Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07025

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,476,128	-		BWI76_RS07020	0.32	-0.0
1,476,141	-		BWI76_RS07020	0.33	-0.9
1,476,233	-		BWI76_RS07020	0.40	-1.0
1,476,313	-		BWI76_RS07020	0.46	-1.0
1,476,315	-		BWI76_RS07020	0.46	-1.5
1,476,422	+		BWI76_RS07020	0.54	-0.7
1,476,425	-		BWI76_RS07020	0.54	-0.1
1,476,430	-				-0.3
1,476,435	+		BWI76_RS07020	0.55	-0.8
1,476,443	-		BWI76_RS07020	0.56	-0.1
1,476,443	-		BWI76_RS07020	0.56	-0.5
1,476,443	-		BWI76_RS07020	0.56	-0.6
1,476,457	-		BWI76_RS07020	0.57	+2.1
1,476,516	+		BWI76_RS07020	0.61	-0.2
1,476,518	+		BWI76_RS07020	0.62	-1.4
1,476,555	+		BWI76_RS07020	0.64	-2.1
1,476,555	+		BWI76_RS07020	0.64	-1.9
1,476,563	-		BWI76_RS07020	0.65	+0.8
1,476,563	-		BWI76_RS07020	0.65	-0.9
1,476,563	-		BWI76_RS07020	0.65	-0.4
1,476,572	-		BWI76_RS07020	0.66	+1.0
1,476,587	-		BWI76_RS07020	0.67	-2.9
1,476,605	+		BWI76_RS07020	0.68	-1.9
1,476,609	+		BWI76_RS07020	0.68	-0.1
1,476,647	-		BWI76_RS07020	0.71	+0.3
1,476,673	-		BWI76_RS07020	0.73	-0.2
1,476,702	+		BWI76_RS07020	0.76	+0.6
1,476,712	+		BWI76_RS07020	0.76	+0.6
1,476,712	+		BWI76_RS07020	0.76	-2.3
1,476,720	-		BWI76_RS07020	0.77	+0.8
1,476,720	-		BWI76_RS07020	0.77	-0.7
1,476,730	+		BWI76_RS07020	0.78	-1.1
1,476,773	-		BWI76_RS07020	0.81	-0.7
1,476,773	-		BWI76_RS07020	0.81	-2.9
1,476,775	-		BWI76_RS07020	0.81	-0.6
1,476,775	-		BWI76_RS07020	0.81	-0.6
1,476,783	-		BWI76_RS07020	0.82	-2.2
1,476,910	-				+1.2
1,476,915	+				+0.1
1,476,915	+				+0.5
1,476,923	-				-0.2
1,476,938	+				-3.4
1,476,938	+				-0.7
1,476,938	+				-0.2
1,476,938	+				+1.3
1,476,938	+				-3.6
1,476,938	+				+0.2
1,476,938	+				-1.2
1,476,938	+				+0.7
1,476,946	-				-1.1
1,476,946	-				-0.8
1,476,946	-				+0.7
1,476,946	-				-3.9
1,476,970	+				+0.1
1,476,978	-				-3.1
1,477,008	+				-0.3
1,477,008	+				+1.4
1,477,014	+				+1.5
1,477,014	+				-0.0
1,477,032	+				+1.1
1,477,063	-				-1.4
1,477,063	-				-3.3
1,477,065	+				+0.3
1,477,065	+				-1.6
1,477,065	+				-0.3
1,477,065	+				-0.8
1,477,065	+				-2.6
1,477,065	+				-1.5
1,477,065	+				-1.2
1,477,065	+				+1.5
1,477,073	-				+0.7
1,477,073	-				+1.0
1,477,073	-				+1.4
1,477,073	-				-3.5
1,477,073	-				+3.0
1,477,078	+				-0.1
1,477,078	+				+1.9
1,477,091	-				-0.7
1,477,103	-				-0.5
1,477,138	+				-1.6
1,477,142	+				-0.0
1,477,146	-				+0.2
1,477,146	-				-1.9
1,477,146	-				+0.5
1,477,182	+		BWI76_RS07025	0.12	-1.2
1,477,189	+		BWI76_RS07025	0.13	+0.4
1,477,231	+		BWI76_RS07025	0.17	-0.8
1,477,348	+		BWI76_RS07025	0.27	-1.1
1,477,350	+		BWI76_RS07025	0.27	-0.9
1,477,356	-		BWI76_RS07025	0.28	+0.0
1,477,497	+		BWI76_RS07025	0.40	+1.6
1,477,549	-		BWI76_RS07025	0.44	-1.3
1,477,723	-		BWI76_RS07025	0.60	-0.5
1,478,025	+		BWI76_RS07025	0.86	+0.2
1,478,049	+		BWI76_RS07025	0.88	-1.6
1,478,057	-		BWI76_RS07025	0.89	-1.8
1,478,087	-				-1.0
1,478,099	+				-2.6
1,478,099	+				-1.8
1,478,104	+				-0.2
1,478,107	-				+0.7
1,478,107	-				+0.5
1,478,123	+				+4.1
1,478,123	+				+0.6
1,478,123	+				-0.7
1,478,123	+				-0.9
1,478,123	+				-0.3
1,478,123	+				+0.3
1,478,123	+				-0.3
1,478,123	+				-0.5
1,478,123	+				-0.6
1,478,123	+				+0.3
1,478,131	-				-1.4
1,478,131	-				-0.8
1,478,131	-				-0.5
1,478,131	-				-1.8
1,478,131	-				+2.0
1,478,201	+				+0.3
1,478,201	+				+0.3
1,478,209	-				-1.6
1,478,226	-				-1.1
1,478,259	+				-1.6
1,478,262	-				+0.2
1,478,267	-				+0.8
1,478,267	-				-0.4
1,478,290	-				+1.6
1,478,296	+				+0.3
1,478,319	-				-2.3
1,478,328	+				-0.8
1,478,336	-				+0.2
1,478,338	+				-2.1
1,478,338	+				-1.0
1,478,338	+				-0.5
1,478,346	-		BWI76_RS07030	0.11	+0.9
1,478,346	-		BWI76_RS07030	0.11	+0.2
1,478,346	-		BWI76_RS07030	0.11	-2.2
1,478,346	-		BWI76_RS07030	0.11	-0.8
1,478,352	+		BWI76_RS07030	0.12	-0.6
1,478,385	+		BWI76_RS07030	0.16	+0.2
1,478,385	+		BWI76_RS07030	0.16	-3.0
1,478,385	+				-0.0
1,478,393	-		BWI76_RS07030	0.17	-1.4
1,478,424	-		BWI76_RS07030	0.21	+1.1
1,478,434	-				+1.4
1,478,442	+				-0.7
1,478,448	-		BWI76_RS07030	0.24	-1.5
1,478,461	-		BWI76_RS07030	0.26	-0.1
1,478,482	+		BWI76_RS07030	0.28	+0.2
1,478,517	-		BWI76_RS07030	0.33	-3.2
1,478,545	+		BWI76_RS07030	0.36	-1.8
1,478,545	+		BWI76_RS07030	0.36	-0.8
1,478,545	+		BWI76_RS07030	0.36	+1.3
1,478,545	+		BWI76_RS07030	0.36	-1.3
1,478,545	+		BWI76_RS07030	0.36	-2.4
1,478,545	+		BWI76_RS07030	0.36	-0.2
1,478,545	+		BWI76_RS07030	0.36	+0.8
1,478,545	+		BWI76_RS07030	0.36	-1.3
1,478,545	+		BWI76_RS07030	0.36	+0.4
1,478,545	+		BWI76_RS07030	0.36	-1.9
1,478,553	-		BWI76_RS07030	0.37	-0.8
1,478,553	-		BWI76_RS07030	0.37	-0.6
1,478,553	-		BWI76_RS07030	0.37	-0.9
1,478,553	-		BWI76_RS07030	0.37	-0.2
1,478,553	-		BWI76_RS07030	0.37	-0.3
1,478,553	-		BWI76_RS07030	0.37	+0.5
1,478,553	-		BWI76_RS07030	0.37	+0.5
1,478,553	-		BWI76_RS07030	0.37	-0.2
1,478,553	-		BWI76_RS07030	0.37	-0.0
1,478,553	-		BWI76_RS07030	0.37	-0.5
1,478,553	-		BWI76_RS07030	0.37	-0.1
1,478,554	-		BWI76_RS07030	0.37	+0.3
1,478,587	+		BWI76_RS07030	0.42	-1.9
1,478,608	+		BWI76_RS07030	0.44	+0.1
1,478,608	+		BWI76_RS07030	0.44	-1.2
1,478,616	-		BWI76_RS07030	0.45	-1.3
1,478,621	+		BWI76_RS07030	0.46	-0.9
1,478,621	+		BWI76_RS07030	0.46	-2.6
1,478,642	-		BWI76_RS07030	0.49	+0.8
1,478,663	+				+0.4
1,478,663	+		BWI76_RS07030	0.51	-0.7
1,478,671	-		BWI76_RS07030	0.52	-0.7
1,478,671	-		BWI76_RS07030	0.52	-0.4
1,478,689	+		BWI76_RS07030	0.55	-0.8
1,478,727	+		BWI76_RS07030	0.60	-1.7
1,478,735	-		BWI76_RS07030	0.61	-0.5
1,478,745	+		BWI76_RS07030	0.62	-1.6
1,478,752	-		BWI76_RS07030	0.63	-0.8
1,478,752	-		BWI76_RS07030	0.63	+0.3
1,478,768	+		BWI76_RS07030	0.65	-1.9
1,478,789	-		BWI76_RS07030	0.67	-0.3
1,478,796	-		BWI76_RS07030	0.68	-2.7
1,478,798	+		BWI76_RS07030	0.69	+0.6
1,478,803	-		BWI76_RS07030	0.69	-0.6
1,478,822	+		BWI76_RS07030	0.72	-1.1
1,478,901	-		BWI76_RS07030	0.82	-1.9
1,478,991	-				-2.3
1,478,991	-				-3.0
1,478,991	-				-1.9
1,479,061	+				+1.0
1,479,061	+				+0.9
1,479,061	+				-2.3
1,479,061	+				+2.7
1,479,061	+				+0.4
1,479,061	+				+0.7
1,479,069	-				-0.4
1,479,069	-				+1.1
1,479,069	-				+1.1
1,479,069	-				+0.8
1,479,069	-				-2.0
1,479,069	-				+0.8
1,479,069	-				+3.3
1,479,069	-				+1.6
1,479,083	-				+0.8
1,479,088	-				-0.0
1,479,111	-				+0.1
1,479,111	-				+0.3
1,479,123	-				-0.3
1,479,140	+				+1.5
1,479,140	+				-0.0
1,479,140	+				-0.1
1,479,148	-				+1.1
1,479,148	-				-0.4
1,479,148	-				-0.6
1,479,153	+				-0.1
1,479,155	+				+0.4
1,479,155	+				-1.8