,714,809	+		BWI76_RS08090	0.29	+1.4
1,714,810	+		BWI76_RS08090	0.29	-2.6
1,714,810	+		BWI76_RS08090	0.29	+0.7
1,714,810	+		BWI76_RS08090	0.29	+1.4
1,714,810	+		BWI76_RS08090	0.29	-0.5
1,714,811	+		BWI76_RS08090	0.29	-1.6
1,714,812	-		BWI76_RS08090	0.30	-0.5
1,714,812	-		BWI76_RS08090	0.30	-1.8
1,714,815	+		BWI76_RS08090	0.30	+3.0
1,714,815	+		BWI76_RS08090	0.30	-2.0
1,714,817	-		BWI76_RS08090	0.30	-0.0
1,714,817	-		BWI76_RS08090	0.30	+0.6
1,714,817	-		BWI76_RS08090	0.30	+0.4
1,714,818	-		BWI76_RS08090	0.30	-0.9
1,714,818	-		BWI76_RS08090	0.30	-0.6
1,714,822	-		BWI76_RS08090	0.30	+0.7
1,714,823	-		BWI76_RS08090	0.30	-2.9
1,714,823	-		BWI76_RS08090	0.30	-0.2
1,714,824	+		BWI76_RS08090	0.30	-0.6
1,714,827	-		BWI76_RS08090	0.30	-2.2
1,714,828	-		BWI76_RS08090	0.30	-1.3
1,714,829	+				+1.4
1,714,838	+		BWI76_RS08090	0.31	-0.8
1,714,843	+		BWI76_RS08090	0.31	-0.8
1,714,846	-		BWI76_RS08090	0.32	-0.0
1,714,874	+		BWI76_RS08090	0.33	+0.2
1,714,879	+		BWI76_RS08090	0.34	-3.3
1,714,896	-		BWI76_RS08090	0.35	-2.3
1,714,914	-		BWI76_RS08090	0.36	+2.8
1,714,922	+		BWI76_RS08090	0.36	-0.6
1,714,923	+		BWI76_RS08090	0.36	+0.8
1,714,923	+		BWI76_RS08090	0.36	-0.8
1,714,923	+		BWI76_RS08090	0.36	-0.9
1,714,923	+		BWI76_RS08090	0.36	-1.1
1,714,931	-		BWI76_RS08090	0.37	-0.9
1,714,932	-		BWI76_RS08090	0.37	-3.2
1,714,932	-		BWI76_RS08090	0.37	-2.6
1,714,984	+		BWI76_RS08090	0.40	-0.9
1,715,015	-		BWI76_RS08090	0.42	-1.3
1,715,017	+		BWI76_RS08090	0.42	+0.7
1,715,025	-		BWI76_RS08090	0.42	+2.0
1,715,027	-		BWI76_RS08090	0.42	-0.7
1,715,034	-		BWI76_RS08090	0.43	+3.3
1,715,087	-		BWI76_RS08090	0.46	+3.0
1,715,097	+		BWI76_RS08090	0.47	+0.1
1,715,132	+		BWI76_RS08090	0.49	-0.8
1,715,163	+		BWI76_RS08090	0.51	-1.3
1,715,265	+		BWI76_RS08090	0.57	+3.0
1,715,275	+		BWI76_RS08090	0.57	-0.5
1,715,349	-		BWI76_RS08090	0.62	-1.6
1,715,432	+		BWI76_RS08090	0.67	+0.7
1,715,443	+		BWI76_RS08090	0.67	-1.9
1,715,443	+		BWI76_RS08090	0.67	-1.6
1,715,451	-				-0.3
1,715,451	-		BWI76_RS08090	0.68	-1.8
1,715,465	+		BWI76_RS08090	0.69	-1.5
1,715,473	-		BWI76_RS08090	0.69	+0.2
1,715,473	-		BWI76_RS08090	0.69	-1.6
1,715,473	-		BWI76_RS08090	0.69	-1.5
1,715,490	+		BWI76_RS08090	0.70	-0.3
1,715,490	+		BWI76_RS08090	0.70	-1.5
1,715,498	-		BWI76_RS08090	0.71	-1.9
1,715,500	+		BWI76_RS08090	0.71	-2.0
1,715,508	-		BWI76_RS08090	0.71	-2.6
1,715,508	-		BWI76_RS08090	0.71	+3.0
1,715,508	-		BWI76_RS08090	0.71	+1.0
1,715,508	-		BWI76_RS08090	0.71	+2.0
1,715,544	+		BWI76_RS08090	0.73	-2.4
1,715,555	+		BWI76_RS08090	0.74	+1.2
1,715,555	+		BWI76_RS08090	0.74	+0.5
1,715,563	-		BWI76_RS08090	0.74	-0.0
1,715,591	+		BWI76_RS08090	0.76	+1.7
1,715,624	+		BWI76_RS08090	0.78	+0.4
1,715,624	+		BWI76_RS08090	0.78	-3.0
1,715,624	+		BWI76_RS08090	0.78	-0.2
1,715,877	+				+0.7
1,715,877	+				+1.9
1,715,877	+				+0.4
1,715,882	+				-1.3
1,715,885	-				-0.7
1,716,054	+				-0.3
1,716,058	+				+0.4
1,716,069	-				-0.3
1,716,179	+				+0.4
1,716,184	+				-1.4
1,716,184	+				-1.5
1,716,253	+				-1.6
1,716,260	+				+0.6
1,716,292	-				+2.0
1,716,339	-				-0.8
1,716,342	-				+3.0
1,716,372	-				+0.5
1,716,373	-				+2.6
1,716,373	-				+1.0
1,716,385	-				-2.2
1,716,396	-				+0.5
1,716,407	+				+1.4
1,716,407	+				-0.9
1,716,415	-				+0.5
1,716,460	-		BWI76_RS08095	0.13	-0.6
1,716,462	+		BWI76_RS08095	0.13	+0.0
1,716,530	-		BWI76_RS08095	0.22	-0.5
1,716,537	-		BWI76_RS08095	0.23	+0.2
1,716,590	-		BWI76_RS08095	0.31	+2.0
1,716,599	+		BWI76_RS08095	0.32	+0.8
1,716,626	-		BWI76_RS08095	0.36	+1.3
1,716,638	-		BWI76_RS08095	0.37	+0.3
1,716,677	+		BWI76_RS08095	0.43	-0.8
1,716,685	-		BWI76_RS08095	0.44	-0.2
1,716,779	+		BWI76_RS08095	0.57	-2.0
1,716,780	-		BWI76_RS08095	0.57	+1.5
1,716,787	-		BWI76_RS08095	0.58	+0.3
1,716,787	-		BWI76_RS08095	0.58	-0.8
1,716,787	-		BWI76_RS08095	0.58	+1.3
1,716,839	-		BWI76_RS08095	0.65	-1.6
1,716,927	-		BWI76_RS08095	0.77	+1.2
1,716,976	+		BWI76_RS08095	0.84	-2.8