Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06725

Experiment: rhizosphere EcoFAB sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere EcoFAB sample 3; outgrowth in LB
1,410,083	+		BWI76_RS06715	0.76	-0.8
1,410,281	+		BWI76_RS06715	0.86	+0.8
1,410,434	-				-0.1
1,410,464	-				+0.3
1,410,472	-				-0.5
1,410,480	-				+0.6
1,410,495	+				+0.9
1,410,495	-				-0.7
1,410,508	-				-0.0
1,410,510	+				+0.3
1,410,510	+				-2.4
1,410,510	+				+0.8
1,410,510	+				-0.8
1,410,510	+				-0.4
1,410,510	+				+0.7
1,410,510	+				+0.1
1,410,518	-				-0.9
1,410,518	-				-1.4
1,410,518	-				+0.7
1,410,518	-				-1.0
1,410,518	-				-0.1
1,410,518	-				-0.4
1,410,518	-				-0.8
1,410,518	-				-3.8
1,410,518	-				-0.8
1,410,522	+				+0.4
1,410,537	+				-1.5
1,410,554	+				+0.9
1,410,554	+				+0.5
1,410,576	+				-0.7
1,410,582	+				-0.9
1,410,588	+				+0.5
1,410,590	-				+0.2
1,410,590	-				-2.1
1,410,595	+				+0.1
1,410,633	+				-0.3
1,410,633	+				+3.4
1,410,633	+				-0.6
1,410,635	+				+0.2
1,410,641	-				-0.9
1,410,643	-				+0.5
1,410,643	-				-0.3
1,410,645	+				-0.2
1,410,666	+				-1.2
1,410,669	+				+0.9
1,410,669	-				-2.9
1,410,676	+		BWI76_RS06720	0.12	-0.8
1,410,680	+		BWI76_RS06720	0.13	+0.9
1,410,684	-		BWI76_RS06720	0.15	+0.5
1,410,692	+		BWI76_RS06720	0.17	-0.8
1,410,692	+		BWI76_RS06720	0.17	-0.6
1,410,692	+		BWI76_RS06720	0.17	+0.3
1,410,692	+		BWI76_RS06720	0.17	-1.0
1,410,692	+		BWI76_RS06720	0.17	+0.1
1,410,692	+		BWI76_RS06720	0.17	+0.7
1,410,692	+		BWI76_RS06720	0.17	+0.4
1,410,692	+		BWI76_RS06720	0.17	+0.5
1,410,692	+		BWI76_RS06720	0.17	-0.7
1,410,692	+		BWI76_RS06720	0.17	+1.7
1,410,693	+		BWI76_RS06720	0.17	-0.4
1,410,693	+		BWI76_RS06720	0.17	+0.1
1,410,693	+		BWI76_RS06720	0.17	-1.4
1,410,693	+		BWI76_RS06720	0.17	+0.6
1,410,693	+		BWI76_RS06720	0.17	-0.1
1,410,693	+		BWI76_RS06720	0.17	-0.9
1,410,693	+				-0.1
1,410,693	+		BWI76_RS06720	0.17	+0.4
1,410,693	+		BWI76_RS06720	0.17	-0.2
1,410,693	+		BWI76_RS06720	0.17	+1.1
1,410,693	+		BWI76_RS06720	0.17	+0.1
1,410,693	+		BWI76_RS06720	0.17	-0.2
1,410,693	+		BWI76_RS06720	0.17	+0.5
1,410,693	+		BWI76_RS06720	0.17	+0.4
1,410,693	+		BWI76_RS06720	0.17	-0.4
1,410,694	+		BWI76_RS06720	0.18	+1.3
1,410,694	+		BWI76_RS06720	0.18	-0.6
1,410,694	+		BWI76_RS06720	0.18	+0.6
1,410,694	+		BWI76_RS06720	0.18	+1.4
1,410,694	+		BWI76_RS06720	0.18	+0.4
1,410,694	+		BWI76_RS06720	0.18	-0.5
1,410,694	+		BWI76_RS06720	0.18	+0.5
1,410,700	-		BWI76_RS06720	0.20	+0.7
1,410,700	-		BWI76_RS06720	0.20	-0.5
1,410,700	-		BWI76_RS06720	0.20	+0.5
1,410,700	-		BWI76_RS06720	0.20	-0.8
1,410,700	-		BWI76_RS06720	0.20	-1.0
1,410,700	-		BWI76_RS06720	0.20	-1.7
1,410,700	-		BWI76_RS06720	0.20	-0.2
1,410,701	-		BWI76_RS06720	0.20	-1.2
1,410,701	-		BWI76_RS06720	0.20	-0.5
1,410,701	-		BWI76_RS06720	0.20	+0.1
1,410,701	-		BWI76_RS06720	0.20	-0.7
1,410,701	-		BWI76_RS06720	0.20	-0.1
1,410,701	-		BWI76_RS06720	0.20	-0.3
1,410,701	-		BWI76_RS06720	0.20	+1.2
1,410,701	-		BWI76_RS06720	0.20	-0.3
1,410,701	-		BWI76_RS06720	0.20	+0.1
1,410,701	-		BWI76_RS06720	0.20	+1.3
1,410,701	-		BWI76_RS06720	0.20	-1.8
1,410,701	-		BWI76_RS06720	0.20	-0.6
1,410,701	-		BWI76_RS06720	0.20	+0.4
1,410,701	-		BWI76_RS06720	0.20	-0.7
1,410,701	-		BWI76_RS06720	0.20	-2.4
1,410,701	-		BWI76_RS06720	0.20	-0.9
1,410,701	-		BWI76_RS06720	0.20	-1.5
1,410,701	-		BWI76_RS06720	0.20	+0.2
1,410,701	-		BWI76_RS06720	0.20	+1.1
1,410,701	-		BWI76_RS06720	0.20	-0.2
1,410,702	+		BWI76_RS06720	0.20	-1.2
1,410,702	+		BWI76_RS06720	0.20	+0.3
1,410,702	+		BWI76_RS06720	0.20	-0.2
1,410,702	-		BWI76_RS06720	0.20	+1.9
1,410,702	-		BWI76_RS06720	0.20	-1.0
1,410,702	-		BWI76_RS06720	0.20	+1.8
1,410,702	-		BWI76_RS06720	0.20	+0.1
1,410,702	-		BWI76_RS06720	0.20	-1.2
1,410,702	-		BWI76_RS06720	0.20	-0.8
1,410,702	-		BWI76_RS06720	0.20	-0.6
1,410,702	-		BWI76_RS06720	0.20	+2.0
1,410,702	-		BWI76_RS06720	0.20	-2.1
1,410,702	-		BWI76_RS06720	0.20	-0.2
1,410,702	-		BWI76_RS06720	0.20	-0.5
1,410,702	-		BWI76_RS06720	0.20	+0.2
1,410,702	-		BWI76_RS06720	0.20	-2.4
1,410,710	-		BWI76_RS06720	0.23	+0.3
1,410,710	-		BWI76_RS06720	0.23	-0.1
1,410,718	+		BWI76_RS06720	0.25	-0.2
1,410,736	+		BWI76_RS06720	0.31	-0.7
1,410,772	+		BWI76_RS06720	0.43	-1.1
1,410,772	+		BWI76_RS06720	0.43	-1.1
1,410,775	-		BWI76_RS06720	0.43	-0.6
1,410,775	-		BWI76_RS06720	0.43	-0.7
1,410,777	+		BWI76_RS06720	0.44	-1.6
1,410,777	+		BWI76_RS06720	0.44	+0.7
1,410,785	-		BWI76_RS06720	0.47	-0.9
1,410,785	-		BWI76_RS06720	0.47	-2.7
1,410,785	-		BWI76_RS06720	0.47	-2.7
1,410,797	+		BWI76_RS06720	0.50	-0.0
1,410,797	+				-1.0
1,410,805	-		BWI76_RS06720	0.53	+0.2
1,410,807	+		BWI76_RS06720	0.54	-0.3
1,410,815	+		BWI76_RS06720	0.56	+0.1
1,410,825	+		BWI76_RS06720	0.59	-1.0
1,410,831	+		BWI76_RS06720	0.61	+0.4
1,410,831	+		BWI76_RS06720	0.61	-2.4
1,410,831	+		BWI76_RS06720	0.61	-1.5
1,410,831	+		BWI76_RS06720	0.61	-0.6
1,410,831	+		BWI76_RS06720	0.61	-0.9
1,410,831	+		BWI76_RS06720	0.61	-0.1
1,410,831	+		BWI76_RS06720	0.61	+1.4
1,410,833	+		BWI76_RS06720	0.62	-0.5
1,410,833	+		BWI76_RS06720	0.62	+0.6
1,410,833	+		BWI76_RS06720	0.62	-0.6
1,410,838	+		BWI76_RS06720	0.63	-0.0
1,410,838	-		BWI76_RS06720	0.63	-0.3
1,410,839	-		BWI76_RS06720	0.64	+0.6
1,410,839	-		BWI76_RS06720	0.64	-2.7
1,410,839	-		BWI76_RS06720	0.64	-1.6
1,410,839	-		BWI76_RS06720	0.64	-1.3
1,410,839	-		BWI76_RS06720	0.64	-0.4
1,410,839	-		BWI76_RS06720	0.64	-1.4
1,410,839	-		BWI76_RS06720	0.64	-0.8
1,410,844	+		BWI76_RS06720	0.65	-0.9
1,410,847	-		BWI76_RS06720	0.66	+0.4
1,410,857	-		BWI76_RS06720	0.70	-0.4
1,410,872	-		BWI76_RS06720	0.74	-3.8
1,410,885	-		BWI76_RS06720	0.78	-1.4
1,410,901	+		BWI76_RS06720	0.83	+0.0
1,410,901	+		BWI76_RS06720	0.83	-0.3
1,410,901	+		BWI76_RS06720	0.83	+0.6
1,410,909	-		BWI76_RS06720	0.86	-1.6
1,410,909	-		BWI76_RS06720	0.86	+0.7
1,410,932	+				+0.4
1,410,957	+				+0.9
1,410,972	+				-1.4
1,411,034	+				-0.4
1,411,041	+				-3.4
1,411,041	+				-2.1
1,411,041	+				-2.3
1,411,042	+				-2.1
1,411,042	-				+0.3
1,411,049	-				+0.4
1,411,049	-				-0.4
1,411,049	-				+1.1
1,411,049	-				+0.5
1,411,049	-				-0.1
1,411,049	-				+0.4
1,411,054	+				-0.4
1,411,072	+				-1.5
1,411,075	+				-1.1
1,411,075	-				+0.3
1,411,086	+				-0.9
1,411,086	+				-2.8
1,411,087	-				-0.0
1,411,087	-				+0.3
1,411,089	-				+0.2
1,411,091	+				-1.0
1,411,094	-				+1.4
1,411,094	-				+0.6
1,411,094	-				-0.9
1,411,094	-				-2.3
1,411,099	-				-0.6
1,411,099	-				+1.2
1,411,115	+				-2.1
1,411,184	-				+0.7
1,411,186	+				-1.2
1,411,189	-				+1.4
1,411,194	-				-0.1
1,411,194	-				+0.5
1,411,194	-				-1.6
1,411,212	-		BWI76_RS06725	0.11	+0.1
1,411,212	-		BWI76_RS06725	0.11	+0.4
1,411,216	+		BWI76_RS06725	0.11	-2.6
1,411,217	+		BWI76_RS06725	0.11	+0.7
1,411,218	+		BWI76_RS06725	0.11	-0.9
1,411,218	+		BWI76_RS06725	0.11	-2.7
1,411,218	+		BWI76_RS06725	0.11	-1.3
1,411,218	+		BWI76_RS06725	0.11	-1.5
1,411,222	+		BWI76_RS06725	0.11	-1.6
1,411,225	-		BWI76_RS06725	0.12	-2.6
1,411,226	-		BWI76_RS06725	0.12	-3.0
1,411,226	-		BWI76_RS06725	0.12	+0.9
1,411,226	-		BWI76_RS06725	0.12	-3.7
1,411,226	-		BWI76_RS06725	0.12	-0.1
1,411,228	+				+3.7
1,411,236	-		BWI76_RS06725	0.13	+0.0
1,411,244	-		BWI76_RS06725	0.13	+0.3
1,411,244	-		BWI76_RS06725	0.13	+0.2
1,411,263	-		BWI76_RS06725	0.15	-1.0
1,411,274	-		BWI76_RS06725	0.16	+0.2
1,411,318	+		BWI76_RS06725	0.19	+1.7
1,411,318	+		BWI76_RS06725	0.19	-2.4
1,411,326	-		BWI76_RS06725	0.20	-0.3
1,411,351	-		BWI76_RS06725	0.22	-1.1
1,411,352	+		BWI76_RS06725	0.22	-2.7
1,411,399	+		BWI76_RS06725	0.25	-3.1
1,411,409	+		BWI76_RS06725	0.26	+0.3
1,411,415	+		BWI76_RS06725	0.27	-1.0
1,411,417	-		BWI76_RS06725	0.27	-1.2
1,411,417	-		BWI76_RS06725	0.27	-1.8
1,411,417	-		BWI76_RS06725	0.27	+1.1
1,411,474	+		BWI76_RS06725	0.31	-0.1
1,411,497	+		BWI76_RS06725	0.33	-1.0
1,411,510	+		BWI76_RS06725	0.34	-2.8
1,411,529	-		BWI76_RS06725	0.36	-0.8
1,411,656	+		BWI76_RS06725	0.46	-0.8
1,411,732	+		BWI76_RS06725	0.52	-1.1
1,411,733	+		BWI76_RS06725	0.52	-0.2
1,411,733	-		BWI76_RS06725	0.52	-2.3
1,411,748	+		BWI76_RS06725	0.53	-3.2
1,411,761	-		BWI76_RS06725	0.54	-0.5
1,411,806	-		BWI76_RS06725	0.57	-0.8
1,411,999	+		BWI76_RS06725	0.73	+0.2
1,412,142	-		BWI76_RS06725	0.84	+0.2
1,412,221	+				-2.7
1,412,229	-				-2.3
1,412,267	-				+0.3
1,412,300	-				+0.2
1,412,300	-				+0.0
1,412,697	-				-1.9
1,413,248	+		BWI76_RS06730	0.59	-3.9