Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07095

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07090 and BWI76_RS07095 are separated by 137 nucleotidesBWI76_RS07095 and BWI76_RS07100 overlap by 1 nucleotides BWI76_RS07090: BWI76_RS07090 - cysteine--tRNA ligase, at 1,490,052 to 1,491,437 _RS07090 BWI76_RS07095: BWI76_RS07095 - ribosome-associated protein, at 1,491,575 to 1,491,787 _RS07095 BWI76_RS07100: BWI76_RS07100 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 1,491,787 to 1,492,653 _RS07100 Position (kb) 1491 1492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1491.487 kb on + strandat 1491.487 kb on + strandat 1491.586 kb on + strandat 1491.609 kb on - strand, within BWI76_RS07095at 1491.674 kb on - strand, within BWI76_RS07095at 1491.730 kb on - strand, within BWI76_RS07095at 1491.731 kb on - strand, within BWI76_RS07095at 1491.803 kb on - strandat 1491.813 kb on - strandat 1491.822 kb on + strandat 1491.822 kb on + strandat 1492.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB
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1,491,487 + -0.1
1,491,487 + +0.2
1,491,586 + +2.0
1,491,609 - BWI76_RS07095 0.16 +1.2
1,491,674 - BWI76_RS07095 0.46 -0.0
1,491,730 - BWI76_RS07095 0.73 +0.2
1,491,731 - BWI76_RS07095 0.73 -1.9
1,491,803 - -0.7
1,491,813 - -0.7
1,491,822 + -4.3
1,491,822 + -1.2
1,492,770 - +0.6

Or see this region's nucleotide sequence