Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07040

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,479,448	+		BWI76_RS07035	0.32	-2.3
1,479,472	+		BWI76_RS07035	0.34	+0.2
1,479,494	+		BWI76_RS07035	0.36	+2.0
1,479,502	-		BWI76_RS07035	0.36	+0.2
1,479,519	+		BWI76_RS07035	0.38	+0.0
1,479,640	+		BWI76_RS07035	0.47	-0.7
1,479,640	-		BWI76_RS07035	0.47	-1.0
1,479,648	+		BWI76_RS07035	0.48	+0.4
1,479,684	-				+1.9
1,479,703	+				+2.2
1,479,810	+		BWI76_RS07035	0.61	-3.4
1,479,880	+		BWI76_RS07035	0.67	-0.8
1,479,924	+		BWI76_RS07035	0.70	-0.1
1,479,932	-		BWI76_RS07035	0.71	-0.8
1,479,940	+		BWI76_RS07035	0.72	-0.6
1,479,950	-		BWI76_RS07035	0.72	+0.8
1,479,965	+		BWI76_RS07035	0.74	-1.1
1,479,973	-		BWI76_RS07035	0.74	-0.4
1,479,973	-		BWI76_RS07035	0.74	+0.3
1,480,000	+		BWI76_RS07035	0.77	+0.6
1,480,008	-		BWI76_RS07035	0.77	-1.0
1,480,061	+		BWI76_RS07035	0.81	-0.3
1,480,172	-				-0.9
1,480,175	+				+0.8
1,480,183	-				-1.9
1,480,183	-				-0.6
1,480,183	-				+1.0
1,480,190	-				+0.7
1,480,218	+				-1.5
1,480,223	+				-2.3
1,480,223	+				+0.0
1,480,231	-				+0.2
1,480,231	-				-2.9
1,480,245	-				-1.4
1,480,245	-				-0.5
1,480,248	+				-1.0
1,480,248	+				-0.6
1,480,248	+				-0.0
1,480,248	+				-0.2
1,480,254	+				-0.6
1,480,254	+				-2.2
1,480,256	-				-0.3
1,480,261	+				-1.8
1,480,267	-				-1.9
1,480,267	-				+0.2
1,480,267	-				-1.9
1,480,269	-				+0.0
1,480,269	-				+0.7
1,480,269	-				-1.9
1,480,285	+				-2.1
1,480,355	-				+0.4
1,480,358	-				-0.2
1,480,382	-				-0.1
1,480,394	+				+2.3
1,480,409	-				-1.3
1,480,412	-				-1.2
1,480,416	+		BWI76_RS07040	0.10	+0.6
1,480,430	+		BWI76_RS07040	0.11	-0.2
1,480,437	+		BWI76_RS07040	0.12	-1.0
1,480,437	+		BWI76_RS07040	0.12	-0.0
1,480,437	+		BWI76_RS07040	0.12	-0.7
1,480,450	+		BWI76_RS07040	0.13	+0.9
1,480,468	-		BWI76_RS07040	0.15	+0.1
1,480,473	+		BWI76_RS07040	0.15	-0.3
1,480,473	+		BWI76_RS07040	0.15	-0.1
1,480,473	+		BWI76_RS07040	0.15	-1.8
1,480,486	-		BWI76_RS07040	0.17	+0.4
1,480,572	-		BWI76_RS07040	0.25	+0.6
1,480,574	+		BWI76_RS07040	0.25	-1.1
1,480,577	-		BWI76_RS07040	0.25	-1.3
1,480,577	-		BWI76_RS07040	0.25	+1.4
1,480,582	-		BWI76_RS07040	0.26	-1.9
1,480,592	+		BWI76_RS07040	0.27	-1.7
1,480,598	+		BWI76_RS07040	0.27	+0.2
1,480,600	-		BWI76_RS07040	0.28	-1.0
1,480,600	-		BWI76_RS07040	0.28	-2.0
1,480,610	-		BWI76_RS07040	0.28	-0.9
1,480,620	-		BWI76_RS07040	0.29	+1.8
1,480,625	-		BWI76_RS07040	0.30	+0.6
1,480,627	+		BWI76_RS07040	0.30	-3.1
1,480,720	-		BWI76_RS07040	0.39	-0.7
1,480,729	-		BWI76_RS07040	0.40	-3.0
1,480,818	+		BWI76_RS07040	0.48	-0.2
1,480,876	+		BWI76_RS07040	0.54	-0.4
1,480,894	+		BWI76_RS07040	0.56	+0.5
1,480,925	-		BWI76_RS07040	0.58	-0.6
1,480,942	+		BWI76_RS07040	0.60	-0.2
1,480,952	+		BWI76_RS07040	0.61	-0.6
1,481,010	+		BWI76_RS07040	0.67	-0.4
1,481,010	+		BWI76_RS07040	0.67	+0.3
1,481,010	+		BWI76_RS07040	0.67	+0.8
1,481,018	-		BWI76_RS07040	0.67	+0.0
1,481,018	-		BWI76_RS07040	0.67	-0.4
1,481,018	-		BWI76_RS07040	0.67	+0.3
1,481,036	-		BWI76_RS07040	0.69	-0.7
1,481,093	-		BWI76_RS07040	0.74	-0.9
1,481,093	-		BWI76_RS07040	0.74	-0.3
1,481,097	+		BWI76_RS07040	0.75	-0.0
1,481,097	+		BWI76_RS07040	0.75	+0.3
1,481,097	+		BWI76_RS07040	0.75	+2.4
1,481,097	+		BWI76_RS07040	0.75	+1.2
1,481,097	+				+3.5
1,481,097	+		BWI76_RS07040	0.75	-0.3
1,481,097	+		BWI76_RS07040	0.75	-0.4
1,481,097	+		BWI76_RS07040	0.75	+1.7
1,481,097	+		BWI76_RS07040	0.75	-0.5
1,481,105	-		BWI76_RS07040	0.76	+0.3
1,481,105	-		BWI76_RS07040	0.76	+0.2
1,481,105	-		BWI76_RS07040	0.76	-0.9
1,481,105	-		BWI76_RS07040	0.76	-1.1
1,481,105	-		BWI76_RS07040	0.76	-1.8
1,481,105	-		BWI76_RS07040	0.76	-2.7
1,481,105	-		BWI76_RS07040	0.76	-0.7
1,481,209	-		BWI76_RS07040	0.86	-2.2
1,481,216	-		BWI76_RS07040	0.86	-3.9
1,481,218	-		BWI76_RS07040	0.86	+0.7
1,481,227	-		BWI76_RS07040	0.87	-1.0
1,481,242	-		BWI76_RS07040	0.89	-1.6
1,481,242	-		BWI76_RS07040	0.89	-1.3
1,481,254	+		BWI76_RS07040	0.90	+0.2
1,481,254	+		BWI76_RS07040	0.90	+0.8
1,481,254	+		BWI76_RS07040	0.90	+1.4
1,481,259	+				-0.2
1,481,262	-				-0.2
1,481,262	-				-1.3
1,481,262	-				-3.0
1,481,262	-				+0.2
1,481,262	-				-1.7
1,481,262	-				-1.0
1,481,262	-				-2.0
1,481,262	-				-3.5
1,481,267	-				-1.5
1,481,272	-				-0.8
1,481,294	+				+0.2
1,481,295	+				+3.0
1,481,300	+				+3.0
1,481,302	-				-1.8
1,481,305	+				+0.4
1,481,305	+				-0.9
1,481,305	+				-2.9
1,481,308	+				-1.2
1,481,308	+				+0.9
1,481,308	-				-1.9
1,481,308	-				+0.4
1,481,308	-				+0.4
1,481,313	-				-1.3
1,481,316	-				-0.4
1,481,316	-				+1.0
1,481,316	-				-0.3
1,481,316	-				-0.5
1,481,316	-				-1.7
1,481,316	-				+2.2
1,481,323	+				-0.5
1,481,330	-				+0.2
1,481,333	+				-1.6
1,481,339	+				-1.6
1,481,341	+				+0.4
1,481,347	-				-3.0
1,481,361	-				-0.6
1,481,361	-				-2.1
1,481,381	+				-0.0
1,481,381	+				-0.3
1,481,381	+				+1.0
1,481,386	+				-1.3
1,481,389	-				+0.5
1,481,389	-				-0.8
1,481,389	-				+1.9
1,481,389	-				-0.4
1,481,389	-				-0.7
1,481,394	-				+0.4
1,481,394	-				-0.6
1,481,394	-				+0.3
1,481,394	-				-0.2
1,481,394	-				-1.2
1,481,394	-				-1.8
1,481,394	-				+0.1
1,481,509	-				+1.0
1,481,600	+				+0.4
1,481,625	+				+0.5
1,481,625	+				-2.2
1,481,722	+				+0.1
1,481,722	+				+1.0
1,481,743	+				+0.3
1,481,838	+				-1.3
1,481,838	+				+2.5
1,481,846	-		BWI76_RS07045	0.10	-3.0
1,481,863	+		BWI76_RS07045	0.11	+1.1
1,481,882	+		BWI76_RS07045	0.12	-2.6
1,481,936	+		BWI76_RS07045	0.16	+0.2
1,481,941	+		BWI76_RS07045	0.16	-0.7
1,481,944	-		BWI76_RS07045	0.16	-1.9
1,481,952	+		BWI76_RS07045	0.17	-0.6
1,481,952	+		BWI76_RS07045	0.17	+4.8
1,481,960	-		BWI76_RS07045	0.17	+0.1
1,481,960	-		BWI76_RS07045	0.17	-2.0
1,481,960	-		BWI76_RS07045	0.17	-2.5
1,481,960	-		BWI76_RS07045	0.17	-0.9
1,481,967	-		BWI76_RS07045	0.17	-0.8
1,481,971	+		BWI76_RS07045	0.18	+0.6
1,481,971	+		BWI76_RS07045	0.18	-1.0
1,481,977	+		BWI76_RS07045	0.18	-0.8
1,482,072	-		BWI76_RS07045	0.24	-3.1
1,482,197	-		BWI76_RS07045	0.31	+0.5