Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06810 and BWI76_RS06815 are separated by 150 nucleotides BWI76_RS06815 and BWI76_RS06820 are separated by 91 nucleotides BWI76_RS06820 and BWI76_RS06825 are separated by 57 nucleotides BWI76_RS06825 and BWI76_RS06830 overlap by 1 nucleotides
BWI76_RS06810: BWI76_RS06810 - hypothetical protein, at 1,428,919 to 1,429,296
_RS06810
BWI76_RS06815: BWI76_RS06815 - adenine phosphoribosyltransferase, at 1,429,447 to 1,429,998
_RS06815
BWI76_RS06820: BWI76_RS06820 - DNA polymerase III subunit gamma/tau, at 1,430,090 to 1,431,991
_RS06820
BWI76_RS06825: BWI76_RS06825 - nucleoid-associated protein, YbaB/EbfC family, at 1,432,049 to 1,432,381
_RS06825
BWI76_RS06830: BWI76_RS06830 - recombination protein RecR, at 1,432,381 to 1,432,986
_RS06830
Position (kb) 1430
1431
1432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1429.141 kb on - strand, within BWI76_RS06810 at 1429.250 kb on - strand, within BWI76_RS06810 at 1429.290 kb on + strand at 1429.367 kb on - strand at 1429.498 kb on + strand at 1429.498 kb on + strand at 1429.506 kb on - strand, within BWI76_RS06815 at 1429.585 kb on - strand, within BWI76_RS06815 at 1429.696 kb on - strand, within BWI76_RS06815 at 1429.891 kb on + strand, within BWI76_RS06815 at 1432.436 kb on + strand at 1432.636 kb on + strand, within BWI76_RS06830 at 1432.694 kb on + strand, within BWI76_RS06830 at 1432.869 kb on + strand, within BWI76_RS06830 at 1432.874 kb on + strand, within BWI76_RS06830
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 3; outgrowth in LB remove 1,429,141 - BWI76_RS06810 0.59 -0.3 1,429,250 - BWI76_RS06810 0.88 +1.4 1,429,290 + -2.9 1,429,367 - -1.7 1,429,498 + +0.0 1,429,498 + -0.1 1,429,506 - BWI76_RS06815 0.11 +0.4 1,429,585 - BWI76_RS06815 0.25 +0.4 1,429,696 - BWI76_RS06815 0.45 -0.9 1,429,891 + BWI76_RS06815 0.80 +0.4 1,432,436 + -1.0 1,432,636 + BWI76_RS06830 0.42 -0.1 1,432,694 + BWI76_RS06830 0.52 -0.7 1,432,869 + BWI76_RS06830 0.81 -2.5 1,432,874 + BWI76_RS06830 0.81 +0.6
Or see this region's nucleotide sequence